Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C11orf40 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 143501 chromosome 11 open reading frame 40 chr11 - 4598550 - 4604050 4599050 Transcription Factor Binding Sites   Download all TFBS in the C11orf40 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFIA_NFI_full_dimeric_15_1 SELEX + 4599665 4599679 7.0E-06 CTGGCAGGAGGCCAA 15 NFIA_NFI_full_dimeric_15_1 SELEX - 4599665 4599679 1.0E-06 TTGGCCTCCTGCCAG 15 RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 4599694 4599710 7.0E-06 CAGGTCAAGACACATCA 17 NFIX_NFI_full_dimeric_15_2 SELEX + 4599665 4599679 3.0E-06 CTGGCAGGAGGCCAA 15 NFIX_NFI_full_dimeric_15_2 SELEX - 4599665 4599679 9.0E-06 TTGGCCTCCTGCCAG 15 NFIB_NFI_full_dimeric_15_1 SELEX - 4599665 4599679 1.0E-06 TTGGCCTCCTGCCAG 15 V_NF1A_Q6_M02103 TRANSFAC - 4599664 4599679 5.0E-06 TTGGCCTCCTGCCAGG 16 V_ISL2_01_M01328 TRANSFAC - 4599682 4599697 1.0E-06 ATCAATTACTTAAGGT 16 V_DLX2_01_M01468 TRANSFAC - 4599684 4599699 4.0E-06 ACATCAATTACTTAAG 16 V_HOXC6_01_M01406 TRANSFAC - 4599684 4599700 2.0E-06 CACATCAATTACTTAAG 17 V_HOXA6_01_M01392 TRANSFAC - 4599684 4599699 3.0E-06 ACATCAATTACTTAAG 16 V_LEF1_03_M02878 TRANSFAC - 4599686 4599701 2.0E-06 ACACATCAATTACTTA 16 V_NKX23_01_M01457 TRANSFAC + 4599683 4599698 2.0E-06 CCTTAAGTAATTGATG 16 V_HOXB4_01_M01424 TRANSFAC - 4599684 4599700 9.0E-06 CACATCAATTACTTAAG 17 V_TCF7L2_04_M02922 TRANSFAC - 4599686 4599701 7.0E-06 ACACATCAATTACTTA 16 V_BARX2_01_M01431 TRANSFAC - 4599684 4599699 6.0E-06 ACATCAATTACTTAAG 16 V_BARX2_01_M01431 TRANSFAC + 4599686 4599701 2.0E-06 TAAGTAATTGATGTGT 16 V_HOXC5_01_M01454 TRANSFAC - 4599684 4599700 3.0E-06 CACATCAATTACTTAAG 17 V_VAX1_01_M01397 TRANSFAC - 4599684 4599699 3.0E-06 ACATCAATTACTTAAG 16 V_MOX1_01_M01443 TRANSFAC - 4599684 4599699 9.0E-06 ACATCAATTACTTAAG 16 V_BSX_01_M01442 TRANSFAC - 4599684 4599699 2.0E-06 ACATCAATTACTTAAG 16 V_CTF1_01_M01196 TRANSFAC + 4599666 4599679 0.0E+00 TGGCAGGAGGCCAA 14 V_HOXD3_01_M01338 TRANSFAC + 4599684 4599699 7.0E-06 CTTAAGTAATTGATGT 16 TLX1_NFIC_MA0119.1 JASPAR + 4599666 4599679 0.0E+00 TGGCAGGAGGCCAA 14 V_HOX13_02_M01452 TRANSFAC - 4599684 4599699 6.0E-06 ACATCAATTACTTAAG 16 V_NF1_Q6_M00193 TRANSFAC + 4599663 4599680 6.0E-06 TCCTGGCAGGAGGCCAAA 18 V_T3RALPHA_Q6_M01724 TRANSFAC - 4599703 4599713 3.0E-06 GTTCAGGTCAA 11 V_HOXC8_01_M01321 TRANSFAC + 4599684 4599699 3.0E-06 CTTAAGTAATTGATGT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.