Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

COX4I1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1327 cytochrome c oxidase subunit IV isoform 1 chr16 + 85828172 - 85833672 85833172 Transcription Factor Binding Sites   Download all TFBS in the COX4I1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 85833849 85833856 5.0E-06 ATAAACAA 8 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX - 85833189 85833200 5.0E-06 CGTCGTAAAATG 12 FOXA1_MA0148.1 JASPAR + 85833780 85833790 9.0E-06 TGTTTGCTCAC 11 FOXA1_MA0148.1 JASPAR + 85833850 85833860 8.0E-06 TGTTTATTCTG 11 FOXL1_forkhead_full_dimeric_13_1 SELEX - 85833845 85833857 7.0E-06 AATAAACAAGCAT 13 Esrrb_MA0141.1 JASPAR - 85833612 85833623 6.0E-06 GCTCCAAGGTCA 12 SOX9_HMG_DBD_monomeric_9_1 SELEX - 85833776 85833784 4.0E-06 AAACAATAG 9 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX - 85833190 85833199 1.0E-06 GTCGTAAAAT 10 XBP1_bZIP_DBD_dimeric_12_1 SELEX - 85833836 85833847 9.0E-06 CATGACGTCAGG 12 HOXC11_homeodomain_full_monomeric_11_1 SELEX - 85833190 85833200 4.0E-06 CGTCGTAAAAT 11 NFKB2_NFAT_DBD_dimeric_13_1 SELEX + 85833869 85833881 8.0E-06 AGGGTATTTCCCC 13 JDP2_bZIP_full_dimeric_12_1 SELEX + 85833836 85833847 9.0E-06 CCTGACGTCATG 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 85833836 85833847 8.0E-06 CATGACGTCAGG 12 EOMES_TBX_DBD_monomeric_13_1 SELEX + 85832273 85832285 7.0E-06 AAGGTGCGAAGAA 13 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 85833190 85833199 2.0E-06 GTCGTAAAAT 10 ESRRG_nuclearreceptor_full_dimeric_18_1 SELEX - 85833612 85833629 8.0E-06 GCGGGCGCTCCAAGGTCA 18 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 85833846 85833856 7.0E-06 ATAAACAAGCA 11 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 85833875 85833886 3.0E-06 TTTCCCCACATC 12 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX - 85833190 85833200 4.0E-06 CGTCGTAAAAT 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 85833846 85833856 1.0E-05 ATAAACAAGCA 11 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX - 85833189 85833200 6.0E-06 CGTCGTAAAATG 12 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 85833190 85833199 1.0E-06 GTCGTAAAAT 10 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 85833875 85833885 2.0E-06 TTTCCCCACAT 11 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX - 85833191 85833199 2.0E-06 GTCGTAAAA 9 HOXD12_homeodomain_DBD_monomeric_11_1 SELEX - 85833190 85833200 4.0E-06 CGTCGTAAAAT 11 SOX9_MA0077.1 JASPAR - 85833776 85833784 7.0E-06 AAACAATAG 9 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 85833875 85833888 2.0E-06 TTTCCCCACATCAC 14 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 85833849 85833856 5.0E-06 ATAAACAA 8 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 85833875 85833886 2.0E-06 TTTCCCCACATC 12 HOXC12_homeodomain_DBD_monomeric_11_1 SELEX - 85833190 85833200 4.0E-06 CGTCGTAAAAT 11 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 85833846 85833858 5.0E-06 GAATAAACAAGCA 13 Zfx_MA0146.1 JASPAR + 85832937 85832950 2.0E-06 GCGGCTGAGGCCTG 14 V_ER_Q6_02_M00959 TRANSFAC - 85833227 85833237 8.0E-06 GAGGTCACCGT 11 V_NFKB_Q6_01_M00774 TRANSFAC - 85833869 85833884 1.0E-05 TGTGGGGAAATACCCT 16 V_E2F4_04_M02847 TRANSFAC - 85832839 85832855 4.0E-06 TGCACGGCGCCAAGTAC 17 V_EBF_Q6_M00977 TRANSFAC - 85832341 85832351 8.0E-06 TTCCCTTGAGG 11 V_AHR_Q5_M00778 TRANSFAC - 85833785 85833795 1.0E-06 CTTGCGTGAGC 11 V_ATF_01_M00017 TRANSFAC + 85833835 85833848 1.0E-05 CCCTGACGTCATGC 14 V_GATA1_Q6_M02004 TRANSFAC + 85832247 85832261 9.0E-06 TTGCCAGATAAGGAA 15 V_YY1_02_M00069 TRANSFAC + 85833413 85833432 9.0E-06 CGGGAGCCATCAAGTCTGCA 20 V_ZFX_01_M01593 TRANSFAC - 85832938 85832953 1.0E-06 GTCCAGGCCTCAGCCG 16 V_ZFX_01_M01593 TRANSFAC + 85833387 85833402 5.0E-06 CGCCAGGCCGGGCCGG 16 V_LRH1_Q5_01_M02098 TRANSFAC - 85833612 85833622 7.0E-06 CTCCAAGGTCA 11 V_CREB_Q4_M00178 TRANSFAC + 85833836 85833847 7.0E-06 CCTGACGTCATG 12 V_CREB_Q4_01_M00917 TRANSFAC + 85833835 85833845 6.0E-06 CCCTGACGTCA 11 V_SRY_02_M00160 TRANSFAC - 85833775 85833786 6.0E-06 GCAAACAATAGG 12 V_GLI1_Q2_M01042 TRANSFAC - 85832875 85832884 3.0E-06 GACCACCCAG 10 V_GLI1_01_M01702 TRANSFAC - 85832874 85832884 2.0E-06 GACCACCCAGG 11 V_ATF3_Q6_01_M01863 TRANSFAC - 85833836 85833846 4.0E-06 ATGACGTCAGG 11 V_HNF3_Q6_01_M01012 TRANSFAC + 85833775 85833792 5.0E-06 CCTATTGTTTGCTCACGC 18 V_HNF3_Q6_01_M01012 TRANSFAC + 85833845 85833862 5.0E-06 ATGCTTGTTTATTCTGCC 18 V_GABPA_04_M02858 TRANSFAC + 85833213 85833228 6.0E-06 CCCTTTTCCGCTCCAC 16 V_FOXJ1_03_M02750 TRANSFAC - 85833844 85833859 4.0E-06 AGAATAAACAAGCATG 16 V_GATA_C_M00203 TRANSFAC + 85832252 85832262 1.0E-06 AGATAAGGAAT 11 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC + 85832737 85832752 4.0E-06 CACGAAGAGGGTGTGG 16 V_ATF4_Q2_M00514 TRANSFAC + 85833836 85833847 1.0E-06 CCTGACGTCATG 12 V_ATF4_Q2_M00514 TRANSFAC - 85833836 85833847 6.0E-06 CATGACGTCAGG 12 V_FOXP3_01_M01599 TRANSFAC - 85833849 85833856 5.0E-06 ATAAACAA 8 V_TST1_01_M00133 TRANSFAC - 85832330 85832344 8.0E-06 GAGGATTTCGAGTTG 15 V_GLI3_02_M01704 TRANSFAC - 85832874 85832884 2.0E-06 GACCACCCAGG 11 V_ZIC3_01_M00450 TRANSFAC + 85832876 85832884 6.0E-06 TGGGTGGTC 9 V_OLF1_01_M00261 TRANSFAC - 85832335 85832356 9.0E-06 AGAGTTTCCCTTGAGGATTTCG 22 V_HOXD12_01_M01380 TRANSFAC - 85833187 85833203 2.0E-06 GAACGTCGTAAAATGCC 17 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 85833850 85833860 7.0E-06 TGTTTATTCTG 11 V_E2F2_04_M02846 TRANSFAC - 85832839 85832855 9.0E-06 TGCACGGCGCCAAGTAC 17 V_IRC900814_04_M02870 TRANSFAC - 85833191 85833206 6.0E-06 TGCGAACGTCGTAAAA 16 V_HOXC11_01_M01329 TRANSFAC - 85833188 85833203 2.0E-06 GAACGTCGTAAAATGC 16 V_HNF1_Q6_01_M01011 TRANSFAC + 85832075 85832095 5.0E-06 AGTTGTTAACCATTAACGGGA 21 V_SZF11_01_M01109 TRANSFAC + 85832670 85832684 8.0E-06 CCAGGGTGAGAGCCA 15 V_HOXD11_01_M01434 TRANSFAC - 85833187 85833203 3.0E-06 GAACGTCGTAAAATGCC 17 V_REST_01_M01256 TRANSFAC - 85833800 85833821 6.0E-06 TCTAGCTTCTCTCCTTGGGCCT 22 V_ERR1_Q3_M01841 TRANSFAC + 85833609 85833623 6.0E-06 CACTGACCTTGGAGC 15 V_HOXC12_01_M01437 TRANSFAC - 85833187 85833203 2.0E-06 GAACGTCGTAAAATGCC 17 V_DAX1_01_M01248 TRANSFAC - 85833606 85833625 8.0E-06 GCGCTCCAAGGTCAGTGCCC 20 V_XFD2_01_M00268 TRANSFAC - 85833846 85833859 2.0E-06 AGAATAAACAAGCA 14 V_ZIC1_01_M00448 TRANSFAC + 85832876 85832884 6.0E-06 TGGGTGGTC 9 V_ATF3_Q6_M00513 TRANSFAC + 85833835 85833848 1.0E-06 CCCTGACGTCATGC 14 V_HOXA11_01_M01378 TRANSFAC - 85833188 85833203 2.0E-06 GAACGTCGTAAAATGC 16 V_CREB_Q2_01_M00916 TRANSFAC - 85833834 85833847 9.0E-06 CATGACGTCAGGGC 14 V_SP3_Q3_M00665 TRANSFAC + 85832575 85832588 4.0E-06 AGCCTGCTGGAGGG 14 V_SF1_Q6_01_M01132 TRANSFAC + 85833612 85833620 7.0E-06 TGACCTTGG 9 V_GLI3_01_M01596 TRANSFAC + 85832875 85832885 4.0E-06 CTGGGTGGTCA 11 V_FREAC2_01_M00290 TRANSFAC - 85833846 85833861 8.0E-06 GCAGAATAAACAAGCA 16 V_LRH1_Q5_M01142 TRANSFAC + 85833611 85833622 6.0E-06 CTGACCTTGGAG 12 V_ATF1_Q6_M00691 TRANSFAC + 85833835 85833845 1.0E-06 CCCTGACGTCA 11 V_GLI2_01_M01703 TRANSFAC - 85832874 85832884 2.0E-06 GACCACCCAGG 11 V_GABPBETA_Q3_M01876 TRANSFAC - 85833300 85833310 1.0E-05 ACCGGAAGAGA 11 V_TAL1_01_M01591 TRANSFAC - 85832250 85832262 1.0E-05 ATTCCTTATCTGG 13 V_TAL1_01_M01591 TRANSFAC - 85833808 85833820 9.0E-06 CTAGCTTCTCTCC 13 V_CNOT3_01_M01253 TRANSFAC - 85833286 85833295 4.0E-06 GGCCGCGCCG 10 V_ATF2_Q5_M01862 TRANSFAC + 85833835 85833846 2.0E-06 CCCTGACGTCAT 12 V_ATF2_Q5_M01862 TRANSFAC - 85833837 85833848 6.0E-06 GCATGACGTCAG 12 V_NRF2_01_M00108 TRANSFAC - 85833301 85833310 1.0E-06 ACCGGAAGAG 10 V_FOXO3_01_M00477 TRANSFAC + 85833846 85833859 8.0E-06 TGCTTGTTTATTCT 14 V_LMO2COM_02_M00278 TRANSFAC + 85832251 85832259 3.0E-06 CAGATAAGG 9 V_SRF_02_M01257 TRANSFAC + 85832248 85832265 9.0E-06 TGCCAGATAAGGAATCGG 18 V_ZFP281_04_M02831 TRANSFAC + 85834127 85834141 1.0E-06 TCACCTCCCCCCACC 15 V_EKLF_Q5_M01874 TRANSFAC - 85832743 85832752 5.0E-06 CCACACCCTC 10 V_FOXO1_01_M00473 TRANSFAC - 85833848 85833857 1.0E-06 AATAAACAAG 10 V_HNF3B_Q6_M02014 TRANSFAC + 85833779 85833787 6.0E-06 TTGTTTGCT 9 V_HNF3B_Q6_M02014 TRANSFAC + 85833849 85833857 6.0E-06 TTGTTTATT 9 V_DR3_Q4_M00966 TRANSFAC - 85832720 85832740 9.0E-06 CGTGGACTGCATCCCCCTCTT 21 V_HOXC10_01_M01361 TRANSFAC - 85833188 85833203 3.0E-06 GAACGTCGTAAAATGC 16 V_SRY_05_M02917 TRANSFAC - 85833773 85833789 2.0E-06 TGAGCAAACAATAGGCG 17 V_FREAC4_01_M00292 TRANSFAC - 85833846 85833861 7.0E-06 GCAGAATAAACAAGCA 16 V_FOXO4_01_M00472 TRANSFAC - 85833846 85833856 1.0E-06 ATAAACAAGCA 11 V_IPF1_04_M01236 TRANSFAC - 85832296 85832305 6.0E-06 CATTAATCGC 10 V_RNF96_01_M01199 TRANSFAC - 85833018 85833027 7.0E-06 GCCCGCGGCC 10 V_ZIC2_01_M00449 TRANSFAC + 85832876 85832884 6.0E-06 TGGGTGGTC 9 V_RFX1_02_M00281 TRANSFAC + 85832049 85832066 2.0E-06 TAAAAGCCATGGAAACAT 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.