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COL9A2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1298 collagen, type IX, alpha 2 chr1 - 40782439 - 40787939 40782939 Transcription Factor Binding Sites   Download all TFBS in the COL9A2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 40778182 40778200 7.0E-06 GGACCTGCAGAGGGAGCCA 19 SOX10_HMG_full_dimeric_15_3 SELEX - 40782044 40782058 4.0E-06 TTGAATTGCAGGCAA 15 ZNF306_C2H2_full_monomeric_14_1 SELEX + 40784769 40784782 1.0E-05 TGGGCTAACCACAA 14 NFIA_NFI_full_dimeric_15_1 SELEX + 40778691 40778705 0.0E+00 TTGGCTTTATGCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 40778691 40778705 2.0E-06 CTGGCATAAAGCCAA 15 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 40782993 40783003 1.0E-05 GCCCCGCCCCC 11 RARA_nuclearreceptor_full_dimeric_18_1 SELEX - 40782672 40782689 3.0E-06 AGAGGCCACCTGAGGACA 18 POU3F2_POU_DBD_monomeric_13_1 SELEX + 40781498 40781510 9.0E-06 CATGCATTCATTA 13 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX - 40779424 40779436 9.0E-06 CCAAGGTCACAGG 13 SOX9_HMG_full_dimeric_17_3 SELEX - 40782043 40782059 5.0E-06 ATTGAATTGCAGGCAAA 17 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 40781845 40781856 2.0E-06 GGTTTTCCCGCA 12 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 40781592 40781605 5.0E-06 AGGGTCCATGGTCA 14 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 40782087 40782100 4.0E-06 GAGGTCACAAGTCA 14 FOXD1_MA0031.1 JASPAR + 40780742 40780749 7.0E-06 GTAAACAT 8 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX + 40779537 40779553 3.0E-06 CAGGGCACACAAGGACA 17 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 40779491 40779501 5.0E-06 AGCCCCAGGCA 11 NFIX_NFI_full_dimeric_15_2 SELEX + 40778691 40778705 1.0E-06 TTGGCTTTATGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 40778691 40778705 0.0E+00 CTGGCATAAAGCCAA 15 Esrrb_MA0141.1 JASPAR - 40779428 40779439 7.0E-06 CCCCCAAGGTCA 12 SOX7_HMG_full_dimeric_17_2 SELEX - 40782043 40782059 3.0E-06 ATTGAATTGCAGGCAAA 17 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX + 40779396 40779408 3.0E-06 TGCCCCTGGGGCT 13 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 40779491 40779501 6.0E-06 AGCCCCAGGCA 11 E2F2_E2F_DBD_dimeric_16_1 SELEX - 40782173 40782188 8.0E-06 AAAGGGCCGCCTTTTA 16 ZNF238_C2H2_full_monomeric_13_1 SELEX + 40780919 40780931 2.0E-06 CGTCCAGATGTGC 13 TFAP2C_TFAP_full_dimeric_13_1 SELEX + 40779396 40779408 9.0E-06 TGCCCCTGGGGCT 13 TFAP2C_TFAP_full_dimeric_13_1 SELEX - 40779396 40779408 9.0E-06 AGCCCCAGGGGCA 13 Klf4_MA0039.2 JASPAR - 40779554 40779563 5.0E-06 TGGGTGGGGC 10 Tcfcp2l1_MA0145.1 JASPAR - 40780865 40780878 7.0E-06 CCAGCTTGGGCCAG 14 Tcfcp2l1_MA0145.1 JASPAR - 40782412 40782425 2.0E-06 CCGGCTCCAACCAG 14 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 40784774 40784782 1.0E-05 TAACCACAA 9 SOX8_HMG_full_dimeric_13_1 SELEX - 40782046 40782058 1.0E-05 TTGAATTGCAGGC 13 SP1_MA0079.2 JASPAR - 40782993 40783002 7.0E-06 CCCCGCCCCC 10 FOXI1_MA0042.1 JASPAR + 40784731 40784742 2.0E-06 AGTTGTTTGTTT 12 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 40779201 40779213 3.0E-06 AACTGATGCAACA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 40779200 40779213 8.0E-06 GAACTGATGCAACA 14 CTCF_C2H2_full_monomeric_17_1 SELEX + 40781130 40781146 7.0E-06 GGCGCCGCCTATTGGCG 17 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX - 40782672 40782688 6.0E-06 GAGGCCACCTGAGGACA 17 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX + 40779396 40779408 2.0E-06 TGCCCCTGGGGCT 13 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX - 40779396 40779408 6.0E-06 AGCCCCAGGGGCA 13 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 40779491 40779501 6.0E-06 AGCCCCAGGCA 11 NFIB_NFI_full_dimeric_15_1 SELEX + 40778691 40778705 0.0E+00 TTGGCTTTATGCCAG 15 NFIB_NFI_full_dimeric_15_1 SELEX - 40778691 40778705 3.0E-06 CTGGCATAAAGCCAA 15 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX + 40779396 40779408 3.0E-06 TGCCCCTGGGGCT 13 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX - 40779396 40779408 9.0E-06 AGCCCCAGGGGCA 13 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 40779426 40779436 6.0E-06 CCAAGGTCACA 11 SOX18_HMG_full_dimeric_15_3 SELEX - 40782044 40782058 7.0E-06 TTGAATTGCAGGCAA 15 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX - 40783509 40783528 6.0E-06 GGGAGGTGAAAGCGAGGTGA 20 Sox3_HMG_DBD_dimeric_17_3 SELEX - 40782043 40782059 3.0E-06 ATTGAATTGCAGGCAAA 17 RUNX1_MA0002.2 JASPAR - 40784774 40784784 9.0E-06 TCTTGTGGTTA 11 Sox2_MA0143.1 JASPAR - 40781095 40781109 1.0E-06 CGTTTGTTCTGCAAA 15 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 40779491 40779501 6.0E-06 AGCCCCAGGCA 11 RORA_2_MA0072.1 JASPAR - 40779360 40779373 8.0E-06 TTACACTGGGTCAG 14 V_MEQ_01_M02049 TRANSFAC + 40781343 40781351 7.0E-06 AACACACAC 9 V_FOXP1_01_M00987 TRANSFAC + 40784800 40784819 7.0E-06 TAAGTTTTCTTTTTGTGTGT 20 V_HSF2_01_M00147 TRANSFAC + 40781463 40781472 4.0E-06 AGAATCTTCT 10 V_HSF2_01_M00147 TRANSFAC - 40781463 40781472 8.0E-06 AGAAGATTCT 10 V_AP2ALPHA_Q6_M01857 TRANSFAC + 40782335 40782345 9.0E-06 AGCCCCCGGCG 11 V_AML_Q6_M00769 TRANSFAC - 40784772 40784786 9.0E-06 TTTCTTGTGGTTAGC 15 V_FXR_Q3_M00631 TRANSFAC - 40782053 40782066 4.0E-06 CAGGGGCATTGAAT 14 V_SREBP2_Q6_M01177 TRANSFAC - 40782676 40782687 1.0E-06 AGGCCACCTGAG 12 V_PAX4_03_M00378 TRANSFAC + 40780790 40780801 7.0E-06 AACCCTCACCCT 12 V_NF1A_Q6_M02103 TRANSFAC + 40778691 40778706 0.0E+00 TTGGCTTTATGCCAGA 16 V_MTF1_Q4_M00650 TRANSFAC - 40783475 40783488 1.0E-05 GGTGCACACAGCTC 14 V_COE1_Q6_M01871 TRANSFAC - 40782056 40782069 7.0E-06 ACCCAGGGGCATTG 14 V_AML3_Q6_M01856 TRANSFAC + 40784775 40784782 1.0E-05 AACCACAA 8 V_ETS_B_M00340 TRANSFAC - 40778327 40778340 8.0E-06 GAGAGGAAGTAGGA 14 V_GATA3_03_M00351 TRANSFAC + 40782165 40782174 4.0E-06 AGAGATCTTA 10 V_SPIB_02_M02041 TRANSFAC - 40778330 40778339 1.0E-06 AGAGGAAGTA 10 V_SP1_Q6_01_M00931 TRANSFAC + 40782994 40783003 4.0E-06 GGGGCGGGGC 10 V_RP58_01_M00532 TRANSFAC - 40780921 40780932 2.0E-06 GGCACATCTGGA 12 V_AP2_Q6_01_M00915 TRANSFAC + 40782262 40782274 9.0E-06 CGCCCCGCAGGCG 13 V_SP1_03_M02281 TRANSFAC - 40782993 40783002 7.0E-06 CCCCGCCCCC 10 V_AP2_Q6_M00189 TRANSFAC - 40780759 40780770 9.0E-06 CTCCCGCAGGAG 12 V_GKLF_02_M01588 TRANSFAC + 40779554 40779565 5.0E-06 GCCCCACCCAAC 12 V_GKLF_02_M01588 TRANSFAC + 40782283 40782294 3.0E-06 ACCACACCCAGC 12 V_SP1_02_M01303 TRANSFAC + 40782999 40783009 8.0E-06 GGGGCGGGGGC 11 V_COUPTF_Q6_M01036 TRANSFAC - 40779498 40779520 1.0E-06 TCCCCTGACCCCTACCCACAGCC 23 V_PU1_Q4_M01172 TRANSFAC + 40778324 40778342 1.0E-06 GGCTCCTACTTCCTCTCTA 19 V_OCT2_02_M01761 TRANSFAC + 40782983 40782992 1.0E-05 TGAATATGCG 10 V_WT1_Q6_01_M02036 TRANSFAC - 40782441 40782450 4.0E-06 CGCCCCCGCC 10 V_CP2_02_M00947 TRANSFAC + 40782411 40782425 8.0E-06 TCTGGTTGGAGCCGG 15 V_TRF1_01_M01237 TRANSFAC - 40780789 40780803 5.0E-06 GCAGGGTGAGGGTTA 15 V_SPIC_01_M02042 TRANSFAC - 40778330 40778339 1.0E-06 AGAGGAAGTA 10 V_HMBOX1_01_M01456 TRANSFAC + 40780734 40780750 8.0E-06 CCAGACTGGTAAACATC 17 V_BACH1_01_M00495 TRANSFAC + 40779480 40779494 8.0E-06 CTCCTGAGTCATGCC 15 V_ZNF219_01_M01122 TRANSFAC + 40783488 40783499 1.0E-05 CTCCCCCACCCC 12 V_EGR1_01_M00243 TRANSFAC - 40781449 40781460 6.0E-06 ATACGTGGGAGT 12 V_SPI1_03_M02078 TRANSFAC - 40778330 40778339 1.0E-06 AGAGGAAGTA 10 V_SPI1_03_M02078 TRANSFAC - 40783502 40783511 6.0E-06 TGAGGAAGTT 10 V_HNF3G_Q4_M02015 TRANSFAC + 40784734 40784741 7.0E-06 TGTTTGTT 8 V_RUNX1_01_M02257 TRANSFAC - 40784774 40784784 9.0E-06 TCTTGTGGTTA 11 V_GFI1_01_M00250 TRANSFAC + 40781717 40781740 8.0E-06 CTCAAATAAATCACAGATGGAATG 24 V_ZBED6_01_M01598 TRANSFAC - 40782269 40782280 2.0E-06 CGAGCTCGCCTG 12 Hand1_Tcfe2a_MA0092.1 JASPAR - 40778699 40778708 1.0E-06 GGTCTGGCAT 10 V_AML2_01_M01759 TRANSFAC + 40784775 40784782 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC - 40782439 40782452 1.0E-06 TCCGCCCCCGCCGC 14 V_AP1_Q6_01_M00925 TRANSFAC - 40779483 40779491 7.0E-06 ATGACTCAG 9 V_SP1_Q6_M00196 TRANSFAC + 40782992 40783004 1.0E-06 GGGGGGCGGGGCG 13 V_MAZ_Q6_01_M02023 TRANSFAC + 40779523 40779536 8.0E-06 AGCGGAGGAAAGGA 14 V_AP2BETA_Q3_M01858 TRANSFAC - 40782329 40782344 3.0E-06 GCCGGGGGCTGCGGGC 16 V_EGR1_Q6_M01873 TRANSFAC + 40782442 40782451 4.0E-06 GCGGGGGCGG 10 V_LXR_DR4_Q3_M00766 TRANSFAC + 40779361 40779376 1.0E-06 TGACCCAGTGTAACCC 16 V_SOX12_04_M02900 TRANSFAC - 40781210 40781225 3.0E-06 CGGCAGACAAAGGAGA 16 V_SOX12_04_M02900 TRANSFAC - 40784804 40784819 8.0E-06 ACACACAAAAAGAAAA 16 V_PEBP_Q6_M00984 TRANSFAC + 40784772 40784786 3.0E-06 GCTAACCACAAGAAA 15 V_RREB1_01_M00257 TRANSFAC + 40781181 40781194 9.0E-06 CCCCACCCCCACCA 14 V_AP1_C_M00199 TRANSFAC - 40779483 40779491 6.0E-06 ATGACTCAG 9 V_PNR_01_M01650 TRANSFAC + 40782087 40782100 8.0E-06 GAGGTCACAAGTCA 14 V_POU6F1_01_M00465 TRANSFAC + 40781501 40781511 1.0E-05 GCATTCATTAT 11 V_CTCF_01_M01200 TRANSFAC - 40778182 40778201 1.0E-06 GGGACCTGCAGAGGGAGCCA 20 V_MAF_Q6_01_M00983 TRANSFAC + 40779481 40779491 1.0E-06 TCCTGAGTCAT 11 V_CETS1P54_03_M01078 TRANSFAC - 40778327 40778342 9.0E-06 TAGAGAGGAAGTAGGA 16 V_SF1_Q6_01_M01132 TRANSFAC + 40779428 40779436 7.0E-06 TGACCTTGG 9 V_ZFP691_04_M02937 TRANSFAC - 40778726 40778742 7.0E-06 TTCTAGACTCCTGAACC 17 V_TFIII_Q6_M00706 TRANSFAC - 40781959 40781967 6.0E-06 AGAGGGAGG 9 V_SP4_Q5_M01273 TRANSFAC - 40782993 40783003 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 40782998 40783008 7.0E-06 CCCCCGCCCCG 11 V_PTF1BETA_Q6_M00657 TRANSFAC + 40779527 40779540 2.0E-06 GAGGAAAGGACAGG 14 V_AP1_Q4_01_M00926 TRANSFAC + 40779484 40779491 1.0E-05 TGAGTCAT 8 V_FXR_IR1_Q6_M00767 TRANSFAC - 40781247 40781259 6.0E-06 AAGTCTCTAACCT 13 V_LBP9_01_M01592 TRANSFAC - 40780862 40780878 7.0E-06 CCAGCTTGGGCCAGACT 17 V_LBP9_01_M01592 TRANSFAC - 40782409 40782425 9.0E-06 CCGGCTCCAACCAGACG 17 V_MYF6_04_M02885 TRANSFAC + 40779547 40779561 5.0E-06 AAGGACAGCCCCACC 15 V_FAC1_01_M00456 TRANSFAC - 40784806 40784819 4.0E-06 ACACACAAAAAGAA 14 V_SMAD4_04_M02898 TRANSFAC + 40782483 40782499 3.0E-06 TATGCCCCGCCACCTGG 17 V_GATA3_02_M00350 TRANSFAC - 40784749 40784758 8.0E-06 AGAGATAAGT 10 V_T3R_Q6_M00963 TRANSFAC - 40779532 40779540 7.0E-06 CCTGTCCTT 9 NR1H2_RXRA_MA0115.1 JASPAR + 40781591 40781607 6.0E-06 AAGGGTCCATGGTCACT 17 V_ERR2_01_M01589 TRANSFAC - 40779425 40779436 3.0E-06 CCAAGGTCACAG 12 V_ESRRA_04_M02852 TRANSFAC + 40779504 40779520 5.0E-06 GGGTAGGGGTCAGGGGA 17 V_FRA1_Q5_M01267 TRANSFAC + 40779484 40779491 1.0E-05 TGAGTCAT 8 V_NRF2_Q4_M00821 TRANSFAC + 40779480 40779492 1.0E-06 CTCCTGAGTCATG 13 V_SPIC_02_M02077 TRANSFAC - 40778330 40778339 1.0E-06 AGAGGAAGTA 10 V_SPIC_02_M02077 TRANSFAC - 40783502 40783511 3.0E-06 TGAGGAAGTT 10 V_TBP_04_M02918 TRANSFAC + 40782183 40782197 2.0E-06 CCCTTTTAAGAGGCC 15 V_T3RBETA_Q6_01_M02119 TRANSFAC + 40779538 40779554 3.0E-06 AGGGCACACAAGGACAG 17 V_T3RBETA_Q6_01_M02119 TRANSFAC - 40782671 40782687 0.0E+00 AGGCCACCTGAGGACAG 17 V_ETS1_B_M00339 TRANSFAC - 40778325 40778339 7.0E-06 AGAGGAAGTAGGAGC 15 V_ZFP281_01_M01597 TRANSFAC + 40780699 40780709 4.0E-06 GGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 40781181 40781191 1.0E-06 TGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 40783485 40783495 1.0E-05 TGGGGGAGGTG 11 V_SOX14_04_M02901 TRANSFAC - 40779551 40779567 9.0E-06 ATGTTGGGTGGGGCTGT 17 V_SOX2_01_M02246 TRANSFAC - 40781095 40781109 1.0E-06 CGTTTGTTCTGCAAA 15 V_ZFP281_04_M02831 TRANSFAC + 40781179 40781193 4.0E-06 GTCCCCACCCCCACC 15 V_ZFP281_04_M02831 TRANSFAC + 40783483 40783497 5.0E-06 TGCACCTCCCCCACC 15 V_HFH3_01_M00289 TRANSFAC + 40784731 40784743 9.0E-06 AGTTGTTTGTTTC 13 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 40782281 40782288 1.0E-05 TGTGGTTT 8 V_PLAGL1_03_M02786 TRANSFAC + 40779433 40779448 8.0E-06 TTGGGGGCCCCCTGGG 16 V_EKLF_Q5_M01874 TRANSFAC + 40782284 40782293 5.0E-06 CCACACCCAG 10 V_YY1_01_M00059 TRANSFAC + 40784754 40784770 7.0E-06 TCTCTCCATCTTTTGTG 17 V_HNF3B_Q6_M02014 TRANSFAC + 40784733 40784741 1.0E-05 TTGTTTGTT 9 V_CTF1_01_M01196 TRANSFAC - 40778691 40778704 1.0E-06 TGGCATAAAGCCAA 14 V_CTF1_01_M01196 TRANSFAC + 40778692 40778705 9.0E-06 TGGCTTTATGCCAG 14 V_SP1_Q2_01_M00933 TRANSFAC - 40782993 40783002 4.0E-06 CCCCGCCCCC 10 V_ARP1_01_M00155 TRANSFAC - 40778299 40778314 6.0E-06 CCAGCCTCTGAGCCTT 16 V_UF1H3BETA_Q6_M01068 TRANSFAC - 40781180 40781193 0.0E+00 GGTGGGGGTGGGGA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 40783484 40783497 1.0E-06 GGTGGGGGAGGTGC 14 V_SP1_Q4_01_M00932 TRANSFAC + 40782992 40783004 2.0E-06 GGGGGGCGGGGCG 13 V_TAACC_B_M00331 TRANSFAC + 40778666 40778688 8.0E-06 AGATGAGAAACCAAAGCCCAAAG 23 V_SOX5_04_M02910 TRANSFAC - 40779463 40779477 1.0E-06 AAACATCATTTAGCT 15 V_RNF96_01_M01199 TRANSFAC + 40782329 40782338 7.0E-06 GCCCGCAGCC 10 TLX1_NFIC_MA0119.1 JASPAR - 40778691 40778704 1.0E-06 TGGCATAAAGCCAA 14 TLX1_NFIC_MA0119.1 JASPAR + 40778692 40778705 9.0E-06 TGGCTTTATGCCAG 14 V_SPI1_02_M02043 TRANSFAC - 40778330 40778339 1.0E-06 AGAGGAAGTA 10 V_SPIB_03_M02076 TRANSFAC - 40778330 40778339 1.0E-06 AGAGGAAGTA 10 V_SPIB_03_M02076 TRANSFAC - 40783502 40783511 2.0E-06 TGAGGAAGTT 10 V_NF1_Q6_M00193 TRANSFAC + 40778689 40778706 1.0E-05 ATTTGGCTTTATGCCAGA 18 V_TR4_03_M01782 TRANSFAC + 40782088 40782100 9.0E-06 AGGTCACAAGTCA 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.