Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KLHDC7A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 127707 kelch domain containing 7A chr1 + 18802423 - 18807923 18807423 Transcription Factor Binding Sites   Download all TFBS in the KLHDC7A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 18807005 18807015 3.0E-06 CATGACTCACC 11 MYF6_bHLH_full_dimeric_10_1 SELEX + 18807913 18807922 1.0E-06 AACAGCTGTT 10 MYF6_bHLH_full_dimeric_10_1 SELEX - 18807913 18807922 1.0E-06 AACAGCTGTT 10 SPIC_ETS_full_monomeric_14_1 SELEX + 18807046 18807059 9.0E-06 CAAAAGAGAAAATA 14 SPIC_ETS_full_monomeric_14_1 SELEX - 18807128 18807141 5.0E-06 CAAAAGAGGAGGAA 14 ESR2_MA0258.1 JASPAR - 18812233 18812250 1.0E-05 AAGTGTCATCTTAAACTG 18 EWSR1-FLI1_MA0149.1 JASPAR + 18807250 18807267 4.0E-06 GGAAGCATGGAAGGAGGC 18 Tp73_p53l_DBD_dimeric_18_1 SELEX - 18807587 18807604 7.0E-06 GGCAGGCCTCGACTTGTA 18 Tcfcp2l1_MA0145.1 JASPAR + 18807355 18807368 3.0E-06 CCAGCCAGAACCAG 14 FIGLA_bHLH_DBD_dimeric_10_1 SELEX + 18807913 18807922 9.0E-06 AACAGCTGTT 10 FIGLA_bHLH_DBD_dimeric_10_1 SELEX - 18807913 18807922 9.0E-06 AACAGCTGTT 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 18807070 18807083 1.0E-06 ATAAAGAATAACCA 14 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 18807420 18807434 5.0E-06 GATTAATAATTGCCC 15 HIC2_C2H2_DBD_monomeric_9_1 SELEX + 18807143 18807151 4.0E-06 ATGCCCACT 9 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 18807913 18807922 3.0E-06 AACAGCTGTT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 18807913 18807922 3.0E-06 AACAGCTGTT 10 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 18807911 18807924 0.0E+00 AGAACAGCTGTTGG 14 Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 18807911 18807924 0.0E+00 CCAACAGCTGTTCT 14 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 18804561 18804576 8.0E-06 GAGGTCAGGAGTTCGA 16 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 18807061 18807075 4.0E-06 AGCACACACATAAAG 15 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 18807435 18807451 0.0E+00 AGATTCTTGACATTCCT 17 HNF1B_homeodomain_full_dimeric_13_1 SELEX + 18807421 18807433 4.0E-06 GGCAATTATTAAT 13 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 18807416 18807428 9.0E-06 TAATTGCCCAGTA 13 Stat3_MA0144.1 JASPAR - 18807094 18807103 7.0E-06 TGCCAGGAAA 10 FEV_MA0156.1 JASPAR - 18807093 18807100 1.0E-05 CAGGAAAT 8 JDP2_bZIP_full_dimeric_9_1 SELEX + 18807006 18807014 7.0E-06 ATGACTCAC 9 TFAP4_bHLH_full_dimeric_10_1 SELEX + 18807913 18807922 1.0E-06 AACAGCTGTT 10 TFAP4_bHLH_full_dimeric_10_1 SELEX - 18807913 18807922 1.0E-06 AACAGCTGTT 10 TEAD1_TEA_full_dimeric_17_1 SELEX + 18807435 18807451 0.0E+00 AGATTCTTGACATTCCT 17 GBX2_homeodomain_DBD_dimeric_14_1 SELEX + 18807415 18807428 9.0E-06 CTACTGGGCAATTA 14 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 18804561 18804575 2.0E-06 GAGGTCAGGAGTTCG 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 18807420 18807434 4.0E-06 GATTAATAATTGCCC 15 POU3F3_POU_DBD_dimeric_12_1 SELEX - 18806803 18806814 9.0E-06 TTTATTAAGAAA 12 MSC_bHLH_full_dimeric_10_1 SELEX + 18807913 18807922 1.0E-06 AACAGCTGTT 10 MSC_bHLH_full_dimeric_10_1 SELEX - 18807913 18807922 1.0E-06 AACAGCTGTT 10 HNF1A_MA0046.1 JASPAR - 18807421 18807434 2.0E-06 GATTAATAATTGCC 14 TEAD1_MA0090.1 JASPAR + 18807443 18807454 7.0E-06 GACATTCCTCAG 12 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 18807070 18807083 7.0E-06 ATAAAGAATAACCA 14 V_FOXP1_01_M00987 TRANSFAC - 18807054 18807073 0.0E+00 TTATGTGTGTGCTTTATTTT 20 V_STAT5A_Q6_M01890 TRANSFAC - 18806785 18806797 5.0E-06 GCCTTTCTGAGAA 13 V_DBX1_01_M01483 TRANSFAC - 18806801 18806817 1.0E-06 AAGTTTATTAAGAAAAA 17 V_DBX1_01_M01483 TRANSFAC - 18807423 18807439 5.0E-06 AATCTGATTAATAATTG 17 V_AML_Q6_M00769 TRANSFAC - 18807176 18807190 4.0E-06 AGCTCTGTGGTCAGC 15 V_BACH2_01_M00490 TRANSFAC - 18807005 18807015 3.0E-06 GGTGAGTCATG 11 TAL1_TCF3_MA0091.1 JASPAR + 18807911 18807922 2.0E-06 AGAACAGCTGTT 12 TAL1_TCF3_MA0091.1 JASPAR - 18807913 18807924 5.0E-06 CCAACAGCTGTT 12 V_COE1_Q6_M01871 TRANSFAC - 18807476 18807489 1.0E-05 CCTCTGGGGAACAT 14 V_IRF_Q6_01_M00972 TRANSFAC + 18807047 18807057 3.0E-06 AAAAGAGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC + 18807045 18807060 1.0E-06 GCAAAAGAGAAAATAA 16 V_CEBP_01_M00159 TRANSFAC + 18807113 18807125 4.0E-06 TGTTTGGTTAAGA 13 V_HNF3_Q6_01_M01012 TRANSFAC - 18807047 18807064 4.0E-06 TGCTTTATTTTCTCTTTT 18 V_NKX61_03_M01489 TRANSFAC - 18807418 18807434 9.0E-06 GATTAATAATTGCCCAG 17 V_HOXC6_01_M01406 TRANSFAC - 18806802 18806818 1.0E-06 CAAGTTTATTAAGAAAA 17 V_LHX3_01_M01471 TRANSFAC + 18807425 18807441 9.0E-06 ATTATTAATCAGATTCT 17 V_SP1_02_M01303 TRANSFAC - 18807230 18807240 5.0E-06 GGGGTGGGGGG 11 V_AP4_Q6_02_M01860 TRANSFAC + 18807914 18807926 1.0E-06 ACAGCTGTTGGCA 13 V_HNF4A_04_M02764 TRANSFAC - 18806929 18806945 8.0E-06 ACAGTGGGGTCAACTTT 17 V_GM497_04_M02864 TRANSFAC + 18807058 18807073 2.0E-06 TAAAGCACACACATAA 16 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 18804560 18804574 6.0E-06 CGAGGTCAGGAGTTC 15 V_PPARGRXRA_01_M02262 TRANSFAC - 18807324 18807338 6.0E-06 GAGGAGCAAAGGTGA 15 V_RPC155_01_M01798 TRANSFAC + 18804565 18804580 0.0E+00 TCAGGAGTTCGAAACC 16 V_ETS_Q4_M00771 TRANSFAC + 18807089 18807100 9.0E-06 ATGCATTTCCTG 12 V_CP2_02_M00947 TRANSFAC - 18807355 18807369 1.0E-06 GCTGGTTCTGGCTGG 15 V_TRF1_01_M01237 TRANSFAC - 18807928 18807942 1.0E-06 GGAGGGTCAGGGTTA 15 V_BACH1_01_M00495 TRANSFAC - 18807003 18807017 2.0E-06 GTGGTGAGTCATGGG 15 V_CRX_Q4_M00623 TRANSFAC + 18807426 18807438 3.0E-06 TTATTAATCAGAT 13 V_HNF1_Q6_M00790 TRANSFAC - 18807066 18807083 1.0E-05 TGGTTATTCTTTATGTGT 18 V_HNF1_Q6_M00790 TRANSFAC - 18807418 18807435 8.0E-06 TGATTAATAATTGCCCAG 18 V_P53_03_M01651 TRANSFAC + 18807586 18807605 4.0E-06 GTACAAGTCGAGGCCTGCCC 20 V_P53_03_M01651 TRANSFAC - 18807586 18807605 4.0E-06 GGGCAGGCCTCGACTTGTAC 20 V_MAZ_Q6_01_M02023 TRANSFAC - 18807378 18807391 1.0E-06 AGCGGAGGGGAGGG 14 V_IRF_Q6_M00772 TRANSFAC - 18807047 18807061 0.0E+00 TTTATTTTCTCTTTT 15 V_HNF1_Q6_01_M01011 TRANSFAC + 18807417 18807437 4.0E-06 ACTGGGCAATTATTAATCAGA 21 V_ISRE_01_M00258 TRANSFAC - 18807045 18807059 9.0E-06 TATTTTCTCTTTTGC 15 V_AP4_Q5_M00175 TRANSFAC + 18807913 18807922 9.0E-06 AACAGCTGTT 10 V_AP4_Q5_M00175 TRANSFAC - 18807913 18807922 9.0E-06 AACAGCTGTT 10 V_PPARG_03_M00528 TRANSFAC - 18807324 18807340 9.0E-06 GAGAGGAGCAAAGGTGA 17 V_SOX12_04_M02900 TRANSFAC + 18807064 18807079 1.0E-06 ACACACATAAAGAATA 16 V_PEBP_Q6_M00984 TRANSFAC + 18807176 18807190 0.0E+00 GCTGACCACAGAGCT 15 V_ERALPHA_01_M01801 TRANSFAC + 18807315 18807329 7.0E-06 AGCTCAAAGTCACCT 15 V_ERALPHA_01_M01801 TRANSFAC - 18807315 18807329 6.0E-06 AGGTGACTTTGAGCT 15 V_TEF_01_M01305 TRANSFAC + 18807443 18807454 7.0E-06 GACATTCCTCAG 12 V_HB24_01_M01399 TRANSFAC + 18807423 18807437 1.0E-05 CAATTATTAATCAGA 15 V_MAFK_Q3_M02022 TRANSFAC + 18807007 18807017 8.0E-06 TGACTCACCAC 11 V_STAT4_Q5_M02117 TRANSFAC + 18806785 18806794 9.0E-06 TTCTCAGAAA 10 V_PROP1_02_M01320 TRANSFAC - 18806802 18806818 9.0E-06 CAAGTTTATTAAGAAAA 17 V_STAT3_03_M01595 TRANSFAC - 18807090 18807105 8.0E-06 GATGCCAGGAAATGCA 16 V_AP1_Q4_01_M00926 TRANSFAC - 18807006 18807013 1.0E-05 TGAGTCAT 8 V_ELK1_01_M00007 TRANSFAC + 18802822 18802837 7.0E-06 GTCGCAGGAAGTGCCA 16 V_MAF_Q6_01_M00983 TRANSFAC - 18807006 18807016 8.0E-06 TGGTGAGTCAT 11 V_MYOD_01_M00001 TRANSFAC + 18807912 18807923 5.0E-06 GAACAGCTGTTG 12 V_RARA_04_M02891 TRANSFAC - 18806930 18806945 3.0E-06 ACAGTGGGGTCAACTT 16 V_MTF1_06_M02882 TRANSFAC - 18806799 18806812 3.0E-06 TATTAAGAAAAACC 14 V_TTF1_Q5_M02034 TRANSFAC - 18806842 18806855 7.0E-06 CGGCCCTTGAGTGC 14 V_LBP9_01_M01592 TRANSFAC + 18807355 18807371 1.0E-06 CCAGCCAGAACCAGCCC 17 V_LBP9_01_M01592 TRANSFAC - 18807405 18807421 4.0E-06 CCAGTAGGGACCAGTTC 17 V_TAL1_01_M01591 TRANSFAC + 18807127 18807139 5.0E-06 CTTCCTCCTCTTT 13 V_HOXB8_01_M01451 TRANSFAC + 18807418 18807433 3.0E-06 CTGGGCAATTATTAAT 16 V_HNF1_01_M00132 TRANSFAC - 18807420 18807434 1.0E-06 GATTAATAATTGCCC 15 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 18807910 18807925 8.0E-06 GCCAACAGCTGTTCTG 16 V_ZSCAN4_04_M02942 TRANSFAC + 18807058 18807073 1.0E-06 TAAAGCACACACATAA 16 V_GATA3_02_M00350 TRANSFAC - 18809093 18809102 7.0E-06 AGAGATAATT 10 V_TEF1_Q6_03_M01817 TRANSFAC - 18807444 18807452 3.0E-06 GAGGAATGT 9 V_PARP_Q3_M01211 TRANSFAC - 18806800 18806809 8.0E-06 TAAGAAAAAC 10 V_NKX61_02_M01469 TRANSFAC + 18807424 18807439 8.0E-06 AATTATTAATCAGATT 16 V_BDP1_01_M01796 TRANSFAC - 18804569 18804580 1.0E-06 GGTTTCGAACTC 12 V_FRA1_Q5_M01267 TRANSFAC - 18807006 18807013 1.0E-05 TGAGTCAT 8 V_P53_05_M01655 TRANSFAC - 18807586 18807605 4.0E-06 GGGCAGGCCTCGACTTGTAC 20 V_P53_04_M01652 TRANSFAC - 18807586 18807605 5.0E-06 GGGCAGGCCTCGACTTGTAC 20 V_E47_01_M00002 TRANSFAC + 18808005 18808019 9.0E-06 ACGGCAGCTGTGCCG 15 V_IRF1_Q6_01_M01881 TRANSFAC - 18807046 18807059 1.0E-06 TATTTTCTCTTTTG 14 V_P63_01_M01656 TRANSFAC + 18807586 18807605 3.0E-06 GTACAAGTCGAGGCCTGCCC 20 V_P63_01_M01656 TRANSFAC - 18807586 18807605 6.0E-06 GGGCAGGCCTCGACTTGTAC 20 V_LXRA_RXRA_Q3_M00647 TRANSFAC + 18804558 18804572 4.0E-06 CCCGAGGTCAGGAGT 15 V_MYF6_03_M02781 TRANSFAC + 18807909 18807924 8.0E-06 CCAGAACAGCTGTTGG 16 V_EWSR1FLI1_01_M02252 TRANSFAC + 18807250 18807267 4.0E-06 GGAAGCATGGAAGGAGGC 18 V_NFE2_Q6_M02104 TRANSFAC + 18807005 18807020 0.0E+00 CATGACTCACCACACC 16 V_HNF1A_Q5_M02013 TRANSFAC - 18807424 18807434 9.0E-06 GATTAATAATT 11 V_SATB1_01_M01232 TRANSFAC + 18806802 18806813 7.0E-06 TTTTCTTAATAA 12 V_BRN3C_01_M01408 TRANSFAC + 18807424 18807439 5.0E-06 AATTATTAATCAGATT 16 V_HNF1A_01_M02162 TRANSFAC - 18807421 18807434 2.0E-06 GATTAATAATTGCC 14 V_BRF1_01_M01747 TRANSFAC + 18804569 18804581 8.0E-06 GAGTTCGAAACCA 13 V_FEV_01_M02269 TRANSFAC - 18807093 18807100 1.0E-05 CAGGAAAT 8 V_GLIS2_04_M02863 TRANSFAC - 18806801 18806814 1.0E-06 TTTATTAAGAAAAA 14 PPARG_RXRA_MA0065.2 JASPAR - 18807324 18807338 6.0E-06 GAGGAGCAAAGGTGA 15 V_ESR2_01_M02377 TRANSFAC - 18812233 18812250 1.0E-05 AAGTGTCATCTTAAACTG 18 V_NF1_Q6_M00193 TRANSFAC + 18807919 18807936 5.0E-06 TGTTGGCAGTAACCCTGA 18 V_ER_Q6_M00191 TRANSFAC - 18807313 18807331 2.0E-06 AAAGGTGACTTTGAGCTGC 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.