Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PTCHD1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 139411 patched domain containing 1 chrX + 23347984 - 23353484 23352984 Transcription Factor Binding Sites   Download all TFBS in the PTCHD1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX - 23351649 23351659 1.0E-05 AAGGTGTGAGA 11 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 23348772 23348789 9.0E-06 TCTTTTAAAAACGAATTA 18 ZNF306_C2H2_full_monomeric_14_1 SELEX + 23352466 23352479 9.0E-06 GGGTGTAGCCTGGA 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 23348772 23348788 1.0E-06 CTTTTAAAAACGAATTA 17 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX + 23352394 23352410 9.0E-06 GAGGGCAGAGAAGGGGA 17 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX - 23348771 23348782 6.0E-06 AAAACGAATTAC 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 23352120 23352135 9.0E-06 TAAACGGTTCTTATTT 16 EOMES_TBX_DBD_monomeric_13_1 SELEX - 23351647 23351659 8.0E-06 AAGGTGTGAGAGT 13 ZNF740_C2H2_full_monomeric_10_1 SELEX + 23351068 23351077 3.0E-06 CCCCCCCCAC 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 23348859 23348872 9.0E-06 GAAAACAGACAAAA 14 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 23350032 23350047 3.0E-06 TGACATTAAAAGGCCG 16 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 23350032 23350047 1.0E-06 CGGCCTTTTAATGTCA 16 SP1_MA0079.2 JASPAR + 23350333 23350342 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR + 23352309 23352318 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 23352434 23352443 3.0E-06 CCCCTCCCCC 10 TBX2_TBX_full_monomeric_11_1 SELEX - 23351649 23351659 4.0E-06 AAGGTGTGAGA 11 INSM1_MA0155.1 JASPAR - 23351169 23351180 3.0E-06 TGCCAGGGGTCG 12 Hltf_MA0109.1 JASPAR - 23351631 23351640 1.0E-05 AACCTTATCT 10 TBX20_TBX_DBD_monomeric_15_1 SELEX - 23351648 23351662 7.0E-06 GCGAAGGTGTGAGAG 15 Zfp740_C2H2_DBD_monomeric_10_1 SELEX + 23351068 23351077 5.0E-06 CCCCCCCCAC 10 ETV6_ETS_full_dimeric_15_1 SELEX - 23351080 23351094 9.0E-06 CAGGAAGAGGAAGGG 15 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 23348772 23348789 1.0E-05 TCTTTTAAAAACGAATTA 18 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 23348859 23348872 1.0E-06 GAAAACAGACAAAA 14 V_RUSH1A_02_M01107 TRANSFAC - 23351631 23351640 1.0E-05 AACCTTATCT 10 V_NFAT_Q4_01_M00935 TRANSFAC + 23352346 23352355 5.0E-06 TTGGAAAATC 10 V_ZFP410_04_M02936 TRANSFAC - 23351663 23351679 7.0E-06 CCTCTCCTCCCCTACAT 17 V_ZFP740_03_M02834 TRANSFAC + 23351063 23351078 6.0E-06 TTCCCCCCCCCCCACT 16 V_ZFP740_03_M02834 TRANSFAC + 23351064 23351079 1.0E-06 TCCCCCCCCCCCACTC 16 V_ZFP740_03_M02834 TRANSFAC + 23351065 23351080 0.0E+00 CCCCCCCCCCCACTCC 16 V_CEBP_01_M00159 TRANSFAC + 23352343 23352355 0.0E+00 TGTTTGGAAAATC 13 V_GABPA_04_M02858 TRANSFAC + 23351058 23351073 4.0E-06 CTTTCTTCCCCCCCCC 16 V_MYB_05_M02779 TRANSFAC - 23352117 23352133 4.0E-06 ATAAGAACCGTTTAAAA 17 V_SP1_03_M02281 TRANSFAC + 23350333 23350342 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC + 23352309 23352318 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 23352434 23352443 3.0E-06 CCCCTCCCCC 10 V_SP1_02_M01303 TRANSFAC - 23352172 23352182 5.0E-06 GGGGTGGGGAG 11 V_LYF1_01_M00141 TRANSFAC - 23350434 23350442 9.0E-06 TTTGGGAAA 9 V_LYF1_01_M00141 TRANSFAC - 23350914 23350922 9.0E-06 TTTGGGAAA 9 V_MEF2A_Q6_M02024 TRANSFAC + 23352115 23352124 3.0E-06 TATTTTAAAC 10 V_HNF6_Q6_M00639 TRANSFAC + 23350491 23350502 9.0E-06 ACAAGTCAATGA 12 V_ZFP105_03_M02827 TRANSFAC - 23352336 23352350 2.0E-06 TCCAAACAAAAAGTA 15 V_POLY_C_M00212 TRANSFAC - 23351691 23351708 6.0E-06 CATTAACCCCCTTCTCTG 18 V_SP4_03_M02810 TRANSFAC + 23352301 23352317 7.0E-06 ACACCCGCCCCCTCCCC 17 V_KROX_Q6_M00982 TRANSFAC + 23352304 23352317 0.0E+00 CCCGCCCCCTCCCC 14 V_MAZ_Q6_01_M02023 TRANSFAC - 23351064 23351077 1.0E-05 GTGGGGGGGGGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 23351667 23351680 1.0E-06 AGGGGAGGAGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 23352170 23352183 6.0E-06 GGGGGTGGGGAGCG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 23352434 23352447 1.0E-06 GGGGGAGGGGAGCG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 23352448 23352461 1.0E-06 AAGGGAGGGGAGGG 14 V_IK2_01_M00087 TRANSFAC - 23350432 23350443 6.0E-06 CTTTGGGAAACC 12 V_IK2_01_M00087 TRANSFAC - 23350912 23350923 2.0E-06 GTTTGGGAAATC 12 V_SP1SP3_Q4_M01219 TRANSFAC + 23351065 23351075 7.0E-06 CCCCCCCCCCC 11 V_SP1SP3_Q4_M01219 TRANSFAC + 23352305 23352315 1.0E-06 CCGCCCCCTCC 11 V_TBX5_01_M01019 TRANSFAC - 23351649 23351660 3.0E-06 GAAGGTGTGAGA 12 V_INSM1_01_M02268 TRANSFAC - 23351169 23351180 3.0E-06 TGCCAGGGGTCG 12 V_GLI3_Q5_01_M01657 TRANSFAC + 23350426 23350434 6.0E-06 GTGGGTGGT 9 V_ZFP187_04_M02934 TRANSFAC - 23350054 23350069 5.0E-06 TCGCCCTCGTCCCTAG 16 V_FAC1_01_M00456 TRANSFAC - 23348853 23348866 6.0E-06 AGACAAAACATGAA 14 V_FOXL1_02_M02857 TRANSFAC - 23352338 23352353 2.0E-06 TTTTCCAAACAAAAAG 16 V_PLAG1_01_M01778 TRANSFAC + 23351687 23351702 4.0E-06 GAGGCAGAGAAGGGGG 16 V_MYOGNF1_01_M00056 TRANSFAC + 23350931 23350959 7.0E-06 TGCTGTTTCCAACGTGCAAGTTCCCAAGT 29 V_FPM315_01_M01587 TRANSFAC - 23350334 23350345 2.0E-06 CGGGGAGGAGGG 12 V_NRF2_Q4_M00821 TRANSFAC - 23350524 23350536 8.0E-06 TTGCTGATTCACC 13 V_TBX15_02_M01264 TRANSFAC - 23350320 23350337 1.0E-06 AGGGGTGGCGGTGGGAAA 18 V_TBX15_02_M01264 TRANSFAC - 23351649 23351666 4.0E-06 ACATGCGAAGGTGTGAGA 18 V_T3RBETA_Q6_01_M02119 TRANSFAC - 23348796 23348812 5.0E-06 GGCTAATATGAGGACAG 17 V_ZFP281_01_M01597 TRANSFAC - 23352174 23352184 5.0E-06 AGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 23352309 23352319 2.0E-06 GGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 23352433 23352443 7.0E-06 CGGGGGAGGGG 11 V_SRF_Q4_M00810 TRANSFAC - 23352121 23352138 8.0E-06 TCCAAATAAGAACCGTTT 18 V_TBX5_Q5_M01044 TRANSFAC + 23351650 23351659 1.0E-06 CTCACACCTT 10 V_HSF_Q6_M00641 TRANSFAC - 23350706 23350718 4.0E-06 TTCCAGAGGCTCC 13 V_ZFP281_04_M02831 TRANSFAC + 23351061 23351075 8.0E-06 TCTTCCCCCCCCCCC 15 V_ZFP281_04_M02831 TRANSFAC + 23351063 23351077 0.0E+00 TTCCCCCCCCCCCAC 15 V_ZFP281_04_M02831 TRANSFAC + 23351064 23351078 2.0E-06 TCCCCCCCCCCCACT 15 V_ZFP281_04_M02831 TRANSFAC + 23352307 23352321 2.0E-06 GCCCCCTCCCCCCAC 15 V_HOMEZ_01_M01429 TRANSFAC + 23348770 23348786 6.0E-06 CGTAATTCGTTTTTAAA 17 V_MEF2_01_M00006 TRANSFAC - 23352110 23352125 4.0E-06 CGTTTAAAATACCCCC 16 V_HMEF2_Q6_M00406 TRANSFAC - 23352110 23352125 2.0E-06 CGTTTAAAATACCCCC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.