Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NDUFAF6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 137682 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 chr8 + 96032213 - 96037713 96037213 Transcription Factor Binding Sites   Download all TFBS in the NDUFAF6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP3_C2H2_DBD_monomeric_11_1 SELEX - 96037170 96037180 1.0E-05 GCCACGCCCCT 11 SOX10_HMG_full_dimeric_16_1 SELEX - 96036855 96036870 9.0E-06 AACACCTTGCACTGTT 16 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 96037170 96037180 7.0E-06 GCCACGCCCCT 11 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 96032440 96032457 3.0E-06 GTAATTGAGGATAAGTAA 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 96032440 96032457 9.0E-06 TTACTTATCCTCAATTAC 18 SOX8_HMG_DBD_dimeric_16_1 SELEX - 96036855 96036870 9.0E-06 AACACCTTGCACTGTT 16 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 96037208 96037221 8.0E-06 GGGGTCGAAGGGCA 14 ZNF435_C2H2_full_dimeric_18_1 SELEX - 96036864 96036881 3.0E-06 CATGAGAACAGAACACCT 18 TBX20_TBX_DBD_dimeric_19_1 SELEX + 96036907 96036925 4.0E-06 GGGCGTGATTTTGGCAGCT 19 TBX20_TBX_DBD_dimeric_19_1 SELEX - 96036907 96036925 6.0E-06 AGCTGCCAAAATCACGCCC 19 SPIB_ETS_DBD_monomeric_14_1 SELEX - 96032483 96032496 0.0E+00 AAAAAGAGGAACTT 14 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 96032441 96032456 5.0E-06 TAATTGAGGATAAGTA 16 TBX1_TBX_DBD_dimeric_19_1 SELEX + 96036907 96036925 6.0E-06 GGGCGTGATTTTGGCAGCT 19 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 96032441 96032456 7.0E-06 TAATTGAGGATAAGTA 16 EGR2_C2H2_full_monomeric_15_1 SELEX - 96036742 96036756 9.0E-06 AAACGCCCACACACC 15 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX + 96037208 96037222 8.0E-06 GGGGTCGAAGGGCAC 15 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 96032469 96032482 9.0E-06 AGCATGATGCATTC 14 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 96037208 96037221 6.0E-06 GGGGTCGAAGGGCA 14 EGR4_C2H2_DBD_monomeric_16_2 SELEX - 96036741 96036756 5.0E-06 AAACGCCCACACACCA 16 TBX15_TBX_DBD_dimeric_19_1 SELEX + 96036907 96036925 9.0E-06 GGGCGTGATTTTGGCAGCT 19 Foxd3_MA0041.1 JASPAR - 96032428 96032439 5.0E-06 CTTTGTTTTTTT 12 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 96037167 96037181 8.0E-06 GGCCACGCCCCTGCA 15 Stat3_MA0144.1 JASPAR - 96037039 96037048 1.0E-06 TTCCAGGAAA 10 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX + 96037208 96037221 9.0E-06 GGGGTCGAAGGGCA 14 MAFK_bZIP_full_monomeric_12_1 SELEX + 96032628 96032639 8.0E-06 AAACTTGCTGAG 12 SPI1_ETS_full_monomeric_14_1 SELEX - 96032483 96032496 0.0E+00 AAAAAGAGGAACTT 14 ELF5_MA0136.1 JASPAR + 96036925 96036933 4.0E-06 TACTTCCTT 9 Sox2_MA0143.1 JASPAR - 96032426 96032440 3.0E-06 CCTTTGTTTTTTTGA 15 RREB1_MA0073.1 JASPAR - 96036734 96036753 7.0E-06 CGCCCACACACCACCAAAGG 20 RREB1_MA0073.1 JASPAR - 96036742 96036761 3.0E-06 CCACCAAACGCCCACACACC 20 V_FOXP1_01_M00987 TRANSFAC - 96032428 96032447 8.0E-06 TCAATTACCTTTGTTTTTTT 20 V_SPI1_01_M01203 TRANSFAC - 96032480 96032496 0.0E+00 AAAAAGAGGAACTTGAA 17 V_STAT5A_Q6_M01890 TRANSFAC - 96033834 96033846 1.0E-06 TTTTTTCTTAGAA 13 V_TCF3_01_M01594 TRANSFAC - 96032428 96032440 0.0E+00 CCTTTGTTTTTTT 13 V_TBX15_01_M01263 TRANSFAC - 96036907 96036925 4.0E-06 AGCTGCCAAAATCACGCCC 19 V_HSF1_Q6_M01023 TRANSFAC - 96036717 96036733 3.0E-06 CCTCTGGAAATGTCGCC 17 V_BCL6B_03_M02740 TRANSFAC - 96033830 96033845 6.0E-06 TTTTTCTTAGAATGAC 16 V_BCL6B_03_M02740 TRANSFAC + 96033831 96033846 6.0E-06 TCATTCTAAGAAAAAA 16 V_FOXD3_01_M00130 TRANSFAC - 96032428 96032439 5.0E-06 CTTTGTTTTTTT 12 V_STAT_Q6_M00777 TRANSFAC - 96033835 96033847 2.0E-06 TTTTTTTCTTAGA 13 V_EAR2_Q2_M01728 TRANSFAC - 96032430 96032443 4.0E-06 TTACCTTTGTTTTT 14 V_PU1_Q4_M01172 TRANSFAC + 96032477 96032495 0.0E+00 GCATTCAAGTTCCTCTTTT 19 V_HOXC13_01_M01317 TRANSFAC + 96038009 96038024 9.0E-06 TAGCCTCATAAAGTCA 16 V_AR_03_M00956 TRANSFAC + 96036852 96036878 1.0E-06 AGAAACAGTGCAAGGTGTTCTGTTCTC 27 V_STAT4_Q4_M01666 TRANSFAC + 96033834 96033847 1.0E-06 TTCTAAGAAAAAAA 14 V_SOX7_03_M02807 TRANSFAC + 96032426 96032447 3.0E-06 TCAAAAAAACAAAGGTAATTGA 22 V_FOXA2_02_M02853 TRANSFAC + 96032427 96032441 3.0E-06 CAAAAAAACAAAGGT 15 V_GCM1_04_M02862 TRANSFAC + 96036890 96036906 8.0E-06 GGGGTATAGGGGCGGCG 17 V_FKLF_Q5_M01837 TRANSFAC + 96037479 96037488 2.0E-06 GGGGTGGGAG 10 V_TBX18_01_M01262 TRANSFAC + 96036907 96036925 9.0E-06 GGGCGTGATTTTGGCAGCT 19 V_GFI1_01_M00250 TRANSFAC - 96032631 96032654 9.0E-06 AAAGAGCAAATCAGACTCAGCAAG 24 V_HOXB6_01_M01460 TRANSFAC - 96032437 96032452 5.0E-06 TATCCTCAATTACCTT 16 V_SFPI1_04_M02896 TRANSFAC - 96032514 96032527 1.0E-05 GATTTTAAGGAACC 14 V_MUSCLE_INI_B_M00321 TRANSFAC - 96037473 96037493 4.0E-06 AGCCGCTCCCACCCCGGGACC 21 V_SPIB_01_M01204 TRANSFAC - 96032480 96032496 0.0E+00 AAAAAGAGGAACTTGAA 17 V_RREB1_01_M00257 TRANSFAC - 96036737 96036750 8.0E-06 CCACACACCACCAA 14 V_RREB1_01_M00257 TRANSFAC - 96036880 96036893 3.0E-06 CCCCAAATCCACCA 14 V_STAT4_Q5_M02117 TRANSFAC + 96033834 96033843 1.0E-06 TTCTAAGAAA 10 V_STAT4_Q5_M02117 TRANSFAC - 96037039 96037048 7.0E-06 TTCCAGGAAA 10 V_SOX11_03_M02795 TRANSFAC + 96032428 96032444 1.0E-06 AAAAAAACAAAGGTAAT 17 V_NKX23_01_M01457 TRANSFAC + 96038237 96038252 2.0E-06 CTTGAAGTACTTGGTC 16 V_FOXO1_Q5_M01216 TRANSFAC + 96032430 96032438 1.0E-06 AAAAACAAA 9 V_PTF1BETA_Q6_M00657 TRANSFAC + 96037159 96037172 6.0E-06 GGGGAACCTGCAGG 14 V_MTF1_06_M02882 TRANSFAC - 96032490 96032503 6.0E-06 AGCTATGAAAAAGA 14 V_MTF1_06_M02882 TRANSFAC + 96033834 96033847 3.0E-06 TTCTAAGAAAAAAA 14 V_FOXJ3_06_M02855 TRANSFAC - 96038031 96038047 8.0E-06 ACAAACAAAACACTTCA 17 V_NKX3A_02_M01383 TRANSFAC - 96038236 96038252 5.0E-06 GACCAAGTACTTCAAGA 17 V_AIRE_01_M00999 TRANSFAC + 96032430 96032455 7.0E-06 AAAAACAAAGGTAATTGAGGATAAGT 26 V_NRF1_Q6_M00652 TRANSFAC - 96037328 96037337 4.0E-06 CGCATGCGCG 10 V_BARX2_01_M01431 TRANSFAC + 96032437 96032452 1.0E-05 AAGGTAATTGAGGATA 16 V_ZFP281_01_M01597 TRANSFAC + 96036990 96037000 5.0E-06 TGGGGGAAGGG 11 V_SOX2_01_M02246 TRANSFAC - 96032426 96032440 3.0E-06 CCTTTGTTTTTTTGA 15 V_ZFP281_04_M02831 TRANSFAC - 96036988 96037002 9.0E-06 TCCCCTTCCCCCACG 15 V_SRF_06_M02916 TRANSFAC + 96033835 96033851 5.0E-06 TCTAAGAAAAAAACTCA 17 V_SOX4_01_M01308 TRANSFAC + 96032433 96032440 1.0E-05 AACAAAGG 8 V_FOXO1_01_M00473 TRANSFAC + 96032429 96032438 2.0E-06 AAAAAACAAA 10 V_SOX2_Q6_M01272 TRANSFAC - 96032429 96032444 0.0E+00 ATTACCTTTGTTTTTT 16 V_PR_02_M00957 TRANSFAC + 96036852 96036878 4.0E-06 AGAAACAGTGCAAGGTGTTCTGTTCTC 27 V_ELF5_04_M02241 TRANSFAC + 96036925 96036933 4.0E-06 TACTTCCTT 9 V_CMAF_01_M01070 TRANSFAC + 96032628 96032646 3.0E-06 AAACTTGCTGAGTCTGATT 19 V_STAT1_Q6_M01823 TRANSFAC - 96037039 96037048 2.0E-06 TTCCAGGAAA 10 V_DEC_Q1_M00997 TRANSFAC - 96037613 96037625 4.0E-06 ACCCATGTGAATG 13 V_BHLHB2_04_M02845 TRANSFAC + 96036978 96037000 7.0E-06 TGTGGATGCACGTGGGGGAAGGG 23 V_SMAD1_01_M01590 TRANSFAC + 96032430 96032441 1.0E-06 AAAAACAAAGGT 12 V_NANOG_02_M01247 TRANSFAC + 96032426 96032445 0.0E+00 TCAAAAAAACAAAGGTAATT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.