Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CSE1L Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1434 CSE1 chromosome segregation 1-like (yeast) chr20 + 47657782 - 47663282 47662782 Transcription Factor Binding Sites   Download all TFBS in the CSE1L promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 47662313 47662328 7.0E-06 GAAGGTGATGAGGGCA 16 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 47662795 47662805 1.0E-05 GCCCCGCCCCC 11 TBX1_TBX_DBD_dimeric_23_1 SELEX - 47662583 47662605 3.0E-06 CTTGGCACGTAGGAGGTGTTCAA 23 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 47663484 47663500 9.0E-06 GAGGTTAGAGAAGGGTG 17 ZNF232_C2H2_full_monomeric_19_1 SELEX - 47662572 47662590 2.0E-06 GTGTTCAATGTTGATCGAT 19 NFYA_MA0060.1 JASPAR - 47663276 47663291 0.0E+00 CGCAGCCAATCAGCGC 16 Klf4_MA0039.2 JASPAR + 47662772 47662781 5.0E-06 TGGGTGGGGC 10 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 47662218 47662233 5.0E-06 TAAATGCTCTAAAGTG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 47662218 47662233 3.0E-06 TAAATGCTCTAAAGTG 16 SOX8_HMG_full_dimeric_13_1 SELEX + 47663561 47663573 2.0E-06 GAGAATTCTAGTC 13 SP1_MA0079.2 JASPAR + 47662796 47662805 7.0E-06 CCCCGCCCCC 10 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX - 47663665 47663680 4.0E-06 AATTCCAAAGTCTATG 16 SP4_C2H2_full_monomeric_17_1 SELEX + 47662792 47662808 1.0E-06 CTGGCCCCGCCCCCTGC 17 NFATC1_NFAT_full_dimeric_15_1 SELEX + 47662655 47662669 6.0E-06 GTTCCTCTTTGGAAA 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 47662655 47662669 4.0E-06 TTTCCAAAGAGGAAC 15 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 47662562 47662572 9.0E-06 TCCAAGGTCGT 11 RARA_nuclearreceptor_full_dimeric_15_1 SELEX - 47662758 47662772 8.0E-06 AAGTTCGAAGGGCCA 15 RORA_2_MA0072.1 JASPAR + 47662614 47662627 7.0E-06 TCAAAATGGGTCAG 14 Zfx_MA0146.1 JASPAR + 47663389 47663402 3.0E-06 GGCGGCGAGGCCTG 14 V_EBF_Q6_M00977 TRANSFAC + 47663131 47663141 1.0E-06 TTCCCTAGGGA 11 V_EBF_Q6_M00977 TRANSFAC - 47663132 47663142 7.0E-06 CTCCCTAGGGA 11 V_AREB6_03_M00414 TRANSFAC - 47663177 47663188 7.0E-06 CCGCACCTGGGC 12 V_SMAD3_Q6_01_M01888 TRANSFAC + 47659821 47659833 1.0E-06 AGACAGACACAAG 13 V_ZFX_01_M01593 TRANSFAC - 47663390 47663405 0.0E+00 GGGCAGGCCTCGCCGC 16 V_RELBP52_01_M01239 TRANSFAC - 47663590 47663599 8.0E-06 GGGGATTTCT 10 V_RORA_Q4_M01138 TRANSFAC + 47662616 47662626 2.0E-06 AAAATGGGTCA 11 V_SP1_Q6_01_M00931 TRANSFAC - 47662795 47662804 4.0E-06 GGGGCGGGGC 10 V_SOX11_04_M02899 TRANSFAC + 47663549 47663562 1.0E-05 TGAATTGTTTGTGA 14 V_SP1_03_M02281 TRANSFAC + 47662796 47662805 7.0E-06 CCCCGCCCCC 10 V_STAT6_01_M00494 TRANSFAC - 47662232 47662239 7.0E-06 TATTTCCA 8 V_NERF_Q2_M00531 TRANSFAC + 47662256 47662273 8.0E-06 GAACAGGAAGAAGGTGGG 18 V_LYF1_01_M00141 TRANSFAC + 47663631 47663639 3.0E-06 TTTGGGAGA 9 V_NFY_Q6_01_M00775 TRANSFAC - 47663280 47663292 9.0E-06 GCGCAGCCAATCA 13 V_NFAT2_01_M01748 TRANSFAC + 47659870 47659878 8.0E-06 GTGGAAAAT 9 V_RPC155_01_M01798 TRANSFAC + 47662469 47662484 0.0E+00 CCAGGAGTTCGAGACC 16 V_GC_01_M00255 TRANSFAC - 47662793 47662806 3.0E-06 AGGGGGCGGGGCCA 14 V_SP4_03_M02810 TRANSFAC + 47662794 47662810 9.0E-06 GGCCCCGCCCCCTGCAG 17 Hand1_Tcfe2a_MA0092.1 JASPAR - 47663696 47663705 9.0E-06 CGTCTGGAAT 10 V_ZBP89_Q4_M01816 TRANSFAC - 47663612 47663621 4.0E-06 CCCTCCCCCA 10 V_SP1_Q6_M00196 TRANSFAC - 47662794 47662806 0.0E+00 AGGGGGCGGGGCC 13 V_SP1SP3_Q4_M01219 TRANSFAC + 47662798 47662808 8.0E-06 CCGCCCCCTGC 11 V_CDP_02_M00102 TRANSFAC + 47662569 47662583 4.0E-06 TGGATCGATCAACAT 15 V_SP4_Q5_M01273 TRANSFAC + 47662795 47662805 1.0E-06 GCCCCGCCCCC 11 V_ELF1_Q6_M00746 TRANSFAC + 47662255 47662266 9.0E-06 GGAACAGGAAGA 12 V_CAAT_01_M00254 TRANSFAC - 47663280 47663291 5.0E-06 CGCAGCCAATCA 12 V_ALPHACP1_01_M00687 TRANSFAC - 47663279 47663289 1.0E-06 CAGCCAATCAG 11 V_NFYC_Q5_M02107 TRANSFAC - 47663276 47663289 0.0E+00 CAGCCAATCAGCGC 14 V_SMAD3_03_M02794 TRANSFAC + 47659757 47659773 5.0E-06 TGTGTCCAGACATGATC 17 V_NFY_01_M00287 TRANSFAC - 47663276 47663291 0.0E+00 CGCAGCCAATCAGCGC 16 V_BDP1_01_M01796 TRANSFAC - 47662473 47662484 2.0E-06 GGTCTCGAACTC 12 V_NRSF_01_M00256 TRANSFAC - 47663170 47663190 4.0E-06 CGCCGCACCTGGGCCAGAGAC 21 V_ESRRA_03_M02748 TRANSFAC - 47662558 47662574 5.0E-06 GATCCAAGGTCGTGCAC 17 V_SMAD_Q6_01_M00974 TRANSFAC + 47659820 47659830 6.0E-06 TAGACAGACAC 11 V_SMAD3_Q6_M00701 TRANSFAC - 47659821 47659829 3.0E-06 TGTCTGTCT 9 V_DR3_Q4_M00966 TRANSFAC - 47662520 47662540 0.0E+00 AGAGAACTTCCTGCCCCTCTT 21 V_SP1_Q2_01_M00933 TRANSFAC + 47662796 47662805 4.0E-06 CCCCGCCCCC 10 V_ARP1_01_M00155 TRANSFAC - 47662464 47662479 7.0E-06 CGAACTCCTGGCCTCA 16 V_ARP1_01_M00155 TRANSFAC + 47662601 47662616 1.0E-05 CCAAGCCCTGACATCA 16 V_NFYA_Q5_M02106 TRANSFAC - 47663276 47663289 0.0E+00 CAGCCAATCAGCGC 14 V_SP1_Q4_01_M00932 TRANSFAC - 47662794 47662806 0.0E+00 AGGGGGCGGGGCC 13 V_TAACC_B_M00331 TRANSFAC - 47663122 47663144 6.0E-06 CGCTCCCTAGGGAAGCCGAAGAC 23 V_PAX4_04_M00380 TRANSFAC + 47659872 47659901 7.0E-06 GGAAAATGGTAAAGTCATCAGGCTCATTCT 30 V_RORA2_01_M00157 TRANSFAC + 47662615 47662627 6.0E-06 CAAAATGGGTCAG 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.