Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C9orf131 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 138724 chromosome 9 open reading frame 131 chr9 + 35036101 - 35042722 35042222 Transcription Factor Binding Sites   Download all TFBS in the C9orf131 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PROX1_PROX_DBD_dimeric_12_1 SELEX - 35036473 35036484 8.0E-06 GAAGGCGCCTTA 12 NFYA_MA0060.1 JASPAR - 35041061 35041076 1.0E-06 GTTAGCCAATCAGGAC 16 Pax4_MA0068.1 JASPAR - 35042107 35042136 9.0E-06 AAAAAATTTCCTCTATCAGGCAATTCATGC 30 RUNX3_RUNX_full_monomeric_10_1 SELEX + 35042035 35042044 1.0E-05 TAACCACAAT 10 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 35042035 35042043 1.0E-05 TAACCACAA 9 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX - 35042217 35042233 2.0E-06 AGTTTACCCTGAGGTCA 17 RARA_nuclearreceptor_full_dimeric_17_1 SELEX - 35042217 35042233 3.0E-06 AGTTTACCCTGAGGTCA 17 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 35044266 35044282 1.0E-06 AGCATTCCAGGAATTCC 17 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 35044258 35044274 3.0E-06 GGATACTGAGCATTCCA 17 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 35044267 35044283 0.0E+00 GCATTCCAGGAATTCCT 17 FEV_MA0156.1 JASPAR + 35042367 35042374 1.0E-05 CAGGAAAT 8 TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 35042515 35042526 8.0E-06 TGTCAGCAGTCA 12 TEAD1_TEA_full_dimeric_17_1 SELEX + 35044258 35044274 8.0E-06 GGATACTGAGCATTCCA 17 TEAD1_TEA_full_dimeric_17_1 SELEX - 35044265 35044281 5.0E-06 GAATTCCTGGAATGCTC 17 TEAD1_TEA_full_dimeric_17_1 SELEX + 35044267 35044283 0.0E+00 GCATTCCAGGAATTCCT 17 MEIS2_MEIS_DBD_dimeric_14_1 SELEX + 35042514 35042527 5.0E-06 ATGACTGCTGACAC 14 RXR_RAR_DR5_MA0159.1 JASPAR - 35042217 35042233 2.0E-06 AGTTTACCCTGAGGTCA 17 V_GAF_Q6_M01209 TRANSFAC - 35042460 35042470 3.0E-06 CATATTCCCAG 11 V_BCL6B_03_M02740 TRANSFAC + 35044267 35044282 6.0E-06 GCATTCCAGGAATTCC 16 V_NFY_Q6_M00185 TRANSFAC - 35041064 35041074 1.0E-06 TAGCCAATCAG 11 V_ZEC_01_M01081 TRANSFAC + 35042426 35042438 4.0E-06 CTTGGGAGGTTGC 13 V_HMGIY_Q3_M01010 TRANSFAC + 35042123 35042137 3.0E-06 AGAGGAAATTTTTTT 15 V_AML3_Q6_M01856 TRANSFAC + 35042036 35042043 1.0E-05 AACCACAA 8 V_STAT5B_01_M00459 TRANSFAC + 35044267 35044281 4.0E-06 GCATTCCAGGAATTC 15 V_STAT5B_01_M00459 TRANSFAC - 35044267 35044281 4.0E-06 GAATTCCTGGAATGC 15 V_HEN1_01_M00068 TRANSFAC + 35042342 35042363 2.0E-06 TGCGGCAGCAGCTGCTTCCAGA 22 V_HEN1_01_M00068 TRANSFAC - 35042342 35042363 4.0E-06 TCTGGAAGCAGCTGCTGCCGCA 22 V_NFY_Q6_01_M00775 TRANSFAC - 35041065 35041077 4.0E-06 TGTTAGCCAATCA 13 V_TCFAP2E_04_M02926 TRANSFAC - 35042129 35042142 3.0E-06 AACCAAAAAAAATT 14 V_AR_03_M00956 TRANSFAC + 35042184 35042210 7.0E-06 GGGATGGGAGTTCTTTGTTCTGTGATG 27 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 35042534 35042548 7.0E-06 TGAGGTCATTGGTAT 15 V_BCL6_02_M01185 TRANSFAC + 35044266 35044279 6.0E-06 AGCATTCCAGGAAT 14 V_NFY_C_M00209 TRANSFAC + 35041063 35041076 0.0E+00 CCTGATTGGCTAAC 14 V_ELF4_04_M02850 TRANSFAC - 35042127 35042143 1.0E-06 GAACCAAAAAAAATTTC 17 V_PR_Q2_M00960 TRANSFAC + 35036704 35036713 5.0E-06 GAAAGGACAT 10 V_ZFP105_03_M02827 TRANSFAC - 35042128 35042142 6.0E-06 AACCAAAAAAAATTT 15 V_MYCMAX_02_M00123 TRANSFAC + 35042525 35042536 9.0E-06 CACCACATGTGA 12 V_SOX8_04_M02912 TRANSFAC - 35042541 35042554 6.0E-06 ACATTCATACCAAT 14 V_NFAT_Q6_M00302 TRANSFAC + 35042122 35042133 8.0E-06 TAGAGGAAATTT 12 V_AML2_01_M01759 TRANSFAC + 35042036 35042043 1.0E-05 AACCACAA 8 V_SOX_Q6_M01014 TRANSFAC + 35042194 35042206 2.0E-06 TTCTTTGTTCTGT 13 V_GR_Q6_M00192 TRANSFAC - 35036705 35036723 2.0E-06 TGGCTTAAATATGTCCTTT 19 V_SOX12_04_M02900 TRANSFAC + 35044400 35044415 5.0E-06 CAAAAGACAAAAAACT 16 V_RREB1_01_M00257 TRANSFAC - 35036753 35036766 4.0E-06 CCCCAACCCCCACA 14 V_STAF_02_M00264 TRANSFAC - 35042471 35042491 4.0E-06 GTCACCCACCTTGCCTTGCAC 21 V_BRACH_01_M00150 TRANSFAC - 35042570 35042593 9.0E-06 AGCCTCACATCTAGGGCTTATAGT 24 V_SOX11_03_M02795 TRANSFAC - 35042191 35042207 1.0E-06 CACAGAACAAAGAACTC 17 V_SOX17_04_M02904 TRANSFAC - 35042542 35042558 0.0E+00 GCCCACATTCATACCAA 17 V_ELF1_Q6_M00746 TRANSFAC + 35042120 35042131 1.0E-06 GATAGAGGAAAT 12 V_CREM_Q6_M01820 TRANSFAC - 35036659 35036669 3.0E-06 TAACGTCAGCA 11 V_CAAT_01_M00254 TRANSFAC - 35041065 35041076 8.0E-06 GTTAGCCAATCA 12 V_CREBP1CJUN_01_M00041 TRANSFAC + 35036662 35036669 1.0E-05 TGACGTTA 8 V_ALPHACP1_01_M00687 TRANSFAC - 35041064 35041074 3.0E-06 TAGCCAATCAG 11 V_AP3_Q6_M00690 TRANSFAC + 35042142 35042149 5.0E-06 TCTAAATT 8 V_GABPBETA_Q3_M01876 TRANSFAC + 35036397 35036407 7.0E-06 AGCGGAAATGC 11 V_FAC1_01_M00456 TRANSFAC - 35042129 35042142 5.0E-06 AACCAAAAAAAATT 14 V_FAC1_01_M00456 TRANSFAC + 35044397 35044410 6.0E-06 ATACAAAAGACAAA 14 V_HEN1_02_M00058 TRANSFAC + 35042342 35042363 1.0E-06 TGCGGCAGCAGCTGCTTCCAGA 22 V_HEN1_02_M00058 TRANSFAC - 35042342 35042363 1.0E-06 TCTGGAAGCAGCTGCTGCCGCA 22 V_LUN1_01_M00480 TRANSFAC + 35042449 35042465 9.0E-06 TCCCTGGTGCTCTGGGA 17 V_NFY_01_M00287 TRANSFAC - 35041061 35041076 1.0E-06 GTTAGCCAATCAGGAC 16 V_STAT6_02_M00500 TRANSFAC - 35042368 35042375 1.0E-05 GATTTCCT 8 V_ZFP281_01_M01597 TRANSFAC + 35036755 35036765 9.0E-06 TGGGGGTTGGG 11 V_ZFP281_01_M01597 TRANSFAC + 35042181 35042191 5.0E-06 TGGGGGATGGG 11 V_RXR_RAR_01_M02272 TRANSFAC - 35042217 35042233 2.0E-06 AGTTTACCCTGAGGTCA 17 V_STAT5A_01_M00457 TRANSFAC + 35044267 35044281 4.0E-06 GCATTCCAGGAATTC 15 V_ZFP281_04_M02831 TRANSFAC - 35036753 35036767 6.0E-06 TCCCCAACCCCCACA 15 V_NFE2_01_M00037 TRANSFAC + 35036627 35036637 6.0E-06 TGCTGAGTCCT 11 V_PR_02_M00957 TRANSFAC + 35042184 35042210 5.0E-06 GGGATGGGAGTTCTTTGTTCTGTGATG 27 V_PAX4_02_M00377 TRANSFAC - 35042126 35042136 5.0E-06 AAAAAATTTCC 11 V_UF1H3BETA_Q6_M01068 TRANSFAC + 35042179 35042192 6.0E-06 TGTGGGGGATGGGA 14 V_NFYA_Q5_M02106 TRANSFAC - 35041061 35041074 0.0E+00 TAGCCAATCAGGAC 14 V_TCF3_05_M02920 TRANSFAC - 35042128 35042142 4.0E-06 AACCAAAAAAAATTT 15 V_TCF3_05_M02920 TRANSFAC - 35042129 35042143 4.0E-06 GAACCAAAAAAAATT 15 V_FEV_01_M02269 TRANSFAC + 35042367 35042374 1.0E-05 CAGGAAAT 8 V_PAX4_04_M00380 TRANSFAC - 35042106 35042135 3.0E-06 AAAAATTTCCTCTATCAGGCAATTCATGCT 30 V_SMAD1_01_M01590 TRANSFAC - 35042194 35042205 2.0E-06 CAGAACAAAGAA 12 V_SMAD1_01_M01590 TRANSFAC + 35044402 35044413 3.0E-06 AAAGACAAAAAA 12

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.