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C9orf116 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 138162 chromosome 9 open reading frame 116 chr9 - 138391261 - 138396761 138391761 Transcription Factor Binding Sites   Download all TFBS in the C9orf116 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 138396668 138396686 0.0E+00 CTGCCACTAGAGGGCACCG 19 E2F4_E2F_DBD_dimeric_12_2 SELEX - 138391651 138391662 7.0E-06 TGTGGCGCCCAA 12 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 138392401 138392411 1.0E-05 GCCCCGCCCCC 11 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 138388363 138388379 9.0E-06 AGAAACAAGTGCAAAGA 17 ESR2_MA0258.1 JASPAR - 138388237 138388254 6.0E-06 GAATGTCACAGTCACCTA 18 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX + 138391753 138391762 2.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX - 138391753 138391762 2.0E-06 GTCACGTGAC 10 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX + 138396647 138396664 4.0E-06 TGAGGTCAGCAGAGGTGC 18 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX - 138392160 138392171 9.0E-06 TAAACGATATTT 12 USF1_bHLH_DBD_dimeric_10_1 SELEX + 138391753 138391762 3.0E-06 GTCACGTGAC 10 USF1_bHLH_DBD_dimeric_10_1 SELEX - 138391753 138391762 3.0E-06 GTCACGTGAC 10 RFX2_RFX_DBD_dimeric_15_1 SELEX + 138391733 138391747 1.0E-06 TGTTGCCAAGCGACG 15 ELF3_ETS_full_monomeric_13_1 SELEX - 138391365 138391377 1.0E-05 TACAAGGAAGTGG 13 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX + 138396648 138396664 1.0E-05 GAGGTCAGCAGAGGTGC 17 BHLHE41_bHLH_full_dimeric_10_1 SELEX + 138391753 138391762 1.0E-06 GTCACGTGAC 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 138391753 138391762 1.0E-06 GTCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX + 138388336 138388345 5.0E-06 ATCACCTGAT 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX + 138391753 138391762 3.0E-06 GTCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX - 138391753 138391762 3.0E-06 GTCACGTGAC 10 SP1_MA0079.2 JASPAR + 138392402 138392411 7.0E-06 CCCCGCCCCC 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX + 138391753 138391762 3.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX - 138391753 138391762 3.0E-06 GTCACGTGAC 10 RFX3_RFX_DBD_dimeric_15_1 SELEX + 138391733 138391747 1.0E-06 TGTTGCCAAGCGACG 15 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 138388336 138388345 4.0E-06 ATCACCTGAT 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 138391753 138391762 3.0E-06 GTCACGTGAC 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 138391753 138391762 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX + 138391753 138391762 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX - 138391753 138391762 3.0E-06 GTCACGTGAC 10 CTCF_C2H2_full_monomeric_17_1 SELEX - 138396669 138396685 1.0E-06 GGTGCCCTCTAGTGGCA 17 RFX4_RFX_DBD_dimeric_15_1 SELEX + 138391733 138391747 1.0E-06 TGTTGCCAAGCGACG 15 PPARG_MA0066.1 JASPAR - 138388235 138388254 1.0E-05 GAATGTCACAGTCACCTAAT 20 TFE3_bHLH_DBD_dimeric_10_1 SELEX + 138391753 138391762 4.0E-06 GTCACGTGAC 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 138391753 138391762 4.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 138391753 138391762 8.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 138391753 138391762 8.0E-06 GTCACGTGAC 10 REST_MA0138.2 JASPAR - 138392061 138392081 6.0E-06 TGGAGTACATTGGACAGCAAA 21 MLX_bHLH_full_dimeric_10_1 SELEX + 138391753 138391762 5.0E-06 GTCACGTGAC 10 MLX_bHLH_full_dimeric_10_1 SELEX - 138391753 138391762 5.0E-06 GTCACGTGAC 10 E2F1_E2F_DBD_dimeric_12_1 SELEX - 138391651 138391662 9.0E-06 TGTGGCGCCCAA 12 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 138391753 138391762 1.0E-06 GTCACGTGAC 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 138391753 138391762 1.0E-06 GTCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 138391753 138391762 2.0E-06 GTCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX - 138391753 138391762 2.0E-06 GTCACGTGAC 10 V_USF_Q6_M00187 TRANSFAC + 138391753 138391762 4.0E-06 GTCACGTGAC 10 V_USF_Q6_M00187 TRANSFAC - 138391753 138391762 4.0E-06 GTCACGTGAC 10 V_YY1_02_M00069 TRANSFAC + 138391688 138391707 9.0E-06 CCTCAGCCATTGTGCCTGGA 20 V_ZFX_01_M01593 TRANSFAC - 138392506 138392521 1.0E-05 GGCCAGGCCGAGCGGC 16 V_ARNT_02_M00539 TRANSFAC + 138391748 138391767 1.0E-06 GCCAGGTCACGTGACTGGGG 20 V_ARNT_02_M00539 TRANSFAC - 138391748 138391767 1.0E-06 CCCCAGTCACGTGACCTGGC 20 V_LMAF_Q2_M01139 TRANSFAC + 138396650 138396658 6.0E-06 GGTCAGCAG 9 V_SP1_Q6_01_M00931 TRANSFAC - 138392401 138392410 4.0E-06 GGGGCGGGGC 10 V_HNF4_Q6_M00967 TRANSFAC - 138392054 138392062 2.0E-06 AAAGTCCAA 9 V_EAR2_Q2_M01728 TRANSFAC - 138388369 138388382 5.0E-06 TTCTCTTTGCACTT 14 V_MAF_Q6_M00648 TRANSFAC - 138391362 138391377 4.0E-06 TACAAGGAAGTGGGGA 16 V_SP1_03_M02281 TRANSFAC + 138392402 138392411 7.0E-06 CCCCGCCCCC 10 V_GKLF_02_M01588 TRANSFAC - 138392309 138392320 8.0E-06 GCCCCGCCCTGC 12 V_REX1_01_M01695 TRANSFAC + 138391690 138391699 7.0E-06 TCAGCCATTG 10 V_SREBP1_01_M00220 TRANSFAC + 138388335 138388345 2.0E-06 CATCACCTGAT 11 V_SREBP1_01_M00220 TRANSFAC + 138391752 138391762 5.0E-06 GGTCACGTGAC 11 V_ARID5A_03_M02736 TRANSFAC - 138392166 138392179 6.0E-06 GTAATATTTAAACG 14 V_ARID5A_03_M02736 TRANSFAC + 138392170 138392183 6.0E-06 TAAATATTACAAAC 14 V_RFX1_01_M00280 TRANSFAC - 138391732 138391748 5.0E-06 CCGTCGCTTGGCAACAG 17 V_OLF1_01_M00261 TRANSFAC + 138391839 138391860 6.0E-06 GGCGACTCCCCAAGGGCCGGGA 22 V_ZF5_B_M00333 TRANSFAC + 138392601 138392613 7.0E-06 TGAGCGCGCGCTT 13 V_AP2BETA_Q3_M01858 TRANSFAC - 138391915 138391930 4.0E-06 GCGGGTGGCTGGGGGC 16 V_EGR1_Q6_M01873 TRANSFAC - 138392404 138392413 4.0E-06 GCGGGGGCGG 10 V_REST_01_M01256 TRANSFAC + 138392057 138392078 2.0E-06 GACTTTTGCTGTCCAATGTACT 22 V_USF_01_M00121 TRANSFAC + 138391751 138391764 4.0E-06 AGGTCACGTGACTG 14 V_USF_01_M00121 TRANSFAC - 138391751 138391764 4.0E-06 CAGTCACGTGACCT 14 V_ERALPHA_01_M01801 TRANSFAC + 138388238 138388252 3.0E-06 AGGTGACTGTGACAT 15 V_ERALPHA_01_M01801 TRANSFAC - 138388238 138388252 2.0E-06 ATGTCACAGTCACCT 15 V_RFX_Q6_M00975 TRANSFAC + 138391732 138391740 4.0E-06 CTGTTGCCA 9 V_HIC1_02_M01072 TRANSFAC + 138392839 138392853 1.0E-06 CCCAGGTGCCCGGGC 15 V_CTCF_02_M01259 TRANSFAC + 138396665 138396684 0.0E+00 CAGCTGCCACTAGAGGGCAC 20 V_CTCF_01_M01200 TRANSFAC + 138396667 138396686 0.0E+00 GCTGCCACTAGAGGGCACCG 20 V_HNF4A_02_M02868 TRANSFAC - 138392051 138392066 0.0E+00 AGCAAAAGTCCAATCG 16 V_SP4_Q5_M01273 TRANSFAC + 138392401 138392411 1.0E-06 GCCCCGCCCCC 11 V_AP3_Q6_M00690 TRANSFAC + 138392110 138392117 5.0E-06 TCTAAATT 8 V_STRA13_01_M00985 TRANSFAC - 138391751 138391764 3.0E-06 CAGTCACGTGACCT 14 V_TFEB_01_M01768 TRANSFAC + 138391753 138391762 3.0E-06 GTCACGTGAC 10 V_TFEB_01_M01768 TRANSFAC - 138391753 138391762 3.0E-06 GTCACGTGAC 10 V_LUN1_01_M00480 TRANSFAC + 138392421 138392437 9.0E-06 TCCCAGCCGCCTGGGGA 17 V_T3R_Q6_M00963 TRANSFAC + 138388306 138388314 7.0E-06 CCTGTCCTT 9 V_TEF1_Q6_03_M01817 TRANSFAC - 138388249 138388257 9.0E-06 CAGGAATGT 9 V_REST_02_M02256 TRANSFAC - 138392061 138392081 6.0E-06 TGGAGTACATTGGACAGCAAA 21 V_CEBPB_Q6_M01896 TRANSFAC + 138392140 138392149 7.0E-06 TTATGAAATT 10 V_EGR1_06_M02744 TRANSFAC + 138392403 138392416 3.0E-06 CCCGCCCCCGCAGG 14 V_SOX14_04_M02901 TRANSFAC + 138392990 138393006 6.0E-06 GAGTTGGGTGGGAACGA 17 V_EFC_Q6_M00626 TRANSFAC - 138391734 138391747 7.0E-06 CGTCGCTTGGCAAC 14 V_PPARG_02_M00515 TRANSFAC + 138388234 138388256 7.0E-06 CATTAGGTGACTGTGACATTCCT 23 V_SP1_Q2_01_M00933 TRANSFAC + 138392402 138392411 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 138392401 138392414 5.0E-06 TGCGGGGGCGGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC - 138392400 138392412 9.0E-06 CGGGGGCGGGGCA 13 V_HOXD10_01_M01375 TRANSFAC - 138392133 138392149 8.0E-06 AATTTCATAAAGTTAGC 17 V_MIF1_01_M00279 TRANSFAC - 138391731 138391748 2.0E-06 CCGTCGCTTGGCAACAGG 18 V_ESR2_01_M02377 TRANSFAC - 138388237 138388254 6.0E-06 GAATGTCACAGTCACCTA 18 V_NF1_Q6_M00193 TRANSFAC + 138388355 138388372 5.0E-06 CCTTGGCAAGAAACAAGT 18 V_ER_Q6_M00191 TRANSFAC + 138388236 138388254 6.0E-06 TTAGGTGACTGTGACATTC 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.