Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PDCL2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 132954 chr4 + 56453379 - 56463379 0 Transcription Factor Binding Sites   Download all TFBS in the PDCL2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints ESRRA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 56454603 56454621 9.0E-06 AGAGGGGGCTTTAAGGTCA 19 FOXL1_forkhead_full_dimeric_13_1 SELEX - 56454500 56454512 7.0E-06 TTTACATAAACAG 13 GATA5_GATA_DBD_monomeric_8_1 SELEX - 56454590 56454597 7.0E-06 AGATAAGA 8 GATA4_GATA_DBD_monomeric_8_1 SELEX - 56454590 56454597 7.0E-06 AGATAAGA 8 IRF7_IRF_DBD_trimeric_17_1 SELEX + 56454400 56454416 5.0E-06 AAAAGGAAATTCCTTGT 17 ESRRG_nuclearreceptor_full_dimeric_18_1 SELEX - 56454603 56454620 5.0E-06 GAGGGGGCTTTAAGGTCA 18 Foxq1_MA0040.1 JASPAR + 56454498 56454508 6.0E-06 TACTGTTTATG 11 GATA3_GATA_full_monomeric_8_1 SELEX - 56454590 56454597 7.0E-06 AGATAAGA 8 POU3F1_POU_DBD_monomeric_12_1 SELEX + 56454504 56454515 9.0E-06 TTATGTAAAAGT 12 ELF5_MA0136.1 JASPAR - 56454402 56454410 5.0E-06 AATTTCCTT 9 V_FREAC7_01_M00293 TRANSFAC - 56454497 56454512 1.0E-06 TTTACATAAACAGTAG 16 V_MAFK_03_M02776 TRANSFAC + 56454509 56454523 3.0E-06 TAAAAGTGCAGACTC 15 V_GATA2_02_M00348 TRANSFAC - 56454590 56454599 8.0E-06 GTAGATAAGA 10 V_SMAD3_Q6_01_M01888 TRANSFAC + 56454424 56454436 1.0E-06 GGACAGACAGAAC 13 V_IRF_Q6_01_M00972 TRANSFAC + 56454432 56454442 6.0E-06 AGAACTGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC + 56454430 56454445 5.0E-06 ACAGAACTGAAAGTCA 16 V_OCT1_01_M00135 TRANSFAC + 56454500 56454518 9.0E-06 CTGTTTATGTAAAAGTGCA 19 V_PPAR_DR1_Q2_M00763 TRANSFAC - 56454416 56454428 7.0E-06 TGTCCTTTGTCCA 13 V_CETS1P54_02_M00074 TRANSFAC + 56454399 56454411 4.0E-06 CAAAAGGAAATTC 13 V_DBP_Q6_01_M01872 TRANSFAC + 56454504 56454511 5.0E-06 TTATGTAA 8 V_GFI1_01_M00250 TRANSFAC + 56454640 56454663 1.0E-06 CTAGACCAAATCAATGTACATCTT 24 V_HNF4_01_B_M00411 TRANSFAC + 56454415 56454429 7.0E-06 GTGGACAAAGGACAG 15 V_SOX7_04_M02911 TRANSFAC - 56454378 56454399 4.0E-06 GGGCAAATTGTGAGGGAGGTGT 22 V_ELF5_01_M01197 TRANSFAC + 56454400 56454410 1.0E-06 AAAAGGAAATT 11 V_DAX1_01_M01248 TRANSFAC - 56454597 56454616 9.0E-06 GGGCTTTAAGGTCAGAAGTA 20 V_HFH1_01_M00129 TRANSFAC + 56454498 56454509 1.0E-06 TACTGTTTATGT 12 V_HNF4_DR1_Q3_M00764 TRANSFAC - 56454416 56454428 5.0E-06 TGTCCTTTGTCCA 13 V_HFH8_01_M00294 TRANSFAC + 56454498 56454510 9.0E-06 TACTGTTTATGTA 13 V_DR1_Q3_M00762 TRANSFAC + 56454416 56454428 2.0E-06 TGGACAAAGGACA 13 V_SIRT6_01_M01797 TRANSFAC - 56454590 56454597 7.0E-06 AGATAAGA 8 V_FOXJ2_01_M00422 TRANSFAC - 56454496 56454513 2.0E-06 TTTTACATAAACAGTAGA 18 V_ELF5_04_M02241 TRANSFAC - 56454402 56454410 5.0E-06 AATTTCCTT 9 V_TCF11MAFG_01_M00284 TRANSFAC - 56454509 56454530 7.0E-06 GCTCAGTGAGTCTGCACTTTTA 22

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.