Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CMPK2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 129607 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial chr2 - 7005450 - 7010950 7005950 Transcription Factor Binding Sites   Download all TFBS in the CMPK2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 7006673 7006692 9.0E-06 TTCACCTTAGTGCAGGAAAC 20 NF-kappaB_MA0061.1 JASPAR + 7004189 7004198 2.0E-06 GGGAATTCCC 10 NF-kappaB_MA0061.1 JASPAR - 7004189 7004198 2.0E-06 GGGAATTCCC 10 EBF1_EBF_full_dimeric_14_1 SELEX + 7004181 7004194 9.0E-06 GTCCCCCTGGGAAT 14 EWSR1-FLI1_MA0149.1 JASPAR - 7006007 7006024 5.0E-06 GGAGGAGAGGCCGGAAGG 18 STAT1_MA0137.2 JASPAR - 7006575 7006589 7.0E-06 CAATTCCAAGAAGAG 15 IRF5_IRF_full_monomeric_11_1 SELEX + 7005899 7005909 8.0E-06 AAACGAAACCC 11 IRF1_MA0050.1 JASPAR + 7005863 7005874 7.0E-06 GGAAACGAAACC 12 IRF1_MA0050.1 JASPAR + 7005897 7005908 7.0E-06 GGAAACGAAACC 12 SP1_MA0079.2 JASPAR - 7006263 7006272 7.0E-06 CCCCGCCCCC 10 RFX4_RFX_DBD_dimeric_15_1 SELEX + 7005947 7005961 6.0E-06 CGTTGCGGGGAAACG 15 TEAD1_TEA_full_dimeric_17_1 SELEX - 7003840 7003856 8.0E-06 AAATACTCTGAATTCCC 17 IRF4_IRF_full_dimeric_15_1 SELEX + 7005861 7005875 8.0E-06 TCGGAAACGAAACCT 15 IRF3_IRF_full_trimeric_21_1 SELEX + 7005929 7005949 2.0E-06 CGGGAAACGAAAGCGAAGCGT 21 IRF2_MA0051.1 JASPAR + 7005930 7005947 5.0E-06 GGGAAACGAAAGCGAAGC 18 Zfx_MA0146.1 JASPAR - 7005969 7005982 8.0E-06 CCCGCCTGGGCCTC 14 V_NFKAPPAB65_01_M00052 TRANSFAC + 7004189 7004198 1.0E-05 GGGAATTCCC 10 V_NFKAPPAB65_01_M00052 TRANSFAC - 7004189 7004198 1.0E-05 GGGAATTCCC 10 V_NFKB_C_M00208 TRANSFAC + 7004188 7004199 4.0E-06 TGGGAATTCCCA 12 V_NFKB_C_M00208 TRANSFAC - 7004188 7004199 4.0E-06 TGGGAATTCCCA 12 V_SPI1_01_M01203 TRANSFAC - 7004195 7004211 7.0E-06 ACATTGAGGAACTGGGA 17 V_STAT5A_Q6_M01890 TRANSFAC + 7006574 7006586 9.0E-06 CCTCTTCTTGGAA 13 V_NFKB_Q6_01_M00774 TRANSFAC + 7004184 7004199 4.0E-06 CCCCTGGGAATTCCCA 16 V_NFKB_Q6_01_M00774 TRANSFAC - 7004188 7004203 2.0E-06 GAACTGGGAATTCCCA 16 V_TBX15_01_M01263 TRANSFAC + 7006693 7006711 6.0E-06 GTGTGTCAGGATAGCACCC 19 V_NRSF_Q4_M01028 TRANSFAC - 7004068 7004086 6.0E-06 CTCCAGCCCACTGTGCAGC 19 V_NRSF_Q4_M01028 TRANSFAC - 7005377 7005395 8.0E-06 GCGCTGCTCGAGCTGCTGG 19 V_NRSF_Q4_M01028 TRANSFAC + 7006589 7006607 5.0E-06 GCCCTCTCCCTTTTGCTGA 19 V_NKX29_01_M01352 TRANSFAC + 7004289 7004305 4.0E-06 TTCTAAGTGCTTTACAA 17 V_HOXA13_02_M01297 TRANSFAC - 7003879 7003887 1.0E-06 AAATAAAAC 9 V_IRF2_Q6_M01882 TRANSFAC + 7005929 7005944 8.0E-06 CGGGAAACGAAAGCGA 16 V_NKX25_Q6_M02108 TRANSFAC + 7006327 7006337 7.0E-06 CCCACTTGCAG 11 V_AP2_Q6_01_M00915 TRANSFAC + 7006114 7006126 2.0E-06 CGGTCCCCAGGCG 13 V_IRF3_05_M02767 TRANSFAC + 7005862 7005875 4.0E-06 CGGAAACGAAACCT 14 V_IRF3_05_M02767 TRANSFAC + 7005896 7005909 4.0E-06 GGGAAACGAAACCC 14 V_SP1_03_M02281 TRANSFAC - 7006263 7006272 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC - 7006422 7006432 8.0E-06 GGGGCGGGGAC 11 V_AP4_Q6_02_M01860 TRANSFAC - 7005306 7005318 8.0E-06 CCAGCTGTGGCAG 13 V_COUPTF_Q6_M01036 TRANSFAC - 7005397 7005419 9.0E-06 CTGGATGACCCTGACACCCGGCA 23 V_AP4_Q6_01_M00927 TRANSFAC - 7005521 7005529 6.0E-06 ACCAGCTGC 9 V_BARBIE_01_M00238 TRANSFAC + 7005958 7005972 5.0E-06 AACGAAAGCCGGAGG 15 V_NRSE_B_M00325 TRANSFAC + 7004232 7004252 7.0E-06 CACAGCATCTCAGAGCGAGGC 21 V_ELF4_04_M02850 TRANSFAC - 7003875 7003891 6.0E-06 TATAAAATAAAACACTC 17 V_ELF4_04_M02850 TRANSFAC - 7003877 7003893 5.0E-06 AATATAAAATAAAACAC 17 V_ELF4_04_M02850 TRANSFAC - 7003881 7003897 1.0E-05 GCTCAATATAAAATAAA 17 V_ZNF219_01_M01122 TRANSFAC - 7006258 7006269 1.0E-05 CGCCCCCCTCCA 12 V_CART1_01_M00416 TRANSFAC - 7004203 7004220 1.0E-05 AGATAATGCACATTGAGG 18 V_POLY_C_M00212 TRANSFAC - 7003870 7003887 8.0E-06 AAATAAAACACTCCAGTC 18 V_HIC1_03_M01073 TRANSFAC + 7006268 7006285 8.0E-06 CGGGGGTGCACGCGCGAG 18 V_IRX4_01_M01410 TRANSFAC - 7004296 7004312 4.0E-06 TGAATACTTGTAAAGCA 17 V_SP1_Q6_M00196 TRANSFAC + 7006262 7006274 4.0E-06 GGGGGGCGGGGGT 13 V_AP2BETA_Q3_M01858 TRANSFAC - 7006099 7006114 9.0E-06 GCGCAGGCCCGCGGAG 16 V_IRF_Q6_M00772 TRANSFAC - 7005931 7005945 5.0E-06 TTCGCTTTCGTTTCC 15 V_MATH1_Q2_M01716 TRANSFAC + 7005521 7005530 3.0E-06 GCAGCTGGTG 10 V_ISRE_01_M00258 TRANSFAC - 7005895 7005909 5.0E-06 GGGTTTCGTTTCCCG 15 V_NFKAPPAB50_01_M00051 TRANSFAC + 7004189 7004198 6.0E-06 GGGAATTCCC 10 V_NFKAPPAB50_01_M00051 TRANSFAC - 7004189 7004198 6.0E-06 GGGAATTCCC 10 V_ISGF3G_03_M02771 TRANSFAC + 7005862 7005876 9.0E-06 CGGAAACGAAACCTG 15 V_ISGF3G_03_M02771 TRANSFAC + 7005930 7005944 9.0E-06 GGGAAACGAAAGCGA 15 V_TBP_06_M02814 TRANSFAC + 7003880 7003895 5.0E-06 TTTTATTTTATATTGA 16 V_TBP_06_M02814 TRANSFAC - 7003880 7003895 3.0E-06 TCAATATAAAATAAAA 16 V_IK3_01_M00088 TRANSFAC - 7004190 7004202 5.0E-06 AACTGGGAATTCC 13 V_OCT4_02_M01124 TRANSFAC + 7004308 7004322 5.0E-06 ATTCAGTTGCCAATC 15 V_NKX23_01_M01457 TRANSFAC + 7004289 7004304 4.0E-06 TTCTAAGTGCTTTACA 16 V_NKX23_01_M01457 TRANSFAC - 7004289 7004304 3.0E-06 TGTAAAGCACTTAGAA 16 V_ICSBP_Q6_M00699 TRANSFAC + 7005932 7005943 7.0E-06 GAAACGAAAGCG 12 V_SP4_Q5_M01273 TRANSFAC - 7006263 7006273 5.0E-06 CCCCCGCCCCC 11 V_IRX3_02_M01485 TRANSFAC - 7004296 7004312 7.0E-06 TGAATACTTGTAAAGCA 17 V_ZIC2_05_M02940 TRANSFAC + 7005424 7005438 4.0E-06 TCGCGCAGCAGGAAG 15 V_MTF1_06_M02882 TRANSFAC - 7003879 7003892 2.0E-06 ATATAAAATAAAAC 14 V_MTF1_06_M02882 TRANSFAC - 7003881 7003894 1.0E-06 CAATATAAAATAAA 14 V_FOXL1_02_M02857 TRANSFAC - 7003878 7003893 0.0E+00 AATATAAAATAAAACA 16 V_NKX3A_02_M01383 TRANSFAC - 7004288 7004304 1.0E-06 TGTAAAGCACTTAGAAG 17 V_NKX3A_02_M01383 TRANSFAC + 7004289 7004305 2.0E-06 TTCTAAGTGCTTTACAA 17 V_NFKAPPAB_01_M00054 TRANSFAC + 7004189 7004198 2.0E-06 GGGAATTCCC 10 V_NFKAPPAB_01_M00054 TRANSFAC - 7004189 7004198 2.0E-06 GGGAATTCCC 10 V_SRF_06_M02916 TRANSFAC - 7003876 7003892 6.0E-06 ATATAAAATAAAACACT 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 7006007 7006024 5.0E-06 GGAGGAGAGGCCGGAAGG 18 V_SP1_Q2_01_M00933 TRANSFAC - 7006263 7006272 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 7006424 7006433 7.0E-06 CCCCGCCCCT 10 V_PAX4_04_M00380 TRANSFAC - 7003864 7003893 7.0E-06 AATATAAAATAAAACACTCCAGTCCATCCT 30 V_ZIC1_05_M02939 TRANSFAC + 7005424 7005438 4.0E-06 TCGCGCAGCAGGAAG 15 V_AP2_Q3_M00800 TRANSFAC + 7005809 7005824 5.0E-06 GCCGGCGGGCGAAGGC 16 V_NKX21_01_M01312 TRANSFAC - 7006685 7006700 8.0E-06 TGACACACTTCACCTT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.