Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LDLRAD3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 143458 low density lipoprotein receptor class A domain containing 3 chr11 + 35960611 - 35966111 35965611 Transcription Factor Binding Sites   Download all TFBS in the LDLRAD3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints GCM1_GCM_DBD_monomeric_10_1 SELEX + 35965461 35965470 1.0E-05 CATGCGGGTG 10 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 35968368 35968380 7.0E-06 AAAAACAATAAAA 13 Egr1_MA0162.1 JASPAR + 35965890 35965900 7.0E-06 TGTGTGGGCGT 11 PROX1_PROX_DBD_dimeric_12_1 SELEX + 35966317 35966328 5.0E-06 TAAGACGTCTGA 12 PROX1_PROX_DBD_dimeric_12_1 SELEX - 35966317 35966328 9.0E-06 TCAGACGTCTTA 12 EWSR1-FLI1_MA0149.1 JASPAR + 35965319 35965336 9.0E-06 GGACAAAAGGAAGCAGAG 18 Pax4_MA0068.1 JASPAR - 35968351 35968380 9.0E-06 AAAAACAATAAAACCCACCCCTCACACCGT 30 Pax4_MA0068.1 JASPAR - 35968356 35968385 3.0E-06 AAGTTAAAAACAATAAAACCCACCCCTCAC 30 POU4F3_POU_DBD_monomeric_16_1 SELEX - 35965034 35965049 9.0E-06 CTGCATTTTTAACAAC 16 LEF1_HMG_DBD_monomeric_15_1 SELEX - 35968480 35968494 9.0E-06 GAAGATGAAAAGCAA 15 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 35966570 35966581 7.0E-06 TGACAGCTGTGG 12 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 35968368 35968377 3.0E-06 AACAATAAAA 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 35968368 35968376 7.0E-06 ACAATAAAA 9 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 35968367 35968380 8.0E-06 AAAAACAATAAAAC 14 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 35968367 35968377 4.0E-06 AACAATAAAAC 11 EGR2_C2H2_full_monomeric_15_1 SELEX - 35965888 35965902 8.0E-06 GCACGCCCACACAAT 15 Egr3_C2H2_DBD_monomeric_15_1 SELEX - 35965887 35965901 4.0E-06 CACGCCCACACAATA 15 ZBTB49_C2H2_DBD_monomeric_17_1 SELEX - 35967946 35967962 8.0E-06 CTGCTCTTGGAATGTCA 17 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 35968367 35968376 4.0E-06 ACAATAAAAC 10 EGR4_C2H2_DBD_monomeric_16_2 SELEX - 35965887 35965902 4.0E-06 GCACGCCCACACAATA 16 FEV_MA0156.1 JASPAR + 35969218 35969225 1.0E-05 CAGGAAAT 8 GCM1_GCM_full_monomeric_11_1 SELEX + 35965461 35965471 1.0E-05 CATGCGGGTGG 11 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 35966570 35966581 8.0E-06 TGACAGCTGTGG 12 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 35968367 35968376 9.0E-06 ACAATAAAAC 10 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 35966170 35966180 9.0E-06 TTTCCCCACCT 11 CPEB1_RRM_full_monomeric_8_1 SELEX - 35967974 35967981 4.0E-06 AATAAAAA 8 Mafb_bZIP_DBD_dimeric_18_1 SELEX + 35966503 35966520 6.0E-06 TCTGCTGATGTGGGCATG 18 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 35968368 35968376 6.0E-06 ACAATAAAA 9 NFIA_NFI_full_monomeric_10_1 SELEX + 35966739 35966748 9.0E-06 TTTGCCAAGT 10 CDX1_homeodomain_DBD_monomeric_9_1 SELEX - 35968368 35968376 6.0E-06 ACAATAAAA 9 RREB1_MA0073.1 JASPAR - 35966001 35966020 0.0E+00 ACACAACACACACACAGCCA 20 RREB1_MA0073.1 JASPAR - 35966003 35966022 1.0E-06 ACACACAACACACACACAGC 20 RREB1_MA0073.1 JASPAR - 35966005 35966024 1.0E-05 ACACACACAACACACACACA 20 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 35968367 35968377 9.0E-06 AACAATAAAAC 11 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 35968369 35968382 6.0E-06 TTAAAAACAATAAA 14 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 35968367 35968376 9.0E-06 ACAATAAAAC 10 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 35968367 35968380 1.0E-05 AAAAACAATAAAAC 14 V_MEQ_01_M02049 TRANSFAC - 35966008 35966016 7.0E-06 AACACACAC 9 V_MEQ_01_M02049 TRANSFAC - 35966017 35966025 7.0E-06 AACACACAC 9 V_MAFK_03_M02776 TRANSFAC - 35965083 35965097 2.0E-06 TTAAAATACTGACTC 15 V_NF1_Q6_01_M00806 TRANSFAC + 35969190 35969206 5.0E-06 ATTGAAACTTGCCAAGG 17 V_CEBP_Q3_M00770 TRANSFAC - 35965490 35965501 7.0E-06 AAGTTTTGCAAG 12 V_ZFX_01_M01593 TRANSFAC + 35965595 35965610 3.0E-06 GCCGAGGCCGCGGGGG 16 V_SOX30_03_M02804 TRANSFAC - 35968366 35968381 4.0E-06 TAAAAACAATAAAACC 16 V_ETS_B_M00340 TRANSFAC + 35969216 35969229 1.0E-06 GGCAGGAAATCATT 14 V_MMEF2_Q6_M00405 TRANSFAC - 35967969 35967984 2.0E-06 CTGAATAAAAAAGGCC 16 V_SOX5_01_M00042 TRANSFAC - 35968370 35968379 9.0E-06 AAAACAATAA 10 V_FOXJ1_04_M02854 TRANSFAC - 35965910 35965924 1.0E-05 ACAGCACAACACGAC 15 V_SP1_Q6_01_M00931 TRANSFAC + 35965581 35965590 7.0E-06 GGGGCGGGGT 10 V_SRY_02_M00160 TRANSFAC - 35968369 35968380 0.0E+00 AAAAACAATAAA 12 V_FOXO3A_Q1_M01137 TRANSFAC - 35968370 35968381 5.0E-06 TAAAAACAATAA 12 V_EGR1_02_M01972 TRANSFAC + 35965890 35965900 4.0E-06 TGTGTGGGCGT 11 V_SP1_02_M01303 TRANSFAC + 35965581 35965591 8.0E-06 GGGGCGGGGTC 11 V_AP4_Q6_02_M01860 TRANSFAC - 35966567 35966579 2.0E-06 ACAGCTGTGGGCG 13 V_HOXD13_01_M01404 TRANSFAC - 35968364 35968379 3.0E-06 AAAACAATAAAACCCA 16 V_MEF2A_Q6_M02024 TRANSFAC + 35965090 35965099 7.0E-06 TATTTTAACA 10 V_ELF4_04_M02850 TRANSFAC - 35968367 35968383 3.0E-06 GTTAAAAACAATAAAAC 17 V_SOX13_03_M02797 TRANSFAC - 35968367 35968382 0.0E+00 TTAAAAACAATAAAAC 16 V_SOX7_03_M02807 TRANSFAC - 35968363 35968384 0.0E+00 AGTTAAAAACAATAAAACCCAC 22 V_TCF3_04_M02816 TRANSFAC + 35968487 35968503 9.0E-06 TCATCTTCAAAGAGATG 17 V_EGR1_01_M00243 TRANSFAC + 35965889 35965900 6.0E-06 TTGTGTGGGCGT 12 V_ZFP105_03_M02827 TRANSFAC - 35968367 35968381 7.0E-06 TAAAAACAATAAAAC 15 V_ZFP105_03_M02827 TRANSFAC - 35968370 35968384 2.0E-06 AGTTAAAAACAATAA 15 V_HOXB13_01_M01467 TRANSFAC - 35968364 35968379 4.0E-06 AAAACAATAAAACCCA 16 V_SIX1_01_M01313 TRANSFAC + 35969201 35969217 8.0E-06 CCAAGGATATCATGTGG 17 V_POLY_C_M00212 TRANSFAC + 35965226 35965243 4.0E-06 TAGTAAACTCACTTTGTA 18 V_POLY_C_M00212 TRANSFAC - 35968358 35968375 5.0E-06 CAATAAAACCCACCCCTC 18 V_ZBP89_Q4_M01816 TRANSFAC - 35968578 35968587 4.0E-06 CCCTCCCCCA 10 V_AMEF2_Q6_M00403 TRANSFAC - 35967967 35967984 2.0E-06 CTGAATAAAAAAGGCCTC 18 V_HOXB9_01_M01426 TRANSFAC - 35968364 35968379 1.0E-06 AAAACAATAAAACCCA 16 V_SP1_Q6_M00196 TRANSFAC + 35965579 35965591 3.0E-06 GAGGGGCGGGGTC 13 V_FOXK1_04_M02856 TRANSFAC - 35968365 35968379 4.0E-06 AAAACAATAAAACCC 15 V_CDX2_01_M01449 TRANSFAC - 35968365 35968380 9.0E-06 AAAAACAATAAAACCC 16 V_SOX18_03_M02801 TRANSFAC + 35968368 35968383 0.0E+00 TTTTATTGTTTTTAAC 16 V_SZF11_01_M01109 TRANSFAC + 35965452 35965466 1.0E-06 CCAGGGTAACATGCG 15 V_SFPI1_04_M02896 TRANSFAC + 35967976 35967989 7.0E-06 TTTATTCAGGAACC 14 V_KLF7_03_M02773 TRANSFAC - 35965578 35965593 4.0E-06 CTGACCCCGCCCCTCG 16 V_MEF2_Q6_01_M00941 TRANSFAC + 35966308 35966319 1.0E-06 AGCTTTATTTAA 12 V_SP1_01_M00008 TRANSFAC + 35965581 35965590 3.0E-06 GGGGCGGGGT 10 V_SOX11_03_M02795 TRANSFAC - 35968366 35968382 5.0E-06 TTAAAAACAATAAAACC 17 V_EGR2_01_M00246 TRANSFAC + 35965889 35965900 4.0E-06 TTGTGTGGGCGT 12 V_SOX9_B1_M00410 TRANSFAC - 35968368 35968381 1.0E-06 TAAAAACAATAAAA 14 V_ISGF4G_04_M02875 TRANSFAC - 35968368 35968381 9.0E-06 TAAAAACAATAAAA 14 V_BCL6B_04_M02844 TRANSFAC - 35968355 35968370 1.0E-05 AAACCCACCCCTCACA 16 V_SOX15_03_M02799 TRANSFAC - 35968366 35968382 2.0E-06 TTAAAAACAATAAAACC 17 V_MYOD_Q6_02_M02100 TRANSFAC + 35966573 35966581 4.0E-06 CAGCTGTCA 9 V_FAC1_01_M00456 TRANSFAC - 35966009 35966022 0.0E+00 ACACACAACACACA 14 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC + 35968606 35968614 8.0E-06 GAGGGTGGG 9 V_FOXL1_02_M02857 TRANSFAC - 35968369 35968384 7.0E-06 AGTTAAAAACAATAAA 16 V_FPM315_01_M01587 TRANSFAC + 35965539 35965550 0.0E+00 GAGGGAGGAGGG 12 V_VDR_Q6_M00961 TRANSFAC + 35966405 35966416 1.0E-06 CCCTTTGAACCT 12 V_TCF4_Q5_M00671 TRANSFAC + 35966406 35966413 1.0E-05 CCTTTGAA 8 V_ZFP281_01_M01597 TRANSFAC + 35968578 35968588 9.0E-06 TGGGGGAGGGA 11 V_TITF1_Q3_M00432 TRANSFAC + 35965257 35965266 2.0E-06 ACTCAAGTTT 10 V_LEF1TCF1_Q4_M00978 TRANSFAC + 35965236 35965246 5.0E-06 ACTTTGTAGTT 11 V_LEF1TCF1_Q4_M00978 TRANSFAC + 35966406 35966416 9.0E-06 CCTTTGAACCT 11 V_SOX8_03_M02808 TRANSFAC + 35968366 35968382 0.0E+00 GGTTTTATTGTTTTTAA 17 V_SOX14_04_M02901 TRANSFAC + 35968356 35968372 7.0E-06 GTGAGGGGTGGGTTTTA 17 V_SRF_06_M02916 TRANSFAC - 35968367 35968383 3.0E-06 GTTAAAAACAATAAAAC 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 35965319 35965336 9.0E-06 GGACAAAAGGAAGCAGAG 18 V_SOX2_Q6_M01272 TRANSFAC + 35968366 35968381 7.0E-06 GGTTTTATTGTTTTTA 16 V_SOX12_03_M02796 TRANSFAC + 35968370 35968383 0.0E+00 TTATTGTTTTTAAC 14 V_PIT1_Q6_M00802 TRANSFAC - 35965033 35965050 4.0E-06 TCTGCATTTTTAACAACA 18 V_SRY_05_M02917 TRANSFAC - 35968367 35968383 1.0E-05 GTTAAAAACAATAAAAC 17 V_SP1_Q2_01_M00933 TRANSFAC - 35965580 35965589 7.0E-06 CCCCGCCCCT 10 V_ARP1_01_M00155 TRANSFAC + 35966602 35966617 7.0E-06 CCCGCCCTTGGCCCCT 16 V_SP1_Q4_01_M00932 TRANSFAC + 35965579 35965591 5.0E-06 GAGGGGCGGGGTC 13 V_FEV_01_M02269 TRANSFAC + 35969218 35969225 1.0E-05 CAGGAAAT 8 V_PAX4_04_M00380 TRANSFAC - 35968351 35968380 5.0E-06 AAAAACAATAAAACCCACCCCTCACACCGT 30 V_PAX4_04_M00380 TRANSFAC - 35968597 35968626 5.0E-06 AGAATTTACCACCCCACCCTCTCCTACTCC 30 V_SMAD1_01_M01590 TRANSFAC - 35968369 35968380 4.0E-06 AAAAACAATAAA 12 V_SOX14_03_M02798 TRANSFAC - 35968368 35968383 1.0E-05 GTTAAAAACAATAAAA 16 V_NANOG_02_M01247 TRANSFAC - 35968365 35968384 2.0E-06 AGTTAAAAACAATAAAACCC 20 V_NANOG_02_M01247 TRANSFAC - 35968478 35968497 2.0E-06 TTTGAAGATGAAAAGCAACA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.