Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C20orf144 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 128864 chr20 + 32245091 - 32255091 0 Transcription Factor Binding Sites   Download all TFBS in the C20orf144 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_15_3 SELEX - 32252911 32252925 9.0E-06 CTGAATCACAGTCCT 15 SPIC_ETS_full_monomeric_14_1 SELEX + 32254741 32254754 5.0E-06 CAGAAGAGGAAGAA 14 FLI1_ETS_full_monomeric_10_1 SELEX - 32251581 32251590 1.0E-05 ACCGGAAGCG 10 ERG_ETS_full_monomeric_10_1 SELEX - 32251581 32251590 8.0E-06 ACCGGAAGCG 10 SOX8_HMG_full_dimeric_17_1 SELEX - 32254148 32254164 6.0E-06 AGCCAAGGGCAGTGATT 17 SOX2_HMG_full_dimeric_15_1 SELEX - 32252911 32252925 8.0E-06 CTGAATCACAGTCCT 15 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX + 32254239 32254255 7.0E-06 AGGTCACAATGAGCCCA 17 SP1_MA0079.2 JASPAR + 32252900 32252909 3.0E-06 CCCCTCCCCC 10 Gfi_MA0038.1 JASPAR + 32254146 32254155 3.0E-06 AAAATCACTG 10 ELK4_ETS_DBD_monomeric_10_1 SELEX - 32251581 32251590 1.0E-05 ACCGGAAGCG 10 SP4_C2H2_full_monomeric_17_1 SELEX - 32251533 32251549 2.0E-06 CTGGCCCCGCCCTCTTC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 32254677 32254693 6.0E-06 AAAGCCCCGCCTCTTCT 17 ESR1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 32254238 32254254 2.0E-06 GAGGTCACAATGAGCCC 17 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 32251694 32251703 7.0E-06 CCAATAAAGA 10 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 32251686 32251700 9.0E-06 GACCCCGCCCAATAA 15 Myf_MA0055.1 JASPAR - 32251497 32251508 4.0E-06 CAGCAGCAGCAG 12 V_SAP1A_01_M01167 TRANSFAC - 32252031 32252041 9.0E-06 TACCGGAAGCA 11 V_KLF15_Q2_M01714 TRANSFAC - 32251315 32251328 9.0E-06 GAACAGGGGCGTGA 14 V_TGIF_01_M00418 TRANSFAC + 32254193 32254203 3.0E-06 AGTTGTCATAA 11 V_ELK1_04_M01165 TRANSFAC - 32251581 32251591 4.0E-06 GACCGGAAGCG 11 V_ELK1_04_M01165 TRANSFAC - 32252031 32252041 4.0E-06 TACCGGAAGCA 11 V_FLI1_Q6_M01208 TRANSFAC + 32251081 32251091 3.0E-06 CAGGAAGTCAG 11 V_FLI1_Q6_M01208 TRANSFAC - 32251951 32251961 4.0E-06 CAGGATGTGAC 11 V_PAX4_03_M00378 TRANSFAC - 32254724 32254735 2.0E-06 AATCACCACCCT 12 V_RORA1_01_M00156 TRANSFAC + 32251943 32251955 6.0E-06 AAATCCAGGTCAC 13 V_ETV3_01_M01990 TRANSFAC - 32251581 32251590 9.0E-06 ACCGGAAGCG 10 V_GABP_B_M00341 TRANSFAC - 32251579 32251590 2.0E-06 ACCGGAAGCGCG 12 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 32251765 32251777 5.0E-06 CTGAGCTTTGCCC 13 V_AP2_Q6_01_M00915 TRANSFAC + 32254621 32254633 9.0E-06 CGGGCCTCAGGCC 13 V_SP1_03_M02281 TRANSFAC + 32252900 32252909 3.0E-06 CCCCTCCCCC 10 V_HEN1_01_M00068 TRANSFAC + 32255034 32255055 2.0E-06 TTGGTGCCCAGCTGGGACCGGC 22 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC - 32252902 32252917 4.0E-06 CAGTCCTAGGGGGAGG 16 V_HOXA13_03_M01430 TRANSFAC + 32251051 32251066 6.0E-06 GGATCTCATAAACTTA 16 V_HOXC13_01_M01317 TRANSFAC + 32251051 32251066 4.0E-06 GGATCTCATAAACTTA 16 V_GC_01_M00255 TRANSFAC - 32252897 32252910 1.0E-06 AGGGGGAGGGGCTG 14 V_GC_01_M00255 TRANSFAC - 32254282 32254295 6.0E-06 GAGGGGAGGGGCTG 14 V_GC_01_M00255 TRANSFAC + 32254679 32254692 0.0E+00 AAGAGGCGGGGCTT 14 V_PR_Q2_M00960 TRANSFAC + 32252120 32252129 9.0E-06 GTAAGAACAG 10 V_MYF_01_M01302 TRANSFAC - 32251497 32251508 4.0E-06 CAGCAGCAGCAG 12 V_FKLF_Q5_M01837 TRANSFAC + 32251009 32251018 2.0E-06 GGGGTGGGAG 10 V_GFI1_01_M00250 TRANSFAC + 32254140 32254163 8.0E-06 GATGCCAAAATCACTGCCCTTGGC 24 V_HNF4_01_B_M00411 TRANSFAC + 32251763 32251777 7.0E-06 GTGGGCAAAGCTCAG 15 V_DOBOX4_01_M01359 TRANSFAC - 32254357 32254373 3.0E-06 GACATATATCCCCCTTG 17 V_ER81_02_M02065 TRANSFAC - 32251581 32251590 8.0E-06 ACCGGAAGCG 10 V_SP1_Q6_M00196 TRANSFAC + 32251535 32251547 4.0E-06 AGAGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 32252898 32252910 3.0E-06 AGGGGGAGGGGCT 13 V_EGR1_04_M02848 TRANSFAC + 32250827 32250842 4.0E-06 GCATGAGTGGGATTCT 16 V_ASCL2_03_M02737 TRANSFAC - 32254217 32254233 9.0E-06 CCCAGCAGCTGCACTTC 17 V_GADP_01_M01258 TRANSFAC + 32251581 32251592 7.0E-06 CGCTTCCGGTCC 12 V_REX1_03_M01744 TRANSFAC - 32254466 32254477 9.0E-06 GAGATGGCTGAC 12 V_SPIB_01_M01204 TRANSFAC + 32254741 32254757 5.0E-06 CAGAAGAGGAAGAACTT 17 V_ERALPHA_01_M01801 TRANSFAC + 32254239 32254253 1.0E-06 AGGTCACAATGAGCC 15 V_ERALPHA_01_M01801 TRANSFAC - 32254239 32254253 2.0E-06 GGCTCATTGTGACCT 15 V_KLF7_03_M02773 TRANSFAC - 32251534 32251549 5.0E-06 CTGGCCCCGCCCTCTT 16 V_KLF7_03_M02773 TRANSFAC + 32251684 32251699 6.0E-06 CGGACCCCGCCCAATA 16 V_HNF4_DR1_Q3_M00764 TRANSFAC - 32251764 32251776 6.0E-06 TGAGCTTTGCCCA 13 V_CTCF_01_M01200 TRANSFAC + 32251526 32251545 4.0E-06 GCGGCCGGAAGAGGGCGGGG 20 V_ELK1_01_M00007 TRANSFAC - 32251578 32251593 7.0E-06 GGGACCGGAAGCGCGA 16 V_CETS1P54_03_M01078 TRANSFAC - 32252028 32252043 0.0E+00 TTTACCGGAAGCAGGT 16 V_SP4_Q5_M01273 TRANSFAC + 32252899 32252909 5.0E-06 GCCCCTCCCCC 11 V_ELF1_Q6_M00746 TRANSFAC + 32254742 32254753 2.0E-06 AGAAGAGGAAGA 12 V_GFI1_Q6_M01067 TRANSFAC + 32254145 32254157 0.0E+00 CAAAATCACTGCC 13 V_ZFP187_04_M02934 TRANSFAC - 32254954 32254969 1.0E-06 GAGCCCTGGTCCACCA 16 V_T3R_01_M00239 TRANSFAC + 32254234 32254249 3.0E-06 GAGTGAGGTCACAATG 16 V_MYF6_04_M02885 TRANSFAC + 32254999 32255013 8.0E-06 AGAACCAGCCGCGCA 15 V_GFI1B_01_M01058 TRANSFAC + 32254146 32254157 9.0E-06 AAAATCACTGCC 12 V_FPM315_01_M01587 TRANSFAC - 32254926 32254937 6.0E-06 CAGGGAGGACGG 12 V_ZFP281_01_M01597 TRANSFAC - 32252900 32252910 3.0E-06 AGGGGGAGGGG 11 V_SAP1A_03_M02058 TRANSFAC - 32251581 32251590 7.0E-06 ACCGGAAGCG 10 V_LPOLYA_B_M00318 TRANSFAC + 32251695 32251702 7.0E-06 CAATAAAG 8 V_SP1_Q4_01_M00932 TRANSFAC + 32251535 32251547 1.0E-06 AGAGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 32252898 32252910 2.0E-06 AGGGGGAGGGGCT 13 V_SP1_Q4_01_M00932 TRANSFAC + 32254700 32254712 9.0E-06 AGAGGGCGGAGCC 13 V_ETV3_02_M02068 TRANSFAC - 32251581 32251590 9.0E-06 ACCGGAAGCG 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.