Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RIPPLY2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 134701 ripply2 homolog (zebrafish) chr6 + 84557984 - 84563484 84562984 Transcription Factor Binding Sites   Download all TFBS in the RIPPLY2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 84562977 84562984 5.0E-06 ATAAACAA 8 TBP_MA0108.2 JASPAR + 84563048 84563062 4.0E-06 CTATATAAAGCTCGG 15 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 84564745 84564753 1.0E-05 TAACCACAA 9 RUNX2_RUNX_DBD_dimeric_18_1 SELEX - 84562974 84562991 9.0E-06 TAGCCGCATAAACAAAAA 18 Foxq1_MA0040.1 JASPAR + 84562975 84562985 9.0E-06 TTTTGTTTATG 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 84562974 84562984 3.0E-06 ATAAACAAAAA 11 ALX3_homeodomain_full_dimeric_13_1 SELEX - 84564642 84564654 1.0E-05 TAAATTCCATTAC 13 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 84562974 84562984 2.0E-06 ATAAACAAAAA 11 MZF1_5-13_MA0057.1 JASPAR + 84564710 84564719 1.0E-06 GTAGGGGGAA 10 HOXA13_homeodomain_full_monomeric_11_1 SELEX - 84564664 84564674 3.0E-06 ACTTGTAAAAC 11 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 84562977 84562984 5.0E-06 ATAAACAA 8 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 84562974 84562986 4.0E-06 GCATAAACAAAAA 13 HNF1A_MA0046.1 JASPAR + 84564009 84564022 8.0E-06 GGTTACTTATCTTC 14 V_MEIS1BHOXA9_02_M00421 TRANSFAC - 84564693 84564706 3.0E-06 TGACAGATTTAGGC 14 V_FREAC7_01_M00293 TRANSFAC - 84562974 84562989 8.0E-06 GCCGCATAAACAAAAA 16 V_AML_Q6_M00769 TRANSFAC + 84564741 84564755 3.0E-06 TAAGTTGTGGTTACC 15 V_GATA1_Q6_M02004 TRANSFAC - 84564011 84564025 4.0E-06 TGAGAAGATAAGTAA 15 V_ERR3_Q2_01_M02094 TRANSFAC + 84564003 84564015 3.0E-06 CTTCAAGGTTACT 13 V_LRH1_Q5_01_M02098 TRANSFAC + 84564003 84564013 3.0E-06 CTTCAAGGTTA 11 V_AML3_Q6_M01856 TRANSFAC - 84564745 84564752 1.0E-05 AACCACAA 8 V_MEF2_02_M00231 TRANSFAC - 84563043 84563064 9.0E-06 ACCCGAGCTTTATATAGCCCTC 22 V_SRY_02_M00160 TRANSFAC - 84562973 84562984 3.0E-06 ATAAACAAAAAG 12 V_NFAT3_Q3_M01734 TRANSFAC - 84564609 84564618 6.0E-06 ACTTTTTCCT 10 V_CEBP_01_M00159 TRANSFAC + 84564654 84564666 3.0E-06 AGTTTGGTTAGTT 13 V_FOXO3A_Q1_M01137 TRANSFAC - 84562974 84562985 5.0E-06 CATAAACAAAAA 12 V_FOXJ1_03_M02750 TRANSFAC - 84562972 84562987 3.0E-06 CGCATAAACAAAAAGG 16 V_GATA_C_M00203 TRANSFAC - 84564010 84564020 8.0E-06 AGATAAGTAAC 11 V_COUPTF_Q6_M01036 TRANSFAC - 84564708 84564730 3.0E-06 TTCCCTGACCCTTCCCCCTACCA 23 V_FOXP3_01_M01599 TRANSFAC - 84562977 84562984 5.0E-06 ATAAACAA 8 V_HOXC13_01_M01317 TRANSFAC - 84564662 84564677 7.0E-06 CATACTTGTAAAACTA 16 V_HNF1_Q6_M00790 TRANSFAC + 84564008 84564025 3.0E-06 AGGTTACTTATCTTCTCA 18 V_NFAT_Q6_M00302 TRANSFAC + 84564606 84564617 5.0E-06 CACAGGAAAAAG 12 V_TATA_01_M00252 TRANSFAC + 84563048 84563062 4.0E-06 CTATATAAAGCTCGG 15 V_HIC1_03_M01073 TRANSFAC + 84563086 84563103 6.0E-06 CAAGATTGCCCGCGAGCT 18 V_AML2_01_M01759 TRANSFAC - 84564745 84564752 1.0E-05 AACCACAA 8 V_MAZ_Q6_01_M02023 TRANSFAC - 84563298 84563311 8.0E-06 GTTGGAGGGGAGGA 14 V_HNF3_Q6_M00791 TRANSFAC - 84562972 84562984 7.0E-06 ATAAACAAAAAGG 13 V_ERR1_Q3_M01841 TRANSFAC - 84564002 84564016 8.0E-06 AAGTAACCTTGAAGC 15 V_PEBP_Q6_M00984 TRANSFAC - 84564741 84564755 8.0E-06 GGTAACCACAACTTA 15 V_GRE_C_M00205 TRANSFAC - 84564601 84564616 1.0E-05 TTTTTCCTGTGTCCTT 16 V_MEF2_Q6_01_M00941 TRANSFAC + 84563046 84563057 6.0E-06 GGCTATATAAAG 12 V_MZF1_02_M00084 TRANSFAC + 84564707 84564719 2.0E-06 GTGGTAGGGGGAA 13 V_FOXO1_Q5_M01216 TRANSFAC - 84562976 84562984 2.0E-06 ATAAACAAA 9 V_SF1_Q6_01_M01132 TRANSFAC - 84564005 84564013 9.0E-06 TAACCTTGA 9 V_FREAC2_01_M00290 TRANSFAC - 84562974 84562989 1.0E-05 GCCGCATAAACAAAAA 16 V_HFH8_01_M00294 TRANSFAC + 84562975 84562987 4.0E-06 TTTTGTTTATGCG 13 V_NKX3A_02_M01383 TRANSFAC + 84564685 84564701 8.0E-06 CACGAAGTGCCTAAATC 17 V_ZBTB4_04_M02929 TRANSFAC - 84564698 84564713 6.0E-06 CTACCACTGACAGATT 16 V_TBX15_02_M01264 TRANSFAC - 84562923 84562940 1.0E-06 GGGTGTGAACGCGTGCAA 18 V_MTATA_B_M00320 TRANSFAC + 84563048 84563064 1.0E-06 CTATATAAAGCTCGGGT 17 V_FOXO1_01_M00473 TRANSFAC - 84562976 84562985 1.0E-06 CATAAACAAA 10 V_MEF2A_05_M01301 TRANSFAC + 84563046 84563057 5.0E-06 GGCTATATAAAG 12 V_FOXO4_01_M00472 TRANSFAC - 84562974 84562984 4.0E-06 ATAAACAAAAA 11 V_HNF1A_01_M02162 TRANSFAC + 84564009 84564022 8.0E-06 GGTTACTTATCTTC 14 V_PBX1_04_M01357 TRANSFAC + 84564023 84564039 2.0E-06 TCACTCATCAAATTGAA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.