Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

COX7A2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1347 cytochrome c oxidase subunit VIIa polypeptide 2 (liver) chr6 - 75953144 - 75958644 75953644 Transcription Factor Binding Sites   Download all TFBS in the COX7A2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Foxa2_MA0047.2 JASPAR + 75956299 75956310 2.0E-06 TGTTTACTCATG 12 SOX4_HMG_DBD_dimeric_16_1 SELEX - 75954230 75954245 8.0E-06 AAATAATTGCTGTGCT 16 POU2F1_POU_DBD_dimeric_14_1 SELEX + 75956412 75956425 1.0E-06 TATAAAAATTCAAA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 75956412 75956425 8.0E-06 TTTGAATTTTTATA 14 HOXC13_homeodomain_DBD_monomeric_11_1 SELEX + 75953901 75953911 3.0E-06 CCTCATAAAAT 11 FOXA1_MA0148.1 JASPAR + 75956299 75956309 2.0E-06 TGTTTACTCAT 11 RARA_nuclearreceptor_full_dimeric_18_1 SELEX + 75953276 75953293 7.0E-06 GAAGGGAAAGTAAGGTCA 18 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX + 75953277 75953293 8.0E-06 AAGGGAAAGTAAGGTCA 17 HOXD13_homeodomain_DBD_monomeric_11_1 SELEX + 75953901 75953911 3.0E-06 CCTCATAAAAT 11 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 75953277 75953293 1.0E-06 AAGGGAAAGTAAGGTCA 17 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX + 75953276 75953293 3.0E-06 GAAGGGAAAGTAAGGTCA 18 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX + 75953735 75953746 4.0E-06 CAAACGATTTAT 12 Sox1_HMG_DBD_dimeric_13_1 SELEX + 75953020 75953032 1.0E-06 TCAAAACCATTGA 13 ZNF238_C2H2_full_monomeric_13_1 SELEX - 75956424 75956436 1.0E-06 AAGACAGATGTTT 13 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 75954293 75954308 9.0E-06 TAAACACTTGTAATGG 16 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX + 75953902 75953911 9.0E-06 CTCATAAAAT 10 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 75954303 75954313 4.0E-06 AGAAATAAACA 11 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 75953902 75953911 6.0E-06 CTCATAAAAT 10 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 75956412 75956425 2.0E-06 TATAAAAATTCAAA 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 75956412 75956425 4.0E-06 TTTGAATTTTTATA 14 POU2F3_POU_DBD_dimeric_12_1 SELEX + 75956413 75956424 3.0E-06 ATAAAAATTCAA 12 FOXI1_MA0042.1 JASPAR + 75954300 75954311 5.0E-06 AAGTGTTTATTT 12 MYBL1_MYB_DBD_dimeric_17_1 SELEX - 75953470 75953486 6.0E-06 TTCAGTTGTGGCGGTTG 17 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 75954303 75954313 8.0E-06 AGAAATAAACA 11 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 75953277 75953293 4.0E-06 AAGGGAAAGTAAGGTCA 17 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 75956331 75956345 3.0E-06 GTAATTGGCACATAG 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 75956332 75956344 5.0E-06 TATGTGCCAATTA 13 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 75953274 75953288 3.0E-06 CGGAAGGGAAAGTAA 15 HOXB13_homeodomain_DBD_monomeric_11_1 SELEX + 75953901 75953911 2.0E-06 CCTCATAAAAT 11 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 75956413 75956424 4.0E-06 ATAAAAATTCAA 12 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 75953820 75953835 9.0E-06 GCGAGAAGGCGTAAAA 16 HOXA13_homeodomain_full_monomeric_11_1 SELEX + 75953901 75953911 8.0E-06 CCTCATAAAAT 11 SOX21_HMG_DBD_dimeric_16_1 SELEX - 75956352 75956367 9.0E-06 ACCAATGTATATTGAG 16 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX + 75953902 75953911 6.0E-06 CTCATAAAAT 10 ELF3_ETS_DBD_monomeric_12_1 SELEX - 75953076 75953087 8.0E-06 CACCCGGAAGCA 12 SRY_HMG_DBD_dimeric_13_1 SELEX + 75953020 75953032 1.0E-06 TCAAAACCATTGA 13 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX + 75953902 75953910 1.0E-05 CTCATAAAA 9 ETV6_ETS_full_dimeric_15_1 SELEX + 75953510 75953524 0.0E+00 CCGGAACCGGAACTA 15 POU3F3_POU_DBD_dimeric_12_1 SELEX + 75956413 75956424 7.0E-06 ATAAAAATTCAA 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 75954033 75954045 7.0E-06 AAGAATATAAAAA 13 V_HOXA9_01_M01351 TRANSFAC + 75953899 75953915 7.0E-06 AGCCTCATAAAATTCAA 17 V_AP1_Q2_M00173 TRANSFAC + 75953167 75953177 2.0E-06 GGTGACTAAGA 11 V_FREAC7_01_M00293 TRANSFAC - 75954299 75954314 5.0E-06 AAGAAATAAACACTTG 16 V_ELK1_04_M01165 TRANSFAC + 75953514 75953524 9.0E-06 AACCGGAACTA 11 V_ZFP187_03_M02830 TRANSFAC - 75956332 75956345 1.0E-06 CTATGTGCCAATTA 14 V_TCF3_01_M01594 TRANSFAC - 75953602 75953614 6.0E-06 TTTTTCTTTTGCT 13 V_TCF3_01_M01594 TRANSFAC - 75953906 75953918 4.0E-06 TTTTTGAATTTTA 13 V_TCF3_01_M01594 TRANSFAC - 75956415 75956427 7.0E-06 GTTTTGAATTTTT 13 V_TCFE2A_04_M02927 TRANSFAC - 75956421 75956437 0.0E+00 TAAGACAGATGTTTTGA 17 V_XFD1_01_M00267 TRANSFAC - 75956295 75956308 6.0E-06 TGAGTAAACACAAC 14 TAL1_TCF3_MA0091.1 JASPAR + 75956423 75956434 1.0E-05 AAAACATCTGTC 12 V_NRSF_Q4_M01028 TRANSFAC + 75953981 75953999 9.0E-06 TTACTGTTCCTTGTGTTGA 19 V_HMGIY_Q3_M01010 TRANSFAC - 75953903 75953917 3.0E-06 TTTTGAATTTTATGA 15 V_HMGIY_Q3_M01010 TRANSFAC + 75954233 75954247 8.0E-06 ACAGCAATTATTTGT 15 V_HMGIY_Q3_M01010 TRANSFAC - 75956412 75956426 3.0E-06 TTTTGAATTTTTATA 15 V_ERR3_Q2_01_M02094 TRANSFAC + 75953309 75953321 5.0E-06 AATCAAGGTGACT 13 V_GATA3_03_M00351 TRANSFAC - 75953555 75953564 8.0E-06 AAAGATTTAA 10 V_STAT_Q6_M00777 TRANSFAC - 75953050 75953062 8.0E-06 TGTTTTTCTGGTA 13 V_STAT_Q6_M00777 TRANSFAC + 75954305 75954317 7.0E-06 TTTATTTCTTGTA 13 V_TCF4_Q5_01_M02033 TRANSFAC + 75953793 75953802 2.0E-06 ATCAAAGAAA 10 V_NR2F2_03_M02783 TRANSFAC - 75953677 75953692 4.0E-06 TCGAAAAGGTCAGGAA 16 V_IRF2_Q6_M01882 TRANSFAC + 75953273 75953288 3.0E-06 ACGGAAGGGAAAGTAA 16 V_RP58_01_M00532 TRANSFAC + 75956423 75956434 2.0E-06 AAAACATCTGTC 12 V_CEBP_Q2_M00190 TRANSFAC + 75954275 75954288 4.0E-06 ATTTTGCTTAAGTA 14 V_HNF3_Q6_01_M01012 TRANSFAC + 75956294 75956311 8.0E-06 GGTTGTGTTTACTCATGT 18 V_FOXJ1_03_M02750 TRANSFAC - 75956293 75956308 8.0E-06 TGAGTAAACACAACCG 16 V_HOXA2_01_M01402 TRANSFAC + 75956328 75956343 6.0E-06 ATAGTAATTGGCACAT 16 V_HFH4_01_M00742 TRANSFAC - 75953731 75953743 5.0E-06 AATCGTTTGCTTT 13 V_NKX61_03_M01489 TRANSFAC - 75954232 75954248 5.0E-06 AACAAATAATTGCTGTG 17 V_HOXD13_01_M01404 TRANSFAC + 75953899 75953914 6.0E-06 AGCCTCATAAAATTCA 16 V_HOXA13_03_M01430 TRANSFAC + 75953898 75953913 1.0E-06 AAGCCTCATAAAATTC 16 V_LDSPOLYA_B_M00317 TRANSFAC + 75956295 75956310 7.0E-06 GTTGTGTTTACTCATG 16 V_HOXC13_01_M01317 TRANSFAC + 75953898 75953913 1.0E-06 AAGCCTCATAAAATTC 16 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 75953128 75953142 7.0E-06 TGAGGTTAGTAGCTC 15 V_HNF6_Q6_M00639 TRANSFAC + 75953770 75953781 9.0E-06 TGAAGTCAATGT 12 V_ELF4_04_M02850 TRANSFAC + 75953910 75953926 4.0E-06 ATTCAAAAAAGAATTAC 17 V_ZFP105_03_M02827 TRANSFAC + 75953911 75953925 7.0E-06 TTCAAAAAAGAATTA 15 V_HOXB13_01_M01467 TRANSFAC + 75953899 75953914 2.0E-06 AGCCTCATAAAATTCA 16 V_ZFP410_03_M02832 TRANSFAC + 75954148 75954164 0.0E+00 AGAAATGGGATGGCGAA 17 V_CART1_01_M00416 TRANSFAC + 75954284 75954301 4.0E-06 AAGTAATCCCCATTACAA 18 V_SOX8_04_M02912 TRANSFAC + 75954208 75954221 7.0E-06 ACATTCATTACTGG 14 V_MRF2_01_M00454 TRANSFAC + 75956349 75956362 7.0E-06 ATGCTCAATATACA 14 V_HOXB9_01_M01426 TRANSFAC + 75953899 75953914 6.0E-06 AGCCTCATAAAATTCA 16 V_AP1_Q4_M00188 TRANSFAC + 75953167 75953177 2.0E-06 GGTGACTAAGA 11 V_ARID3A_02_M02839 TRANSFAC - 75954031 75954045 7.0E-06 AAGAATATAAAAACT 15 V_IRF3_Q3_M01279 TRANSFAC - 75953276 75953288 2.0E-06 TTACTTTCCCTTC 13 V_HNF3A_01_M01261 TRANSFAC - 75956298 75956307 8.0E-06 GAGTAAACAC 10 V_HNF3_Q6_M00791 TRANSFAC - 75956297 75956309 6.0E-06 ATGAGTAAACACA 13 V_IRF_Q6_M00772 TRANSFAC - 75953275 75953289 4.0E-06 CTTACTTTCCCTTCC 15 V_GSH2_01_M01326 TRANSFAC + 75956328 75956343 7.0E-06 ATAGTAATTGGCACAT 16 V_OBOX2_01_M01364 TRANSFAC - 75954282 75954298 8.0E-06 TAATGGGGATTACTTAA 17 V_NKX22_02_M01372 TRANSFAC - 75954293 75954309 5.0E-06 ATAAACACTTGTAATGG 17 V_NKX52_01_M01315 TRANSFAC + 75954232 75954248 8.0E-06 CACAGCAATTATTTGTT 17 V_ISRE_01_M00258 TRANSFAC - 75953603 75953617 9.0E-06 TAGTTTTTCTTTTGC 15 V_YY1_Q6_02_M01035 TRANSFAC - 75953498 75953508 5.0E-06 GTGGCCATTTT 11 V_OCT1_04_M00138 TRANSFAC + 75956411 75956433 2.0E-06 GTATAAAAATTCAAAACATCTGT 23 V_HMX1_02_M01481 TRANSFAC + 75954232 75954248 4.0E-06 CACAGCAATTATTTGTT 17 V_SPIB_01_M01204 TRANSFAC + 75953511 75953527 9.0E-06 CGGAACCGGAACTACCT 17 V_NR1B1_Q6_M02110 TRANSFAC - 75953679 75953688 9.0E-06 AAAGGTCAGG 10 V_NKX63_01_M01470 TRANSFAC - 75954232 75954248 4.0E-06 AACAAATAATTGCTGTG 17 V_BLIMP1_Q6_M01066 TRANSFAC + 75953273 75953288 0.0E+00 ACGGAAGGGAAAGTAA 16 V_TAL1BETAITF2_01_M00070 TRANSFAC - 75956422 75956437 7.0E-06 TAAGACAGATGTTTTG 16 V_HFH8_01_M00294 TRANSFAC + 75954300 75954312 4.0E-06 AAGTGTTTATTTC 13 V_HOXB7_01_M01396 TRANSFAC - 75954206 75954221 9.0E-06 CCAGTAATGAATGTAG 16 V_MTF1_06_M02882 TRANSFAC + 75953908 75953921 9.0E-06 AAATTCAAAAAAGA 14 V_OBOX2_02_M03064 TRANSFAC - 75954282 75954298 8.0E-06 TAATGGGGATTACTTAA 17 V_HOXB8_01_M01451 TRANSFAC + 75954232 75954247 9.0E-06 CACAGCAATTATTTGT 16 V_AP1FJ_Q2_M00172 TRANSFAC + 75953167 75953177 3.0E-06 GGTGACTAAGA 11 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 75956422 75956437 5.0E-06 TAAGACAGATGTTTTG 16 V_MSX2_01_M01393 TRANSFAC + 75954231 75954247 6.0E-06 GCACAGCAATTATTTGT 17 V_FOXA2_03_M02260 TRANSFAC + 75956299 75956310 2.0E-06 TGTTTACTCATG 12 V_BARX2_01_M01431 TRANSFAC + 75954233 75954248 5.0E-06 ACAGCAATTATTTGTT 16 V_T3RBETA_Q6_01_M02119 TRANSFAC + 75953278 75953294 2.0E-06 AGGGAAAGTAAGGTCAG 17 V_SIX4_01_M01374 TRANSFAC - 75954260 75954276 2.0E-06 ATGGATGACACCGACAG 17 V_HSF_Q6_M00641 TRANSFAC - 75953848 75953860 1.0E-06 TTCTAGCGGCTTC 13 V_RARA_03_M02787 TRANSFAC - 75953677 75953692 6.0E-06 TCGAAAAGGTCAGGAA 16 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 75953130 75953144 1.0E-06 GATGAGGTTAGTAGC 15 V_SOX14_04_M02901 TRANSFAC - 75952960 75952976 5.0E-06 ATTTTGGGTGGAACTTT 17 V_NUR77_Q5_M01217 TRANSFAC + 75953680 75953689 9.0E-06 CTGACCTTTT 10 V_FOXJ2_01_M00422 TRANSFAC - 75954298 75954315 2.0E-06 CAAGAAATAAACACTTGT 18 V_SOX18_04_M02905 TRANSFAC + 75954203 75954218 7.0E-06 GCACTACATTCATTAC 16 V_SOX1_03_M02802 TRANSFAC - 75952971 75952986 7.0E-06 AAGCCATTCAATTTTG 16 V_SOX1_03_M02802 TRANSFAC + 75953905 75953920 2.0E-06 ATAAAATTCAAAAAAG 16 V_SOX1_03_M02802 TRANSFAC + 75956414 75956429 1.0E-06 TAAAAATTCAAAACAT 16 V_FOXO1_01_M00473 TRANSFAC - 75954301 75954310 9.0E-06 AATAAACACT 10 V_PIT1_Q6_M00802 TRANSFAC - 75953907 75953924 5.0E-06 AATTCTTTTTTGAATTTT 18 V_PAX1_B_M00326 TRANSFAC - 75953236 75953253 9.0E-06 CCGTTACTGGGTAGATGT 18 V_FREAC4_01_M00292 TRANSFAC - 75956295 75956310 1.0E-06 CATGAGTAAACACAAC 16 V_HOXA10_01_M01464 TRANSFAC + 75953899 75953914 8.0E-06 AGCCTCATAAAATTCA 16 V_HMX3_02_M01413 TRANSFAC + 75954232 75954248 9.0E-06 CACAGCAATTATTTGTT 17 V_BARX1_01_M01340 TRANSFAC + 75954233 75954248 4.0E-06 ACAGCAATTATTTGTT 16 V_BARX1_01_M01340 TRANSFAC + 75956328 75956343 1.0E-06 ATAGTAATTGGCACAT 16 V_HOXD10_01_M01375 TRANSFAC + 75953899 75953915 3.0E-06 AGCCTCATAAAATTCAA 17 V_TCF11MAFG_01_M00284 TRANSFAC - 75956293 75956314 7.0E-06 GATACATGAGTAAACACAACCG 22 V_ELK1_03_M01163 TRANSFAC + 75953514 75953524 4.0E-06 AACCGGAACTA 11 V_OBOX5_01_M01381 TRANSFAC - 75954281 75954297 1.0E-05 AATGGGGATTACTTAAG 17 V_ATATA_B_M00311 TRANSFAC - 75954280 75954289 9.0E-06 TTACTTAAGC 10 V_OTX1_01_M01366 TRANSFAC - 75954281 75954297 4.0E-06 AATGGGGATTACTTAAG 17 V_OBOX6_06_M03067 TRANSFAC + 75954281 75954297 1.0E-05 CTTAAGTAATCCCCATT 17 V_HOXB5_01_M01319 TRANSFAC + 75956328 75956343 3.0E-06 ATAGTAATTGGCACAT 16 V_SMAD1_01_M01590 TRANSFAC + 75956392 75956403 8.0E-06 CAAAAGAATGGA 12 V_HOX13_02_M01452 TRANSFAC + 75956328 75956343 7.0E-06 ATAGTAATTGGCACAT 16 V_OCT4_01_M01125 TRANSFAC + 75956412 75956426 1.0E-05 TATAAAAATTCAAAA 15 V_OTX3_01_M01403 TRANSFAC - 75954282 75954298 8.0E-06 TAATGGGGATTACTTAA 17 V_IPF1_06_M01438 TRANSFAC + 75956328 75956343 1.0E-06 ATAGTAATTGGCACAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.