Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SPATA18 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 132671 spermatogenesis associated 18 chr4 + 52912592 - 52918092 52917592 Transcription Factor Binding Sites   Download all TFBS in the SPATA18 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 52920997 52921004 5.0E-06 ATAAACAA 8 PAX6_PAX_DBD_monomeric_19_1 SELEX + 52922120 52922138 4.0E-06 ATAAATGCATGAATAAACC 19 FLI1_ETS_full_monomeric_10_1 SELEX + 52918766 52918775 4.0E-06 ACCGGAAATT 10 ERG_ETS_full_monomeric_10_1 SELEX + 52918766 52918775 6.0E-06 ACCGGAAATT 10 LHX6_homeodomain_full_dimeric_16_1 SELEX + 52918222 52918237 3.0E-06 CAATCAGTGGTAACTA 16 LHX6_homeodomain_full_dimeric_16_1 SELEX - 52918222 52918237 2.0E-06 TAGTTACCACTGATTG 16 FOXF2_MA0030.1 JASPAR + 52912866 52912879 5.0E-06 TTATCATAAACACA 14 FOXF2_MA0030.1 JASPAR - 52920996 52921009 4.0E-06 TCGAGATAAACAAT 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 52920988 52921004 2.0E-06 ATAAACAATGTTAAAAC 17 ESR2_MA0258.1 JASPAR - 52913248 52913265 7.0E-06 GTAAGTCAATTTAACCTC 18 IRX2_homeodomain_DBD_dimeric_12_1 SELEX + 52912928 52912939 9.0E-06 GTACATGAAATG 12 TEF_bZIP_DBD_dimeric_12_1 SELEX + 52918725 52918736 3.0E-06 TCTTACATAATA 12 TEF_bZIP_DBD_dimeric_12_1 SELEX - 52918725 52918736 8.0E-06 TATTATGTAAGA 12 FEV_ETS_DBD_monomeric_10_1 SELEX + 52918766 52918775 6.0E-06 ACCGGAAATT 10 Tp53_p53l_DBD_dimeric_18_2 SELEX + 52918124 52918141 3.0E-06 GACATGTGTGTACATGCC 18 Tp53_p53l_DBD_dimeric_18_2 SELEX - 52918124 52918141 2.0E-06 GGCATGTACACACATGTC 18 HLF_bZIP_full_dimeric_12_1 SELEX + 52918725 52918736 1.0E-06 TCTTACATAATA 12 HLF_bZIP_full_dimeric_12_1 SELEX - 52918725 52918736 1.0E-05 TATTATGTAAGA 12 EWSR1-FLI1_MA0149.1 JASPAR + 52913299 52913316 9.0E-06 GGCAGAAGGCAAGGAGGA 18 ETV1_ETS_DBD_monomeric_10_1 SELEX + 52918766 52918775 8.0E-06 ACCGGAAATT 10 NFIL3_MA0025.1 JASPAR - 52918724 52918734 6.0E-06 TTATGTAAGAG 11 Tp73_p53l_DBD_dimeric_18_1 SELEX + 52918124 52918141 0.0E+00 GACATGTGTGTACATGCC 18 Tp73_p53l_DBD_dimeric_18_1 SELEX - 52918124 52918141 2.0E-06 GGCATGTACACACATGTC 18 DBP_bZIP_full_dimeric_12_1 SELEX + 52918725 52918736 4.0E-06 TCTTACATAATA 12 DBP_bZIP_full_dimeric_12_1 SELEX - 52918725 52918736 3.0E-06 TATTATGTAAGA 12 IRF5_IRF_full_monomeric_11_1 SELEX + 52917900 52917910 9.0E-06 AAACGAAACTT 11 NR2F1_MA0017.1 JASPAR + 52921116 52921129 1.0E-05 TGACCTTAGGTCTT 14 NFKB2_NFAT_DBD_dimeric_13_1 SELEX + 52918713 52918725 5.0E-06 AGGGATTTCCCCT 13 NFKB2_NFAT_DBD_dimeric_13_1 SELEX - 52918713 52918725 5.0E-06 AGGGGAAATCCCT 13 ETV2_ETS_DBD_monomeric_11_1 SELEX + 52918765 52918775 4.0E-06 GACCGGAAATT 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 52921034 52921047 9.0E-06 ATAAAAAGAAAAAA 14 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 52918221 52918238 8.0E-06 CCAATCAGTGGTAACTAA 18 OTX2_homeodomain_DBD_monomeric_8_1 SELEX + 52921099 52921106 7.0E-06 TTAATCCT 8 ETS1_ETS_full_monomeric_10_1 SELEX + 52918766 52918775 5.0E-06 ACCGGAAATT 10 ETV4_ETS_DBD_monomeric_10_1 SELEX + 52918766 52918775 7.0E-06 ACCGGAAATT 10 ELK4_ETS_DBD_monomeric_10_1 SELEX + 52918766 52918775 6.0E-06 ACCGGAAATT 10 SRY_MA0084.1 JASPAR - 52920985 52920993 7.0E-06 TAAAACAAT 9 SRY_MA0084.1 JASPAR - 52920996 52921004 5.0E-06 ATAAACAAT 9 ELK4_MA0076.1 JASPAR + 52918766 52918774 7.0E-06 ACCGGAAAT 9 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 52918725 52918736 1.0E-06 TCTTACATAATA 12 PITX1_homeodomain_full_monomeric_9_1 SELEX + 52921098 52921106 9.0E-06 CTTAATCCT 9 ERF_ETS_DBD_monomeric_10_1 SELEX + 52918766 52918775 7.0E-06 ACCGGAAATT 10 ELK1_ETS_full_monomeric_10_1 SELEX + 52918766 52918775 7.0E-06 ACCGGAAATT 10 PPARG_MA0066.1 JASPAR + 52921084 52921103 3.0E-06 GTAGGGGTATGTGACTTAAT 20 Elk3_ETS_DBD_monomeric_10_1 SELEX + 52918766 52918775 7.0E-06 ACCGGAAATT 10 TP53_MA0106.1 JASPAR + 52918121 52918140 3.0E-06 AAGGACATGTGTGTACATGC 20 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 52920997 52921004 5.0E-06 ATAAACAA 8 HMBOX1_homeodomain_DBD_monomeric_10_1 SELEX - 52918230 52918239 7.0E-06 CTTAGTTACC 10 TP63_p53l_DBD_dimeric_18_1 SELEX + 52918124 52918141 9.0E-06 GACATGTGTGTACATGCC 18 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 52921034 52921047 5.0E-06 ATAAAAAGAAAAAA 14 V_CEBPG_Q6_M00622 TRANSFAC - 52917575 52917587 1.0E-05 ATTATTAAACAAA 13 V_ERG_03_M02062 TRANSFAC + 52918766 52918775 6.0E-06 ACCGGAAATT 10 V_ERM_01_M01992 TRANSFAC + 52918766 52918775 5.0E-06 ACCGGAAATT 10 V_NFKB_C_M00208 TRANSFAC + 52918713 52918724 7.0E-06 AGGGATTTCCCC 12 V_TST1_02_M01316 TRANSFAC + 52918829 52918845 2.0E-06 GTCAAATTATTTAACTT 17 V_FREAC7_01_M00293 TRANSFAC + 52912866 52912881 4.0E-06 TTATCATAAACACAAG 16 V_FREAC7_01_M00293 TRANSFAC - 52920994 52921009 5.0E-06 TCGAGATAAACAATGT 16 V_NFKB_Q6_01_M00774 TRANSFAC - 52918713 52918728 7.0E-06 AAGAGGGGAAATCCCT 16 V_OBOX5_05_M03066 TRANSFAC - 52921094 52921110 8.0E-06 GGCAAGGATTAAGTCAC 17 V_GATA1_Q6_M02004 TRANSFAC - 52912862 52912876 2.0E-06 GTTTATGATAAGAAG 15 V_GABPA_02_M02074 TRANSFAC + 52918766 52918775 2.0E-06 ACCGGAAATT 10 V_SOX30_03_M02804 TRANSFAC - 52920979 52920994 1.0E-05 TTAAAACAATTGCAAC 16 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 52917582 52917593 5.0E-06 AATAATCGCCAG 12 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 52921049 52921060 3.0E-06 AATTGTCAAAAG 12 V_NERF_01_M01976 TRANSFAC + 52918766 52918775 9.0E-06 ACCGGAAATT 10 V_RELBP52_01_M01239 TRANSFAC + 52918020 52918029 8.0E-06 GGGGATTTCT 10 V_ELF1_01_M01975 TRANSFAC + 52918766 52918775 8.0E-06 ACCGGAAATT 10 V_P50P50_Q3_M01223 TRANSFAC + 52918712 52918724 2.0E-06 TAGGGATTTCCCC 13 V_P50P50_Q3_M01223 TRANSFAC - 52918713 52918725 7.0E-06 AGGGGAAATCCCT 13 V_AP2_Q6_01_M00915 TRANSFAC - 52918176 52918188 1.0E-05 CGCTCCGCAGGCC 13 V_FOXJ1_03_M02750 TRANSFAC + 52912868 52912883 2.0E-06 ATCATAAACACAAGTT 16 V_FOXJ1_03_M02750 TRANSFAC - 52917571 52917586 7.0E-06 TTATTAAACAAACCTT 16 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 52918715 52918726 3.0E-06 GGATTTCCCCTC 12 V_HFH4_01_M00742 TRANSFAC + 52917570 52917582 2.0E-06 CAAGGTTTGTTTA 13 V_NKX61_03_M01489 TRANSFAC + 52918830 52918846 1.0E-05 TCAAATTATTTAACTTC 17 V_LHX3_01_M01471 TRANSFAC + 52918831 52918847 4.0E-06 CAAATTATTTAACTTCT 17 V_PU1_Q4_M01172 TRANSFAC + 52917363 52917381 6.0E-06 AGACTTAACTTCTGCTTTT 19 V_FOXP3_01_M01599 TRANSFAC - 52920997 52921004 5.0E-06 ATAAACAA 8 V_BRN2_01_M00145 TRANSFAC + 52918724 52918739 1.0E-05 CTCTTACATAATAAGT 16 V_TCFAP2E_04_M02926 TRANSFAC + 52921028 52921041 7.0E-06 TACTAGATAAAAAG 14 V_HELIOSA_01_M01003 TRANSFAC + 52918710 52918720 6.0E-06 AATAGGGATTT 11 V_CETS2_02_M02064 TRANSFAC + 52918766 52918775 4.0E-06 ACCGGAAATT 10 V_CETS1P54_02_M00074 TRANSFAC + 52918764 52918776 4.0E-06 GGACCGGAAATTA 13 V_HNF1_C_M00206 TRANSFAC - 52917576 52917592 1.0E-06 TGGCGATTATTAAACAA 17 V_ELF4_04_M02850 TRANSFAC - 52918357 52918373 4.0E-06 GTAGTAAAAAATAATTC 17 V_SOX7_03_M02807 TRANSFAC - 52920976 52920997 0.0E+00 ATGTTAAAACAATTGCAACTCA 22 V_ELK1_06_M02059 TRANSFAC + 52918766 52918775 5.0E-06 ACCGGAAATT 10 V_OBOX5_02_M01480 TRANSFAC - 52921094 52921110 8.0E-06 GGCAAGGATTAAGTCAC 17 V_TCF3_04_M02816 TRANSFAC + 52921029 52921045 7.0E-06 ACTAGATAAAAAGAAAA 17 V_DBP_Q6_01_M01872 TRANSFAC - 52918727 52918734 5.0E-06 TTATGTAA 8 V_ELK1_05_M01981 TRANSFAC + 52918766 52918775 5.0E-06 ACCGGAAATT 10 V_CEBPE_Q6_M01868 TRANSFAC + 52922103 52922116 6.0E-06 TAAAATTTCTTGAG 14 V_LMX1_01_M01409 TRANSFAC + 52918831 52918847 8.0E-06 CAAATTATTTAACTTCT 17 V_SAP1A_02_M01983 TRANSFAC + 52918766 52918775 6.0E-06 ACCGGAAATT 10 V_FLI1_02_M02073 TRANSFAC + 52918766 52918775 6.0E-06 ACCGGAAATT 10 V_PET1_02_M02072 TRANSFAC + 52918766 52918775 4.0E-06 ACCGGAAATT 10 V_E4BP4_01_M00045 TRANSFAC - 52918725 52918736 1.0E-06 TATTATGTAAGA 12 V_COUP_01_M00158 TRANSFAC + 52921116 52921129 1.0E-05 TGACCTTAGGTCTT 14 V_HNF1_Q6_M00790 TRANSFAC + 52917577 52917594 7.0E-06 TGTTTAATAATCGCCAGG 18 V_TEF_Q6_M00672 TRANSFAC - 52920986 52920997 1.0E-06 ATGTTAAAACAA 12 V_SOX7_04_M02911 TRANSFAC + 52920979 52921000 7.0E-06 GTTGCAATTGTTTTAACATTGT 22 V_SOX7_04_M02911 TRANSFAC - 52921044 52921065 1.0E-06 GTTCTAATTGTCAAAAGGTTTT 22 V_ERF_01_M01984 TRANSFAC + 52918766 52918775 9.0E-06 ACCGGAAATT 10 V_P53_03_M01651 TRANSFAC + 52918123 52918142 0.0E+00 GGACATGTGTGTACATGCCC 20 V_P53_03_M01651 TRANSFAC - 52918123 52918142 1.0E-06 GGGCATGTACACACATGTCC 20 V_ERG_01_M01752 TRANSFAC + 52918766 52918774 7.0E-06 ACCGGAAAT 9 V_GABPA_01_M02039 TRANSFAC + 52918766 52918775 4.0E-06 ACCGGAAATT 10 V_CETS2_01_M01989 TRANSFAC + 52918766 52918775 9.0E-06 ACCGGAAATT 10 V_SOX18_03_M02801 TRANSFAC + 52920981 52920996 0.0E+00 TGCAATTGTTTTAACA 16 V_PAX6_Q2_M00979 TRANSFAC - 52917998 52918011 4.0E-06 CTGTGCTGGAACCT 14 V_PET1_01_M02037 TRANSFAC + 52918766 52918775 5.0E-06 ACCGGAAATT 10 V_ZBRK1_01_M01105 TRANSFAC - 52918754 52918768 1.0E-05 GGTCCACAGTTCTTT 15 V_TCF7_03_M02817 TRANSFAC + 52921029 52921045 3.0E-06 ACTAGATAAAAAGAAAA 17 V_PAX8_01_M00717 TRANSFAC + 52922119 52922133 3.0E-06 TATAAATGCATGAAT 15 V_ELK1_02_M00025 TRANSFAC + 52918763 52918776 7.0E-06 TGGACCGGAAATTA 14 V_ISGF3G_03_M02771 TRANSFAC + 52917897 52917911 5.0E-06 CTCAAACGAAACTTT 15 V_PMX2B_01_M01356 TRANSFAC - 52918831 52918847 1.0E-05 AGAAGTTAAATAATTTG 17 V_ERF_02_M02061 TRANSFAC + 52918766 52918775 8.0E-06 ACCGGAAATT 10 V_OCT4_02_M01124 TRANSFAC - 52920872 52920886 1.0E-05 TTTCTCTTGATAAGA 15 V_AP1_Q2_01_M00924 TRANSFAC + 52913258 52913269 7.0E-06 TGACTTACAGTT 12 V_LIM1_01_M01418 TRANSFAC + 52918831 52918847 6.0E-06 CAAATTATTTAACTTCT 17 V_PAX8_B_M00328 TRANSFAC + 52922118 52922135 6.0E-06 GTATAAATGCATGAATAA 18 V_ER71_01_M01988 TRANSFAC + 52918766 52918775 5.0E-06 ACCGGAAATT 10 V_EVI1_06_M00011 TRANSFAC + 52921029 52921037 7.0E-06 ACTAGATAA 9 V_NET_01_M01982 TRANSFAC + 52918766 52918775 6.0E-06 ACCGGAAATT 10 V_CETS1P54_03_M01078 TRANSFAC + 52918763 52918778 5.0E-06 TGGACCGGAAATTAGC 16 V_ER81_01_M01987 TRANSFAC + 52918766 52918775 8.0E-06 ACCGGAAATT 10 V_VBP_01_M00228 TRANSFAC + 52918726 52918735 5.0E-06 CTTACATAAT 10 V_FREAC2_01_M00290 TRANSFAC + 52912866 52912881 6.0E-06 TTATCATAAACACAAG 16 V_ZFP105_04_M02931 TRANSFAC - 52918830 52918846 7.0E-06 GAAGTTAAATAATTTGA 17 V_ERM_02_M02069 TRANSFAC + 52918766 52918775 5.0E-06 ACCGGAAATT 10 V_MTF1_06_M02882 TRANSFAC + 52921035 52921048 2.0E-06 TAAAAAGAAAAAAC 14 V_T3R_01_M00239 TRANSFAC - 52921111 52921126 3.0E-06 ACCTAAGGTCATGCCA 16 V_IRF5_03_M02769 TRANSFAC + 52917897 52917911 9.0E-06 CTCAAACGAAACTTT 15 V_BRN4_01_M01473 TRANSFAC + 52918829 52918845 4.0E-06 GTCAAATTATTTAACTT 17 V_HNF1_01_M00132 TRANSFAC + 52918358 52918372 5.0E-06 AATTATTTTTTACTA 15 V_GATA1_04_M00128 TRANSFAC - 52912862 52912874 4.0E-06 TTATGATAAGAAG 13 V_FOXL1_02_M02857 TRANSFAC - 52920982 52920997 5.0E-06 ATGTTAAAACAATTGC 16 V_FOXL1_04_M02753 TRANSFAC + 52912866 52912882 7.0E-06 TTATCATAAACACAAGT 17 V_DMRT7_01_M01151 TRANSFAC + 52920989 52921002 4.0E-06 TTTTAACATTGTTT 14 V_LMX1B_01_M01363 TRANSFAC - 52918831 52918847 3.0E-06 AGAAGTTAAATAATTTG 17 V_DOBOX5_01_M01463 TRANSFAC - 52921094 52921110 4.0E-06 GGCAAGGATTAAGTCAC 17 V_MECP2_02_M01299 TRANSFAC + 52918767 52918776 4.0E-06 CCGGAAATTA 10 V_P53_05_M01655 TRANSFAC + 52918123 52918142 5.0E-06 GGACATGTGTGTACATGCCC 20 V_P53_05_M01655 TRANSFAC - 52918123 52918142 4.0E-06 GGGCATGTACACACATGTCC 20 V_P53_04_M01652 TRANSFAC + 52918123 52918142 9.0E-06 GGACATGTGTGTACATGCCC 20 V_P53_04_M01652 TRANSFAC - 52918123 52918142 2.0E-06 GGGCATGTACACACATGTCC 20 V_P53_04_M01652 TRANSFAC - 52918279 52918298 9.0E-06 AGGCATGACCAGACCAGCCG 20 V_FOX_Q2_M00809 TRANSFAC + 52917570 52917582 6.0E-06 CAAGGTTTGTTTA 13 V_P53_01_M00034 TRANSFAC + 52918123 52918142 4.0E-06 GGACATGTGTGTACATGCCC 20 V_P53_01_M00034 TRANSFAC - 52918123 52918142 4.0E-06 GGGCATGTACACACATGTCC 20 V_SAP1A_03_M02058 TRANSFAC + 52918766 52918775 9.0E-06 ACCGGAAATT 10 V_P63_01_M01656 TRANSFAC - 52918123 52918142 8.0E-06 GGGCATGTACACACATGTCC 20 V_CETS1_02_M02063 TRANSFAC + 52918766 52918775 5.0E-06 ACCGGAAATT 10 V_SRF_06_M02916 TRANSFAC - 52918357 52918373 2.0E-06 GTAGTAAAAAATAATTC 17 V_SRF_06_M02916 TRANSFAC + 52921033 52921049 5.0E-06 GATAAAAAGAAAAAACC 17 V_SRF_06_M02916 TRANSFAC + 52921034 52921050 2.0E-06 ATAAAAAGAAAAAACCT 17 V_SRF_06_M02916 TRANSFAC + 52921036 52921052 8.0E-06 AAAAAGAAAAAACCTTT 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 52913299 52913316 9.0E-06 GGCAGAAGGCAAGGAGGA 18 V_VDR_Q3_M00444 TRANSFAC + 52918113 52918127 3.0E-06 GGGGAAGGAAGGACA 15 V_NET_02_M02060 TRANSFAC + 52918766 52918775 4.0E-06 ACCGGAAATT 10 V_FOXO1_01_M00473 TRANSFAC + 52912870 52912879 9.0E-06 CATAAACACA 10 V_FOXO1_01_M00473 TRANSFAC - 52920996 52921005 9.0E-06 GATAAACAAT 10 V_PPARG_02_M00515 TRANSFAC - 52913245 52913267 2.0E-06 CTGTAAGTCAATTTAACCTCTTT 23 V_ELF_02_M02053 TRANSFAC + 52918766 52918775 1.0E-05 ACCGGAAATT 10 V_SOX12_03_M02796 TRANSFAC + 52920983 52920996 2.0E-06 CAATTGTTTTAACA 14 V_LHX5_01_M01353 TRANSFAC + 52918831 52918847 3.0E-06 CAAATTATTTAACTTCT 17 V_CEBP_Q2_01_M00912 TRANSFAC + 52918726 52918737 8.0E-06 CTTACATAATAA 12 V_HOXA10_01_M01464 TRANSFAC - 52918361 52918376 9.0E-06 GTTGTAGTAAAAAATA 16 V_GATA6_04_M02757 TRANSFAC - 52920868 52920884 2.0E-06 TCTCTTGATAAGAGATC 17 V_TAACC_B_M00331 TRANSFAC - 52922168 52922190 5.0E-06 AGAAGAATAAGGAGGCCGAAGAA 23 V_OBOX5_01_M01381 TRANSFAC - 52921094 52921110 5.0E-06 GGCAAGGATTAAGTCAC 17 V_IRXB3_01_M01377 TRANSFAC - 52912924 52912940 6.0E-06 TCATTTCATGTACATCT 17 V_ZIC2_04_M02836 TRANSFAC - 52917973 52917987 9.0E-06 GAACCCCGGGGGTTT 15 V_OTX1_01_M01366 TRANSFAC - 52921094 52921110 9.0E-06 GGCAAGGATTAAGTCAC 17 V_ER71_02_M02067 TRANSFAC + 52918766 52918775 5.0E-06 ACCGGAAATT 10 V_OBOX6_06_M03067 TRANSFAC + 52921094 52921110 5.0E-06 GTGACTTAATCCTTGCC 17 V_FOXK1_03_M02752 TRANSFAC - 52920993 52921009 9.0E-06 TCGAGATAAACAATGTT 17 V_SMAD1_01_M01590 TRANSFAC + 52921036 52921047 3.0E-06 AAAAAGAAAAAA 12 V_ESR2_01_M02377 TRANSFAC - 52913248 52913265 7.0E-06 GTAAGTCAATTTAACCTC 18 V_ELF4_02_M02056 TRANSFAC + 52918766 52918775 7.0E-06 ACCGGAAATT 10 V_GATA1_06_M00347 TRANSFAC + 52921030 52921039 3.0E-06 CTAGATAAAA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.