Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CRYGA Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1418 crystallin, gamma A chr2 - 209027797 - 209033297 209028297 Transcription Factor Binding Sites   Download all TFBS in the CRYGA promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX + 209030309 209030328 7.0E-06 ATGAAGTAGCATAAGGTCAC 20 VSX1_homeodomain_full_monomeric_11_1 SELEX - 209029721 209029731 4.0E-06 AGCTAATTAGG 11 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 209030135 209030152 1.0E-06 GCAATCAATGACAGATTA 18 EN2_homeodomain_full_monomeric_10_1 SELEX + 209029721 209029730 2.0E-06 CCTAATTAGC 10 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 209030136 209030152 8.0E-06 CAATCAATGACAGATTA 17 Zfp652_C2H2_DBD_monomeric_13_1 SELEX - 209030165 209030177 2.0E-06 CCAAAGAGTTAAT 13 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 209030150 209030162 4.0E-06 AAAATAAAATTAA 13 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 209030420 209030436 0.0E+00 AAAAACAGTTGTAAAGA 17 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX + 209030131 209030147 9.0E-06 AAAGGCAATCAATGACA 17 SRY_HMG_DBD_dimeric_16_1 SELEX + 209030516 209030531 7.0E-06 TACAATTCCAATTTTC 16 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 209029988 209029999 2.0E-06 AAAATGCTGATT 12 CUX1_CUT_DBD_dimeric_17_1 SELEX + 209030138 209030154 1.0E-06 ATCAATGACAGATTAAT 17 POU1F1_POU_DBD_monomeric_14_1 SELEX - 209029986 209029999 3.0E-06 AAAATGCTGATTAG 14 Alx1_homeodomain_DBD_dimeric_13_1 SELEX - 209030150 209030162 8.0E-06 AAAATAAAATTAA 13 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 209029982 209029996 7.0E-06 ATGCTGATTAGGCAC 15 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 209029599 209029612 6.0E-06 AAAAAATGTTTCCT 14 PROP1_homeodomain_full_dimeric_11_1 SELEX - 209030151 209030161 8.0E-06 AAATAAAATTA 11 POU3F3_POU_DBD_monomeric_13_1 SELEX - 209029987 209029999 6.0E-06 AAAATGCTGATTA 13 SOX8_HMG_full_dimeric_13_1 SELEX - 209029928 209029940 3.0E-06 ATGAATGTCAGTA 13 ALX3_homeodomain_full_dimeric_13_1 SELEX - 209030150 209030162 6.0E-06 AAAATAAAATTAA 13 EMX1_homeodomain_DBD_monomeric_10_1 SELEX + 209029721 209029730 5.0E-06 CCTAATTAGC 10 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 209029998 209030011 8.0E-06 TTGGAAAGGTACTA 14 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 209030150 209030162 8.0E-06 AAAATAAAATTAA 13 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 209029981 209029997 3.0E-06 TGTGCCTAATCAGCATT 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 209029981 209029997 2.0E-06 AATGCTGATTAGGCACA 17 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 209030150 209030162 2.0E-06 AAAATAAAATTAA 13 NOTO_homeodomain_DBD_monomeric_10_1 SELEX + 209029721 209029730 7.0E-06 CCTAATTAGC 10 NFATC1_NFAT_full_dimeric_20_1 SELEX - 209029595 209029614 8.0E-06 TGAGGAAACATTTTTTTCTC 20 MAFK_bZIP_full_dimeric_15_1 SELEX + 209029982 209029996 8.0E-06 GTGCCTAATCAGCAT 15 MAFK_bZIP_full_dimeric_15_1 SELEX - 209029982 209029996 4.0E-06 ATGCTGATTAGGCAC 15 Lhx3_MA0135.1 JASPAR - 209030144 209030156 5.0E-06 AAATTAATCTGTC 13 Lhx3_MA0135.1 JASPAR + 209030147 209030159 4.0E-06 AGATTAATTTTAT 13 YY2_C2H2_full_monomeric_11_1 SELEX + 209029817 209029827 5.0E-06 ACCACCATTTT 11 EN1_homeodomain_DBD_monomeric_10_1 SELEX + 209029721 209029730 5.0E-06 CCTAATTAGC 10 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 209029979 209029999 0.0E+00 CATGTGCCTAATCAGCATTTT 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 209029979 209029999 0.0E+00 AAAATGCTGATTAGGCACATG 21 PAX4_PAX_full_monomeric_8_1 SELEX + 209029722 209029729 7.0E-06 CTAATTAG 8 PAX4_PAX_full_monomeric_8_1 SELEX - 209029722 209029729 7.0E-06 CTAATTAG 8 GBX1_homeodomain_DBD_monomeric_10_1 SELEX + 209029721 209029730 4.0E-06 CCTAATTAGC 10 NRL_bZIP_DBD_monomeric_11_1 SELEX - 209029989 209029999 3.0E-06 AAAATGCTGAT 11 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 209029914 209029929 5.0E-06 TACACATAATACATTT 16 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 209030135 209030152 2.0E-06 GCAATCAATGACAGATTA 18 LHX2_homeodomain_DBD_monomeric_10_1 SELEX + 209029721 209029730 9.0E-06 CCTAATTAGC 10 LHX2_homeodomain_DBD_monomeric_10_1 SELEX - 209029721 209029730 8.0E-06 GCTAATTAGG 10 CUX2_CUT_DBD_dimeric_18_1 SELEX - 209030149 209030166 9.0E-06 ATCCAAAATAAAATTAAT 18 POU6F2_POU_full_monomeric_10_1 SELEX - 209029721 209029730 7.0E-06 GCTAATTAGG 10 MAFG_bZIP_full_dimeric_21_1 SELEX + 209029979 209029999 1.0E-06 CATGTGCCTAATCAGCATTTT 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 209029979 209029999 1.0E-06 AAAATGCTGATTAGGCACATG 21 Lhx8_homeodomain_DBD_monomeric_8_1 SELEX + 209029722 209029729 7.0E-06 CTAATTAG 8 Lhx8_homeodomain_DBD_monomeric_8_1 SELEX - 209029722 209029729 7.0E-06 CTAATTAG 8 MAFK_bZIP_full_monomeric_12_1 SELEX - 209029989 209030000 7.0E-06 CAAAATGCTGAT 12 RUNX1_MA0002.2 JASPAR + 209030453 209030463 6.0E-06 AGCTGTGGTTT 11 EMX2_homeodomain_DBD_monomeric_10_1 SELEX + 209029721 209029730 9.0E-06 CCTAATTAGC 10 EMX2_homeodomain_DBD_monomeric_10_1 SELEX - 209029721 209029730 5.0E-06 GCTAATTAGG 10 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 209030135 209030152 2.0E-06 GCAATCAATGACAGATTA 18 EN1_homeodomain_full_monomeric_8_1 SELEX + 209029722 209029729 7.0E-06 CTAATTAG 8 EN1_homeodomain_full_monomeric_8_1 SELEX - 209029722 209029729 7.0E-06 CTAATTAG 8 LHX6_homeodomain_full_monomeric_10_1 SELEX + 209029721 209029730 8.0E-06 CCTAATTAGC 10 V_FOXP1_01_M00987 TRANSFAC + 209029921 209029940 6.0E-06 TTATGTGTACTGACATTCAT 20 V_FOXP1_01_M00987 TRANSFAC + 209030150 209030169 1.0E-06 TTAATTTTATTTTGGATTAA 20 V_FOXP1_01_M00987 TRANSFAC - 209030380 209030399 0.0E+00 TTATTTTTGATGTTGAGCTT 20 V_CDP_03_M01342 TRANSFAC - 209029937 209029953 2.0E-06 ACAACTTGATCACATGA 17 V_ER_Q6_02_M00959 TRANSFAC + 209030321 209030331 5.0E-06 AAGGTCACAGT 11 V_AML_Q6_M00769 TRANSFAC + 209030451 209030465 8.0E-06 AGAGCTGTGGTTTTA 15 V_HSF1_Q6_M01023 TRANSFAC - 209030279 209030295 9.0E-06 CTGCTGGAGAATTCAGA 17 V_OBOX5_05_M03066 TRANSFAC + 209030142 209030158 3.0E-06 ATGACAGATTAATTTTA 17 V_MAFK_03_M02776 TRANSFAC - 209029987 209030001 1.0E-06 CCAAAATGCTGATTA 15 V_BCL6B_03_M02740 TRANSFAC + 209030335 209030350 5.0E-06 TTTTTTTAAGAAAATG 16 V_HMGIY_Q3_M01010 TRANSFAC - 209030432 209030446 1.0E-05 AGTACATTTTTCTTT 15 V_BCL6_01_M01183 TRANSFAC + 209030087 209030102 3.0E-06 TTTATTGAAATGATTT 16 V_BCL6_01_M01183 TRANSFAC - 209030379 209030394 7.0E-06 TTTGATGTTGAGCTTT 16 V_MAFB_05_M02775 TRANSFAC - 209029984 209030000 3.0E-06 CAAAATGCTGATTAGGC 17 V_GM397_03_M02760 TRANSFAC + 209029920 209029936 8.0E-06 ATTATGTGTACTGACAT 17 V_HOXA13_02_M01297 TRANSFAC - 209030153 209030161 4.0E-06 AAATAAAAT 9 V_CBF_02_M01080 TRANSFAC + 209030451 209030466 2.0E-06 AGAGCTGTGGTTTTAA 16 V_PROP1_01_M01294 TRANSFAC + 209030151 209030161 1.0E-06 TAATTTTATTT 11 V_FOXJ1_04_M02854 TRANSFAC - 209029947 209029961 2.0E-06 ATGTAATAACAACTT 15 V_OTX_Q1_M01117 TRANSFAC + 209030148 209030155 5.0E-06 GATTAATT 8 V_GBX2_01_M01382 TRANSFAC - 209029717 209029733 6.0E-06 GCAGCTAATTAGGGGGA 17 V_CUX1_03_M02958 TRANSFAC - 209029937 209029953 2.0E-06 ACAACTTGATCACATGA 17 V_OCT_C_M00210 TRANSFAC + 209030107 209030119 4.0E-06 ATTCTTTTCATAT 13 V_AFP1_Q6_M00616 TRANSFAC + 209030392 209030402 7.0E-06 AAAAATAACAC 11 V_PRX2_Q2_M02115 TRANSFAC - 209030150 209030158 5.0E-06 TAAAATTAA 9 V_BRN2_01_M00145 TRANSFAC - 209030154 209030169 2.0E-06 TTAATCCAAAATAAAA 16 V_TCFAP2E_04_M02926 TRANSFAC + 209029592 209029605 7.0E-06 ACCGAGAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC - 209030332 209030345 6.0E-06 TCTTAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 209030333 209030346 0.0E+00 TTCTTAAAAAAAAA 14 V_LDSPOLYA_B_M00317 TRANSFAC - 209030117 209030132 2.0E-06 TTACTGTGTTCTCATA 16 V_LHX8_01_M01440 TRANSFAC - 209029717 209029733 6.0E-06 GCAGCTAATTAGGGGGA 17 V_LHX8_01_M01440 TRANSFAC + 209029718 209029734 0.0E+00 CCCCCTAATTAGCTGCA 17 V_EVX2_01_M01386 TRANSFAC + 209029717 209029733 2.0E-06 TCCCCCTAATTAGCTGC 17 V_EVX2_01_M01386 TRANSFAC - 209029718 209029734 1.0E-06 TGCAGCTAATTAGGGGG 17 V_ELF4_04_M02850 TRANSFAC - 209030151 209030167 1.0E-06 AATCCAAAATAAAATTA 17 V_ELF4_04_M02850 TRANSFAC - 209030327 209030343 1.0E-06 TTAAAAAAAAAAACTGT 17 V_ELF4_04_M02850 TRANSFAC - 209030328 209030344 2.0E-06 CTTAAAAAAAAAAACTG 17 V_ELF4_04_M02850 TRANSFAC - 209030329 209030345 0.0E+00 TCTTAAAAAAAAAAACT 17 V_ELF4_04_M02850 TRANSFAC - 209030330 209030346 2.0E-06 TTCTTAAAAAAAAAAAC 17 V_ELF4_04_M02850 TRANSFAC - 209030331 209030347 0.0E+00 TTTCTTAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 209030332 209030348 9.0E-06 TTTTCTTAAAAAAAAAA 17 V_OBOX5_02_M01480 TRANSFAC + 209030142 209030158 3.0E-06 ATGACAGATTAATTTTA 17 V_ZFP105_03_M02827 TRANSFAC - 209030328 209030342 4.0E-06 TAAAAAAAAAAACTG 15 V_ZFP105_03_M02827 TRANSFAC - 209030329 209030343 6.0E-06 TTAAAAAAAAAAACT 15 V_ZFP105_03_M02827 TRANSFAC - 209030330 209030344 6.0E-06 CTTAAAAAAAAAAAC 15 V_ZFP105_03_M02827 TRANSFAC - 209030331 209030345 9.0E-06 TCTTAAAAAAAAAAA 15 V_RUNX1_01_M02257 TRANSFAC + 209030453 209030463 6.0E-06 AGCTGTGGTTT 11 V_TEF_Q6_M00672 TRANSFAC - 209029950 209029961 1.0E-05 ATGTAATAACAA 12 V_SOX8_04_M02912 TRANSFAC + 209029933 209029946 1.0E-06 ACATTCATGTGATC 14 V_HOXA3_02_M01337 TRANSFAC - 209029721 209029734 9.0E-06 TGCAGCTAATTAGG 14 V_IRF4_04_M02872 TRANSFAC - 209029589 209029603 8.0E-06 TTTTTTCTCGGTAGC 15 V_HOXA3_07_M02869 TRANSFAC + 209030492 209030505 9.0E-06 AGAATCTATTATGA 14 V_FOXK1_04_M02856 TRANSFAC - 209029948 209029962 9.0E-06 TATGTAATAACAACT 15 V_FOXK1_04_M02856 TRANSFAC + 209030390 209030404 4.0E-06 TCAAAAATAACACTT 15 V_E47_02_M00071 TRANSFAC + 209029557 209029572 9.0E-06 ACGCGCAGGTGGTAAA 16 V_PMX2A_01_M01444 TRANSFAC - 209029719 209029734 1.0E-05 TGCAGCTAATTAGGGG 16 V_OCT1_04_M00138 TRANSFAC - 209030092 209030114 9.0E-06 AAAAGAATGTTTAAATCATTTCA 23 V_OCT1_04_M00138 TRANSFAC - 209030152 209030174 9.0E-06 AAGAGTTAATCCAAAATAAAATT 23 V_GR_01_M00955 TRANSFAC - 209030013 209030039 6.0E-06 TACTAGGAGGGAAGATGTTCTGGTCTT 27 V_MEF2_04_M00233 TRANSFAC - 209030330 209030351 2.0E-06 ACATTTTCTTAAAAAAAAAAAC 22 V_MEF2_04_M00233 TRANSFAC + 209030411 209030432 3.0E-06 AGTTGTACCAAAAACAGTTGTA 22 V_ERBETA_Q5_M01875 TRANSFAC + 209030529 209030543 8.0E-06 TTCTAAGTGACCTGC 15 V_TCF7_03_M02817 TRANSFAC + 209030384 209030400 6.0E-06 TCAACATCAAAAATAAC 17 V_MEF2_Q6_01_M00941 TRANSFAC - 209030390 209030401 4.0E-06 TGTTATTTTTGA 12 V_EMX2_01_M01461 TRANSFAC + 209029718 209029734 6.0E-06 CCCCCTAATTAGCTGCA 17 V_SOX17_04_M02904 TRANSFAC + 209029929 209029945 1.0E-06 ACTGACATTCATGTGAT 17 V_HOXD9_Q2_M01834 TRANSFAC - 209029919 209029928 9.0E-06 ACACATAATA 10 V_PTF1BETA_Q6_M00657 TRANSFAC + 209030375 209030388 9.0E-06 GAAGAAAGCTCAAC 14 V_MTF1_06_M02882 TRANSFAC - 209030332 209030345 5.0E-06 TCTTAAAAAAAAAA 14 V_T3R_01_M00239 TRANSFAC + 209030317 209030332 3.0E-06 GCATAAGGTCACAGTT 16 V_AP4_01_M00005 TRANSFAC - 209030445 209030462 4.0E-06 AACCACAGCTCTTGCCAG 18 V_FOXL1_02_M02857 TRANSFAC - 209030152 209030167 1.0E-06 AATCCAAAATAAAATT 16 V_HDX_01_M01333 TRANSFAC - 209030092 209030108 4.0E-06 ATGTTTAAATCATTTCA 17 V_IPF1_01_M01233 TRANSFAC + 209029720 209029729 7.0E-06 CCCTAATTAG 10 V_IPF1_01_M01233 TRANSFAC - 209029722 209029731 4.0E-06 AGCTAATTAG 10 V_MEIS1_01_M00419 TRANSFAC + 209030140 209030151 6.0E-06 CAATGACAGATT 12 V_ZBTB4_04_M02929 TRANSFAC + 209030136 209030151 8.0E-06 CAATCAATGACAGATT 16 V_TCF7_04_M02921 TRANSFAC + 209029951 209029965 8.0E-06 TGTTATTACATACAT 15 V_TCF7_04_M02921 TRANSFAC - 209030334 209030348 7.0E-06 TTTTCTTAAAAAAAA 15 V_OTX2_01_M01387 TRANSFAC + 209030142 209030158 7.0E-06 ATGACAGATTAATTTTA 17 V_OSR1_04_M02888 TRANSFAC - 209030307 209030322 7.0E-06 TTATGCTACTTCATTG 16 V_OSR1_04_M02888 TRANSFAC + 209030361 209030376 7.0E-06 ATATGCTTCTAAAAGA 16 V_SRF_06_M02916 TRANSFAC - 209030327 209030343 0.0E+00 TTAAAAAAAAAAACTGT 17 V_SRF_06_M02916 TRANSFAC - 209030328 209030344 0.0E+00 CTTAAAAAAAAAAACTG 17 V_SRF_06_M02916 TRANSFAC - 209030329 209030345 0.0E+00 TCTTAAAAAAAAAAACT 17 V_SRF_06_M02916 TRANSFAC - 209030330 209030346 6.0E-06 TTCTTAAAAAAAAAAAC 17 V_SRF_06_M02916 TRANSFAC - 209030331 209030347 8.0E-06 TTTCTTAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 209030427 209030443 7.0E-06 GTTGTAAAGAAAAATGT 17 V_NKX11_01_M01334 TRANSFAC - 209029717 209029733 7.0E-06 GCAGCTAATTAGGGGGA 17 V_VMAF_01_M00035 TRANSFAC - 209029980 209029998 0.0E+00 AAATGCTGATTAGGCACAT 19 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 209030456 209030463 1.0E-05 TGTGGTTT 8 V_EFC_Q6_M00626 TRANSFAC + 209029963 209029976 9.0E-06 CATTGATAGGCTAA 14 V_FOXO1_04_M01969 TRANSFAC - 209030324 209030343 8.0E-06 TTAAAAAAAAAAACTGTGAC 20 V_YY1_01_M00059 TRANSFAC + 209029816 209029832 4.0E-06 TACCACCATTTTCAGAA 17 V_SOX1_03_M02802 TRANSFAC - 209030086 209030101 1.0E-06 AATCATTTCAATAAAG 16 V_IRF1_01_M00062 TRANSFAC + 209030391 209030403 8.0E-06 CAAAAATAACACT 13 V_MEF2_01_M00006 TRANSFAC + 209030388 209030403 7.0E-06 CATCAAAAATAACACT 16 V_HMEF2_Q6_M00406 TRANSFAC + 209030388 209030403 8.0E-06 CATCAAAAATAACACT 16 V_TFE_Q6_M01029 TRANSFAC + 209029937 209029944 1.0E-05 TCATGTGA 8 V_HOXA10_01_M01464 TRANSFAC - 209030150 209030165 1.0E-06 TCCAAAATAAAATTAA 16 V_HOXD10_01_M01375 TRANSFAC - 209030081 209030097 8.0E-06 ATTTCAATAAAGCATTA 17 V_HOXD10_01_M01375 TRANSFAC - 209030333 209030349 8.0E-06 ATTTTCTTAAAAAAAAA 17 V_TCF11MAFG_01_M00284 TRANSFAC + 209030137 209030158 8.0E-06 AATCAATGACAGATTAATTTTA 22 V_OBOX5_01_M01381 TRANSFAC + 209030142 209030158 1.0E-06 ATGACAGATTAATTTTA 17 V_TCF3_05_M02920 TRANSFAC + 209029591 209029605 3.0E-06 TACCGAGAAAAAAAT 15 V_TCF3_05_M02920 TRANSFAC - 209030152 209030166 1.0E-06 ATCCAAAATAAAATT 15 V_TCF3_05_M02920 TRANSFAC - 209030153 209030167 1.0E-06 AATCCAAAATAAAAT 15 V_IPF1_03_M01235 TRANSFAC - 209029722 209029731 4.0E-06 AGCTAATTAG 10 V_DMRT1_01_M01146 TRANSFAC - 209029598 209029612 3.0E-06 AGGAAACATTTTTTT 15 V_OTX1_01_M01366 TRANSFAC + 209030142 209030158 5.0E-06 ATGACAGATTAATTTTA 17 V_OBOX6_06_M03067 TRANSFAC - 209030142 209030158 1.0E-06 TAAAATTAATCTGTCAT 17 V_PAX4_04_M00380 TRANSFAC - 209030306 209030335 6.0E-06 AAAAACTGTGACCTTATGCTACTTCATTGT 30 V_PAX4_04_M00380 TRANSFAC + 209030374 209030403 8.0E-06 AGAAGAAAGCTCAACATCAAAAATAACACT 30 V_ER_Q6_M00191 TRANSFAC - 209030320 209030338 1.0E-06 AAAAAAAACTGTGACCTTA 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.