Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TYW5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 129450 tRNA-yW synthesizing protein 5 chr2 - 200819959 - 200825459 200820459 Transcription Factor Binding Sites   Download all TFBS in the TYW5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 200820513 200820521 9.0E-06 GTCATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 200820513 200820522 2.0E-06 GTCATAAAAA 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX + 200820513 200820522 5.0E-06 GTCATAAAAA 10 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX + 200820512 200820523 0.0E+00 GGTCATAAAAAT 12 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 200816023 200816039 0.0E+00 ACAAAAAACTGAAAACA 17 ZNF232_C2H2_full_monomeric_19_1 SELEX + 200815983 200816001 0.0E+00 ACGTTAAATGAGGACTTAC 19 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX + 200820513 200820522 2.0E-06 GTCATAAAAA 10 HOXC11_homeodomain_full_monomeric_11_1 SELEX + 200820512 200820522 3.0E-06 GGTCATAAAAA 11 SCRT2_C2H2_DBD_monomeric_13_1 SELEX + 200820408 200820420 8.0E-06 CAGCAACAGGTCC 13 IRF1_MA0050.1 JASPAR - 200816024 200816035 5.0E-06 AAAACTGAAAAC 12 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX + 200820513 200820522 0.0E+00 GTCATAAAAA 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 200820512 200820521 3.0E-06 GGTCATAAAA 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 200820513 200820521 9.0E-06 GTCATAAAA 9 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 200820513 200820522 9.0E-06 GTCATAAAAA 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 200820512 200820522 1.0E-06 GGTCATAAAAA 11 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX + 200820512 200820522 1.0E-06 GGTCATAAAAA 11 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 200815992 200816008 9.0E-06 TAGTACAGTAAGTCCTC 17 TFCP2_CP2_full_dimeric_10_1 SELEX + 200820035 200820044 6.0E-06 AAACCAGTTC 10 YY2_C2H2_full_monomeric_11_1 SELEX + 200819879 200819889 9.0E-06 TCCGCCATCAT 11 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX + 200820512 200820523 0.0E+00 GGTCATAAAAAT 12 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX + 200820513 200820522 1.0E-06 GTCATAAAAA 10 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX + 200820513 200820521 7.0E-06 GTCATAAAA 9 ZNF410_C2H2_DBD_monomeric_17_1 SELEX + 200818633 200818649 9.0E-06 CACATACCCTAATCTTC 17 HOXD12_homeodomain_DBD_monomeric_11_1 SELEX + 200820512 200820522 3.0E-06 GGTCATAAAAA 11 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 200820512 200820522 1.0E-06 GGTCATAAAAA 11 HOXC12_homeodomain_DBD_monomeric_11_1 SELEX + 200820512 200820522 3.0E-06 GGTCATAAAAA 11 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 200820513 200820521 6.0E-06 GTCATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX + 200820513 200820521 6.0E-06 GTCATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 200820512 200820522 1.0E-06 GGTCATAAAAA 11 Zfx_MA0146.1 JASPAR + 200820348 200820361 7.0E-06 AGGGCCTCGGCCTG 14 V_HOXA9_01_M01351 TRANSFAC + 200820510 200820526 3.0E-06 AGGGTCATAAAAATGGC 17 V_FOXP1_01_M00987 TRANSFAC + 200816022 200816041 2.0E-06 TTGTTTTCAGTTTTTTGTGT 20 V_GEN_INI_B_M00315 TRANSFAC - 200815988 200815995 1.0E-05 CCTCATTT 8 V_BCL6_Q3_01_M02085 TRANSFAC + 200815963 200815972 7.0E-06 CTTCCAAGAA 10 V_CDX2_Q5_01_M01659 TRANSFAC + 200820513 200820523 1.0E-05 GTCATAAAAAT 11 V_GATA1_Q6_M02004 TRANSFAC - 200820906 200820920 9.0E-06 GGCCCAGATAAGGAA 15 V_ZFX_01_M01593 TRANSFAC - 200820349 200820364 1.0E-06 GCCCAGGCCGAGGCCC 16 V_HMGIY_Q3_M01010 TRANSFAC + 200816025 200816039 7.0E-06 TTTTCAGTTTTTTGT 15 V_BCL6_01_M01183 TRANSFAC - 200818623 200818638 9.0E-06 TATGTGGAAGTGCTTT 16 V_SP100_03_M02809 TRANSFAC + 200819913 200819926 5.0E-06 TTTCTCCGGAAATT 14 V_ISL2_01_M01328 TRANSFAC - 200819709 200819724 6.0E-06 CTAACTTACTTAGGTT 16 V_IRF_Q6_01_M00972 TRANSFAC - 200816025 200816035 1.0E-06 AAAACTGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC - 200816022 200816037 1.0E-06 AAAAAACTGAAAACAA 16 V_GATA1_03_M00127 TRANSFAC - 200818638 200818651 8.0E-06 GTGAAGATTAGGGT 14 V_FOXO3A_Q1_M01137 TRANSFAC - 200816019 200816030 5.0E-06 TGAAAACAAACT 12 V_MAF_Q6_M00648 TRANSFAC - 200818650 200818665 7.0E-06 TAAAGGGCAGTGTTGT 16 V_STAT6_01_M00494 TRANSFAC + 200820679 200820686 7.0E-06 TATTTCCA 8 V_PRX2_Q2_M02115 TRANSFAC + 200821122 200821130 7.0E-06 TTAAAGTAA 9 V_HOXC13_01_M01317 TRANSFAC + 200820509 200820524 2.0E-06 AAGGGTCATAAAAATG 16 V_ETV7_01_M02071 TRANSFAC + 200820263 200820272 3.0E-06 CCCGGAAACA 10 V_GEN_INI3_B_M00314 TRANSFAC - 200815988 200815995 1.0E-05 CCTCATTT 8 V_FOXO1_02_M00474 TRANSFAC + 200816019 200816032 9.0E-06 AGTTTGTTTTCAGT 14 V_HOXD12_01_M01380 TRANSFAC + 200820509 200820525 6.0E-06 AAGGGTCATAAAAATGG 17 V_IRF4_04_M02872 TRANSFAC + 200820556 200820570 6.0E-06 TGCACTCTCGGTCGC 15 V_NFKB_Q6_M00194 TRANSFAC + 200819906 200819919 9.0E-06 ATGGGACTTTCTCC 14 V_HOXB9_01_M01426 TRANSFAC + 200820510 200820525 1.0E-06 AGGGTCATAAAAATGG 16 V_CDX2_01_M01449 TRANSFAC + 200820509 200820524 0.0E+00 AAGGGTCATAAAAATG 16 V_IRF_Q6_M00772 TRANSFAC + 200816021 200816035 0.0E+00 TTTGTTTTCAGTTTT 15 V_CDX2_Q5_M00729 TRANSFAC - 200820512 200820525 2.0E-06 CCATTTTTATGACC 14 V_HOXC11_01_M01329 TRANSFAC + 200820509 200820524 2.0E-06 AAGGGTCATAAAAATG 16 V_HOXD11_01_M01434 TRANSFAC + 200820509 200820525 3.0E-06 AAGGGTCATAAAAATGG 17 V_XBP1_02_M01770 TRANSFAC - 200820065 200820075 6.0E-06 AGAGACACGTC 11 V_CDX1_01_M01373 TRANSFAC + 200820509 200820524 0.0E+00 AAGGGTCATAAAAATG 16 V_HOXC12_01_M01437 TRANSFAC + 200820509 200820525 2.0E-06 AAGGGTCATAAAAATGG 17 V_NFKAPPAB50_01_M00051 TRANSFAC - 200820758 200820767 8.0E-06 GGGGAGTCCC 10 V_HOXA11_01_M01378 TRANSFAC + 200820509 200820524 2.0E-06 AAGGGTCATAAAAATG 16 V_AP1_Q2_01_M00924 TRANSFAC + 200821118 200821129 7.0E-06 TGACTTAAAGTA 12 V_FOXO1_Q5_M01216 TRANSFAC - 200816021 200816029 5.0E-06 GAAAACAAA 9 V_PTF1BETA_Q6_M00657 TRANSFAC + 200820282 200820295 2.0E-06 GAGAAAAGGTCCGC 14 V_YY1_03_M02044 TRANSFAC - 200820518 200820529 7.0E-06 AGCGCCATTTTT 12 V_TAL1_01_M01591 TRANSFAC + 200820905 200820917 1.0E-06 CTTCCTTATCTGG 13 V_CEBPA_01_M00116 TRANSFAC - 200819847 200819860 8.0E-06 ATTTTGCCTAAACT 14 V_FOXL1_04_M02753 TRANSFAC - 200816018 200816034 9.0E-06 AAACTGAAAACAAACTG 17 V_T3R_Q6_M00963 TRANSFAC - 200818706 200818714 7.0E-06 CCTGTCCTT 9 V_GEN_INI2_B_M00313 TRANSFAC - 200815988 200815995 1.0E-05 CCTCATTT 8 V_GATA3_01_M00077 TRANSFAC + 200818690 200818698 4.0E-06 GAGATAGGG 9 V_STAT1STAT1_Q3_M01212 TRANSFAC + 200820680 200820692 8.0E-06 ATTTCCACGAAGC 13 V_IRF6_04_M02874 TRANSFAC + 200820556 200820570 1.0E-06 TGCACTCTCGGTCGC 15 V_LMO2COM_02_M00278 TRANSFAC - 200820908 200820916 3.0E-06 CAGATAAGG 9 V_OCT1_07_M00248 TRANSFAC - 200819923 200819934 3.0E-06 TCTATTGAAATT 12 V_IRF1_Q6_01_M01881 TRANSFAC + 200816023 200816036 1.0E-06 TGTTTTCAGTTTTT 14 V_SRF_02_M01257 TRANSFAC - 200820902 200820919 4.0E-06 GCCCAGATAAGGAAGGCC 18 V_EKLF_Q5_M01874 TRANSFAC + 200820016 200820025 2.0E-06 CCACACCCTG 10 V_HOXC10_01_M01361 TRANSFAC + 200820509 200820524 1.0E-06 AAGGGTCATAAAAATG 16 V_HOXD10_01_M01375 TRANSFAC + 200820510 200820526 9.0E-06 AGGGTCATAAAAATGGC 17 V_FOXK1_03_M02752 TRANSFAC - 200816018 200816034 9.0E-06 AAACTGAAAACAAACTG 17 V_HOXC9_01_M01416 TRANSFAC + 200820509 200820524 3.0E-06 AAGGGTCATAAAAATG 16 V_PPARG_01_M00512 TRANSFAC + 200820500 200820520 9.0E-06 ACCGGTGTGAAGGGTCATAAA 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.