Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LYPD6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 130574 LY6/PLAUR domain containing 6 chr2 + 150181498 - 150187528 150187028 Transcription Factor Binding Sites   Download all TFBS in the LYPD6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX21_TBX_full_dimeric_16_1 SELEX - 150186616 150186631 6.0E-06 AGTGTGAAATGACCCT 16 SP8_C2H2_DBD_monomeric_12_1 SELEX - 150187046 150187057 2.0E-06 GCCACTCCCACT 12 EVX2_homeodomain_DBD_monomeric_10_1 SELEX - 150185770 150185779 2.0E-06 AATAATTAGC 10 VSX2_homeodomain_DBD_monomeric_8_1 SELEX + 150185771 150185778 5.0E-06 CTAATTAT 8 DLX1_homeodomain_DBD_monomeric_10_1 SELEX - 150185770 150185779 4.0E-06 AATAATTAGC 10 IRF7_IRF_DBD_dimeric_14_1 SELEX + 150190798 150190811 9.0E-06 ACGATAATGAAAGT 14 FOXA1_MA0148.1 JASPAR - 150186730 150186740 2.0E-06 TGTTTGCTCAG 11 EVX1_homeodomain_DBD_monomeric_10_1 SELEX - 150185770 150185779 2.0E-06 AATAATTAGC 10 NHLH1_MA0048.1 JASPAR + 150186651 150186662 4.0E-06 ACGCAGCTGCTG 12 NHLH1_MA0048.1 JASPAR - 150186651 150186662 3.0E-06 CAGCAGCTGCGT 12 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 150187505 150187515 5.0E-06 TGGAAAGGTCA 11 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 150187507 150187519 9.0E-06 GAAAGGTCAGGAG 13 IRF8_IRF_full_dimeric_14_1 SELEX + 150190798 150190811 8.0E-06 ACGATAATGAAAGT 14 SOX8_HMG_full_dimeric_17_1 SELEX - 150190775 150190791 3.0E-06 AATCCATTGCAAGGATT 17 NFYA_MA0060.1 JASPAR + 150186929 150186944 8.0E-06 CCGGGCCAATGAGCGC 16 NFYA_MA0060.1 JASPAR - 150186975 150186990 3.0E-06 CGGGACCAATCAGCGC 16 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX + 150190795 150190806 5.0E-06 AAAACGATAATG 12 Hoxa2_homeodomain_DBD_monomeric_10_1 SELEX - 150185770 150185779 8.0E-06 AATAATTAGC 10 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX - 150185770 150185779 1.0E-05 AATAATTAGC 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 150185770 150185779 1.0E-06 AATAATTAGC 10 EMX1_homeodomain_DBD_monomeric_10_1 SELEX - 150185770 150185779 8.0E-06 AATAATTAGC 10 NKX2-3_homeodomain_full_monomeric_10_1 SELEX - 150186508 150186517 4.0E-06 ACCACTTGAC 10 IRF9_IRF_full_trimeric_15_1 SELEX + 150190797 150190811 4.0E-06 AACGATAATGAAAGT 15 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX - 150185770 150185779 9.0E-06 AATAATTAGC 10 POU6F2_POU_full_monomeric_10_1 SELEX + 150185770 150185779 5.0E-06 GCTAATTATT 10 NR3C1_MA0113.1 JASPAR + 150186316 150186333 2.0E-06 AAAACCAATACGTCCCAA 18 EMX2_homeodomain_DBD_monomeric_10_1 SELEX - 150185770 150185779 9.0E-06 AATAATTAGC 10 NFE2L2_MA0150.1 JASPAR - 150190929 150190939 6.0E-06 ATTACTCAGCA 11 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 150186314 150186327 7.0E-06 GAAAAACCAATACG 14 V_OSR1_03_M02784 TRANSFAC - 150190914 150190929 6.0E-06 AAAAACAGAAGCAAAG 16 V_MSX3_01_M01341 TRANSFAC - 150185768 150185783 9.0E-06 AAAAAATAATTAGCGC 16 V_ZSCAN4_03_M02838 TRANSFAC + 150185810 150185826 1.0E-06 AGCCTGTGCACATACAC 17 V_FOXP3_Q4_M00992 TRANSFAC - 150185826 150185842 3.0E-06 GAAAGTTTTTCTCTTAG 17 V_GATA2_02_M00348 TRANSFAC + 150190887 150190896 5.0E-06 AGAGATAAAA 10 V_DLX3_01_M01400 TRANSFAC - 150185767 150185783 5.0E-06 AAAAAATAATTAGCGCC 17 V_HMGIY_Q3_M01010 TRANSFAC + 150190755 150190769 3.0E-06 AAGTGAATTTGTTAA 15 V_HMGIY_Q3_M01010 TRANSFAC - 150190768 150190782 5.0E-06 CAAGGATTTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC + 150190759 150190773 7.0E-06 GAATTTGTTAAAAAA 15 V_BCL6_01_M01183 TRANSFAC - 150190770 150190785 8.0E-06 TTGCAAGGATTTTTTT 16 V_GM397_03_M02760 TRANSFAC - 150185809 150185825 6.0E-06 TGTATGTGCACAGGCTT 17 V_GM397_03_M02760 TRANSFAC + 150185810 150185826 3.0E-06 AGCCTGTGCACATACAC 17 V_SPDEF_04_M02915 TRANSFAC + 150190770 150190785 9.0E-06 AAAAAAATCCTTGCAA 16 V_MAFB_03_M02879 TRANSFAC - 150186397 150186411 5.0E-06 TTGGTGCAAAAAAGT 15 V_PROP1_01_M01294 TRANSFAC + 150185772 150185782 6.0E-06 TAATTATTTTT 11 V_HNF4_Q6_M00967 TRANSFAC - 150186393 150186401 1.0E-05 AAAGTCCAG 9 V_GBX2_01_M01382 TRANSFAC + 150185767 150185783 5.0E-06 GGCGCTAATTATTTTTT 17 V_P50P50_Q3_M01223 TRANSFAC - 150190804 150190816 7.0E-06 AAGGGACTTTCAT 13 V_CART1_02_M01362 TRANSFAC + 150185767 150185783 8.0E-06 GGCGCTAATTATTTTTT 17 V_NKX61_03_M01489 TRANSFAC - 150185767 150185783 3.0E-06 AAAAAATAATTAGCGCC 17 V_TR4_Q2_M01725 TRANSFAC - 150187507 150187517 1.0E-06 CCTGACCTTTC 11 V_OCTAMER_02_M01477 TRANSFAC - 150185767 150185783 9.0E-06 AAAAAATAATTAGCGCC 17 V_AP4_Q6_02_M01860 TRANSFAC - 150187199 150187211 7.0E-06 CCAGCTGCAGCCC 13 V_COUPTF_Q6_M01036 TRANSFAC - 150187498 150187520 9.0E-06 GCTCCTGACCTTTCCATCCCACC 23 V_PSX1_01_M01435 TRANSFAC - 150185766 150185782 6.0E-06 AAAAATAATTAGCGCCC 17 V_EVX1_01_M01475 TRANSFAC - 150185766 150185782 2.0E-06 AAAAATAATTAGCGCCC 17 V_K2B_01_M01348 TRANSFAC + 150185767 150185783 7.0E-06 GGCGCTAATTATTTTTT 17 V_NR3C1_01_M02219 TRANSFAC + 150186316 150186333 2.0E-06 AAAACCAATACGTCCCAA 18 V_TCFAP2E_04_M02926 TRANSFAC + 150190763 150190776 1.0E-06 TTGTTAAAAAAAAA 14 V_NKX62_Q2_M00489 TRANSFAC - 150185770 150185781 1.0E-06 AAAATAATTAGC 12 V_LHX8_01_M01440 TRANSFAC - 150185766 150185782 1.0E-05 AAAAATAATTAGCGCCC 17 V_PAX_Q6_M00808 TRANSFAC + 150187342 150187352 5.0E-06 CTGGAACTACC 11 V_EVX2_01_M01386 TRANSFAC + 150185766 150185782 4.0E-06 GGGCGCTAATTATTTTT 17 V_LHX61_01_M01314 TRANSFAC + 150185766 150185782 2.0E-06 GGGCGCTAATTATTTTT 17 V_ELF4_04_M02850 TRANSFAC + 150190762 150190778 2.0E-06 TTTGTTAAAAAAAAATC 17 V_ELF4_04_M02850 TRANSFAC + 150190763 150190779 2.0E-06 TTGTTAAAAAAAAATCC 17 V_ELF4_04_M02850 TRANSFAC + 150190764 150190780 3.0E-06 TGTTAAAAAAAAATCCT 17 V_ELF4_04_M02850 TRANSFAC + 150190765 150190781 0.0E+00 GTTAAAAAAAAATCCTT 17 V_EN1_02_M01365 TRANSFAC - 150185768 150185783 1.0E-06 AAAAAATAATTAGCGC 16 V_PR_Q2_M00960 TRANSFAC + 150187268 150187277 9.0E-06 AAAAGAACAG 10 V_SPI1_03_M02078 TRANSFAC + 150187379 150187388 1.0E-05 AGAGGAACTG 10 V_NKX26_01_M01322 TRANSFAC - 150186505 150186520 5.0E-06 GAGACCACTTGACGTT 16 V_HNF3_Q6_M00791 TRANSFAC + 150186730 150186742 8.0E-06 CTGAGCAAACACT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 150186730 150186740 1.0E-05 TGTTTGCTCAG 11 V_STAT5A_02_M00460 TRANSFAC - 150186759 150186782 1.0E-06 TTCCCGGGAAGCCTGTTCCCAGTG 24 V_LHX2_01_M01325 TRANSFAC - 150185766 150185782 1.0E-06 AAAAATAATTAGCGCCC 17 V_HNF1_Q6_01_M01011 TRANSFAC + 150190761 150190781 5.0E-06 ATTTGTTAAAAAAAAATCCTT 21 V_NKX22_02_M01372 TRANSFAC - 150186504 150186520 8.0E-06 GAGACCACTTGACGTTT 17 V_OCT1_04_M00138 TRANSFAC - 150185773 150185795 7.0E-06 GTTCAAGTAGGCAAAAAATAATT 23 V_BBX_04_M02843 TRANSFAC + 150190760 150190776 8.0E-06 AATTTGTTAAAAAAAAA 17 V_NCX_02_M01420 TRANSFAC + 150190759 150190775 8.0E-06 GAATTTGTTAAAAAAAA 17 V_MAFK_Q3_M02022 TRANSFAC - 150190928 150190938 5.0E-06 TTACTCAGCAA 11 V_NR1B1_Q6_M02110 TRANSFAC + 150187508 150187517 9.0E-06 AAAGGTCAGG 10 V_EMX2_01_M01461 TRANSFAC - 150185766 150185782 5.0E-06 AAAAATAATTAGCGCCC 17 V_NKX63_01_M01470 TRANSFAC - 150185767 150185783 3.0E-06 AAAAAATAATTAGCGCC 17 V_BLIMP1_Q6_M01066 TRANSFAC + 150190751 150190766 6.0E-06 CCAAAAGTGAATTTGT 16 V_ISGF4G_04_M02875 TRANSFAC - 150185772 150185785 7.0E-06 GCAAAAAATAATTA 14 V_FOXO1_Q5_M01216 TRANSFAC - 150190921 150190929 1.0E-05 AAAAACAGA 9 V_EN2_01_M01455 TRANSFAC - 150185766 150185782 9.0E-06 AAAAATAATTAGCGCCC 17 V_DLX7_01_M01486 TRANSFAC - 150185767 150185783 6.0E-06 AAAAAATAATTAGCGCC 17 V_CIZ_01_M00734 TRANSFAC - 150185776 150185784 6.0E-06 CAAAAAATA 9 V_NFYC_Q5_M02107 TRANSFAC + 150186931 150186944 3.0E-06 GGGCCAATGAGCGC 14 V_NFYC_Q5_M02107 TRANSFAC - 150186975 150186988 2.0E-06 GGACCAATCAGCGC 14 V_NKX25_03_M01414 TRANSFAC - 150186505 150186520 8.0E-06 GAGACCACTTGACGTT 16 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC + 150187495 150187503 8.0E-06 GAGGGTGGG 9 V_BARHL1_01_M01332 TRANSFAC - 150185768 150185783 2.0E-06 AAAAAATAATTAGCGC 16 V_FOXL1_02_M02857 TRANSFAC - 150190759 150190774 1.0E-05 TTTTTTTAACAAATTC 16 V_GATA3_02_M00350 TRANSFAC + 150190887 150190896 2.0E-06 AGAGATAAAA 10 V_MSX2_01_M01393 TRANSFAC + 150185766 150185782 6.0E-06 GGGCGCTAATTATTTTT 17 V_MSX2_01_M01393 TRANSFAC - 150185767 150185783 8.0E-06 AAAAAATAATTAGCGCC 17 V_TFIIA_Q6_M00707 TRANSFAC - 150190810 150190821 6.0E-06 TATTTAAGGGAC 12 V_TCF7_04_M02921 TRANSFAC + 150190761 150190775 7.0E-06 ATTTGTTAAAAAAAA 15 V_NFY_01_M00287 TRANSFAC + 150186929 150186944 6.0E-06 CCGGGCCAATGAGCGC 16 V_NFY_01_M00287 TRANSFAC - 150186975 150186990 2.0E-06 CGGGACCAATCAGCGC 16 V_OSR2_03_M02785 TRANSFAC - 150190914 150190929 7.0E-06 AAAAACAGAAGCAAAG 16 V_PADS_C_M00211 TRANSFAC + 150186512 150186520 8.0E-06 AGTGGTCTC 9 V_ZBTB12_03_M02824 TRANSFAC + 150186257 150186273 7.0E-06 CTAAGGCTCTAGATCGA 17 V_CHX10_01_M00437 TRANSFAC - 150185767 150185780 6.0E-06 AAATAATTAGCGCC 14 V_NUR77_Q5_M01217 TRANSFAC - 150187507 150187516 7.0E-06 CTGACCTTTC 10 V_GATA2_03_M00349 TRANSFAC + 150190887 150190896 3.0E-06 AGAGATAAAA 10 V_SRF_06_M02916 TRANSFAC + 150190763 150190779 2.0E-06 TTGTTAAAAAAAAATCC 17 V_SRF_06_M02916 TRANSFAC + 150190764 150190780 4.0E-06 TGTTAAAAAAAAATCCT 17 V_SRF_06_M02916 TRANSFAC + 150190765 150190781 0.0E+00 GTTAAAAAAAAATCCTT 17 V_SOX18_04_M02905 TRANSFAC + 150190754 150190769 3.0E-06 AAAGTGAATTTGTTAA 16 V_NKX12_01_M01427 TRANSFAC + 150185766 150185782 5.0E-06 GGGCGCTAATTATTTTT 17 V_PAX4_02_M00377 TRANSFAC - 150185770 150185780 1.0E-06 AAATAATTAGC 11 V_BARHL2_01_M01446 TRANSFAC - 150185768 150185783 4.0E-06 AAAAAATAATTAGCGC 16 V_MEF2_01_M00006 TRANSFAC + 150190764 150190779 4.0E-06 TGTTAAAAAAAAATCC 16 V_ARP1_01_M00155 TRANSFAC + 150187335 150187350 4.0E-06 TGAGTCCCTGGAACTA 16 V_NFE2L2_01_M02263 TRANSFAC - 150190929 150190939 6.0E-06 ATTACTCAGCA 11 V_CMAF_01_M01070 TRANSFAC + 150190924 150190942 1.0E-06 GTTTTTGCTGAGTAATATT 19 V_NFYA_Q5_M02106 TRANSFAC + 150186931 150186944 7.0E-06 GGGCCAATGAGCGC 14 V_NFYA_Q5_M02106 TRANSFAC - 150186975 150186988 7.0E-06 GGACCAATCAGCGC 14 V_RNF96_01_M01199 TRANSFAC - 150187016 150187025 7.0E-06 GCCCGCAGCC 10 V_TCF3_05_M02920 TRANSFAC - 150185773 150185787 1.0E-06 AGGCAAAAAATAATT 15 V_GLIS2_04_M02863 TRANSFAC + 150190762 150190775 3.0E-06 TTTGTTAAAAAAAA 14 V_GBX1_01_M01371 TRANSFAC + 150185766 150185782 3.0E-06 GGGCGCTAATTATTTTT 17 V_HOXA4_Q2_M00640 TRANSFAC - 150185771 150185778 5.0E-06 ATAATTAG 8 V_SOX14_03_M02798 TRANSFAC + 150185770 150185785 4.0E-06 GCTAATTATTTTTTGC 16 V_SOX14_03_M02798 TRANSFAC - 150185770 150185785 5.0E-06 GCAAAAAATAATTAGC 16 V_GATA1_06_M00347 TRANSFAC + 150190887 150190896 8.0E-06 AGAGATAAAA 10 V_NKX21_01_M01312 TRANSFAC - 150186505 150186520 6.0E-06 GAGACCACTTGACGTT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.