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CNR1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1268 cannabinoid receptor 1 (brain) chr6 - 88875267 - 88880767 88875767 Transcription Factor Binding Sites   Download all TFBS in the CNR1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 88877345 88877363 4.0E-06 CGGCCACAAGAGGACGGCC 19 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 88877376 88877384 9.0E-06 GTCATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 88877375 88877384 6.0E-06 GTCATAAAAT 10 Foxa2_MA0047.2 JASPAR - 88875385 88875396 0.0E+00 TGTTTACTTAGC 12 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 88877375 88877384 9.0E-06 GTCATAAAAT 10 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX - 88877374 88877385 3.0E-06 TGTCATAAAATG 12 ZNF713_C2H2_full_monomeric_17_1 SELEX + 88875421 88875437 6.0E-06 AATAAGAACTCCACGAA 17 FOXA1_MA0148.1 JASPAR - 88875386 88875396 0.0E+00 TGTTTACTTAG 11 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 88875387 88875398 1.0E-05 TAAGTAAACACC 12 ESX1_homeodomain_full_monomeric_10_1 SELEX - 88877039 88877048 9.0E-06 AACAATTAAC 10 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 88875387 88875397 8.0E-06 TAAGTAAACAC 11 MAX_bHLH_DBD_dimeric_10_1 SELEX - 88876108 88876117 5.0E-06 AACACGTGAT 10 BARX1_homeodomain_DBD_monomeric_8_1 SELEX - 88877040 88877047 5.0E-06 ACAATTAA 8 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX - 88877375 88877384 3.0E-06 GTCATAAAAT 10 HOXC11_homeodomain_full_monomeric_11_1 SELEX - 88877375 88877385 6.0E-06 TGTCATAAAAT 11 MSX1_homeodomain_full_monomeric_8_1 SELEX - 88877094 88877101 7.0E-06 CCAATTAA 8 ZNF524_C2H2_full_dimeric_12_1 SELEX + 88876372 88876383 5.0E-06 ACCCTCACACCC 12 MSX2_homeodomain_DBD_monomeric_8_1 SELEX - 88877094 88877101 7.0E-06 CCAATTAA 8 GBX2_homeodomain_full_monomeric_10_1 SELEX - 88877039 88877048 3.0E-06 AACAATTAAC 10 GBX2_homeodomain_full_monomeric_10_1 SELEX - 88877093 88877102 5.0E-06 ACCAATTAAG 10 EOMES_TBX_DBD_monomeric_13_1 SELEX - 88877377 88877389 9.0E-06 AAGGTGTCATAAA 13 USF1_bHLH_DBD_dimeric_10_1 SELEX - 88876108 88876117 4.0E-06 AACACGTGAT 10 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 88877375 88877384 1.0E-06 GTCATAAAAT 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 88877376 88877385 6.0E-06 TGTCATAAAA 10 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 88877038 88877048 1.0E-06 AACAATTAACG 11 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 88877092 88877102 7.0E-06 ACCAATTAAGG 11 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 88877376 88877384 9.0E-06 GTCATAAAA 9 MNT_bHLH_DBD_dimeric_10_1 SELEX - 88876108 88876117 6.0E-06 AACACGTGAT 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 88877375 88877385 8.0E-06 TGTCATAAAAT 11 SREBF2_bHLH_DBD_dimeric_10_1 SELEX - 88876108 88876117 4.0E-06 AACACGTGAT 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 88876108 88876117 5.0E-06 AACACGTGAT 10 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX - 88877375 88877385 2.0E-06 TGTCATAAAAT 11 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 88875206 88875222 5.0E-06 TGGTTTATAGGCATTCA 17 Gata1_MA0035.2 JASPAR - 88877236 88877246 8.0E-06 AGAGATAAAGA 11 BSX_homeodomain_DBD_monomeric_8_1 SELEX - 88877094 88877101 7.0E-06 CCAATTAA 8 TBX2_TBX_full_monomeric_11_1 SELEX - 88877379 88877389 7.0E-06 AAGGTGTCATA 11 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 88877094 88877108 3.0E-06 TTAATTGGTCTTTAC 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 88877095 88877107 2.0E-06 TAAAGACCAATTA 13 Msx3_homeodomain_DBD_monomeric_8_1 SELEX - 88877094 88877101 7.0E-06 CCAATTAA 8 MLXIPL_bHLH_full_dimeric_10_1 SELEX + 88876108 88876117 3.0E-06 ATCACGTGTT 10 MLXIPL_bHLH_full_dimeric_10_1 SELEX - 88876108 88876117 5.0E-06 AACACGTGAT 10 MAX_MA0058.1 JASPAR - 88876109 88876118 5.0E-06 TAACACGTGA 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 88876108 88876117 9.0E-06 AACACGTGAT 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 88876108 88876117 6.0E-06 AACACGTGAT 10 Tp53_p53l_DBD_dimeric_17_1 SELEX - 88877031 88877047 1.0E-05 ACAATTAACGAGCATGT 17 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 88877375 88877384 0.0E+00 GTCATAAAAT 10 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX + 88876480 88876499 8.0E-06 CGGGGGTCACGTCTGGGGCA 20 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 88877038 88877048 5.0E-06 AACAATTAACG 11 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 88877092 88877102 7.0E-06 ACCAATTAAGG 11 LBX2_homeodomain_DBD_monomeric_10_1 SELEX - 88877093 88877102 1.0E-05 ACCAATTAAG 10 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX - 88877376 88877384 7.0E-06 GTCATAAAA 9 MLX_bHLH_full_dimeric_10_1 SELEX + 88876108 88876117 7.0E-06 ATCACGTGTT 10 Nobox_MA0125.1 JASPAR + 88877095 88877102 7.0E-06 TAATTGGT 8 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 88877375 88877385 5.0E-06 TGTCATAAAAT 11 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 88877376 88877384 6.0E-06 GTCATAAAA 9 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 88875387 88875397 1.0E-05 TAAGTAAACAC 11 CDX1_homeodomain_DBD_monomeric_9_1 SELEX - 88877376 88877384 6.0E-06 GTCATAAAA 9 RREB1_MA0073.1 JASPAR - 88875784 88875803 6.0E-06 CCCCACTCCACCCCACCCCG 20 RREB1_MA0073.1 JASPAR - 88875785 88875804 1.0E-05 ACCCCACTCCACCCCACCCC 20 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 88877375 88877385 4.0E-06 TGTCATAAAAT 11 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 88877038 88877048 4.0E-06 AACAATTAACG 11 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 88877092 88877102 8.0E-06 ACCAATTAAGG 11 V_HOXA9_01_M01351 TRANSFAC - 88877371 88877387 5.0E-06 GGTGTCATAAAATGAAC 17 V_MSX3_01_M01341 TRANSFAC - 88877091 88877106 0.0E+00 AAAGACCAATTAAGGT 16 V_CDX2_Q5_01_M01659 TRANSFAC - 88876087 88876097 4.0E-06 TTCATAAATGG 11 V_MMEF2_Q6_M00405 TRANSFAC - 88877221 88877236 5.0E-06 ATGTCTAAATAACCAC 16 V_ISL2_01_M01328 TRANSFAC - 88877091 88877106 2.0E-06 AAAGACCAATTAAGGT 16 V_ARNT_01_M00236 TRANSFAC - 88876105 88876120 5.0E-06 ATTAACACGTGATGGG 16 V_HNF3_Q6_01_M01012 TRANSFAC - 88875384 88875401 8.0E-06 GTCGGTGTTTACTTAGCT 18 V_AP2_Q6_M00189 TRANSFAC - 88875809 88875820 7.0E-06 CGCCCGCCGGAG 12 V_NERF_Q2_M00531 TRANSFAC + 88877015 88877032 9.0E-06 CGGCAGGAATTAGGGGAC 18 V_SP1_02_M01303 TRANSFAC + 88875785 88875795 5.0E-06 GGGGTGGGGTG 11 V_PU1_Q4_M01172 TRANSFAC + 88876286 88876304 5.0E-06 GTCACCTACTTCTCCTCTT 19 V_HOXA13_03_M01430 TRANSFAC + 88877032 88877047 8.0E-06 CATGCTCGTTAATTGT 16 V_HOXC13_01_M01317 TRANSFAC + 88877032 88877047 9.0E-06 CATGCTCGTTAATTGT 16 V_HOXC13_01_M01317 TRANSFAC - 88877373 88877388 8.0E-06 AGGTGTCATAAAATGA 16 V_SREBP1_01_M00220 TRANSFAC + 88876107 88876117 8.0E-06 CATCACGTGTT 11 V_MYCMAX_02_M00123 TRANSFAC + 88876107 88876118 5.0E-06 CATCACGTGTTA 12 V_ZBED6_01_M01598 TRANSFAC - 88875913 88875924 7.0E-06 GAGGCTCGCCGG 12 V_CDX2_01_M01449 TRANSFAC - 88877373 88877388 2.0E-06 AGGTGTCATAAAATGA 16 V_HNF3A_01_M01261 TRANSFAC + 88875388 88875397 3.0E-06 AAGTAAACAC 10 V_MAZ_Q6_01_M02023 TRANSFAC - 88876578 88876591 1.0E-05 CGCGGAGGGAGGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 88877170 88877183 6.0E-06 AGGGGAGGGGAGCG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 88877175 88877188 0.0E+00 GGCGGAGGGGAGGG 14 V_NKX25_02_M00241 TRANSFAC + 88877093 88877100 7.0E-06 CTTAATTG 8 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 88875386 88875396 7.0E-06 TGTTTACTTAG 11 V_STAT5A_02_M00460 TRANSFAC - 88875414 88875437 4.0E-06 TTCGTGGAGTTCTTATTCCGTGTG 24 V_HOXC11_01_M01329 TRANSFAC - 88877373 88877388 7.0E-06 AGGTGTCATAAAATGA 16 V_SOX18_03_M02801 TRANSFAC + 88877039 88877054 6.0E-06 GTTAATTGTTTCCACT 16 V_NKX52_01_M01315 TRANSFAC - 88877035 88877051 3.0E-06 GGAAACAATTAACGAGC 17 V_NKX52_01_M01315 TRANSFAC - 88877089 88877105 7.0E-06 AAGACCAATTAAGGTTT 17 V_CDX1_01_M01373 TRANSFAC - 88877373 88877388 2.0E-06 AGGTGTCATAAAATGA 16 V_HMX1_02_M01481 TRANSFAC - 88877035 88877051 2.0E-06 GGAAACAATTAACGAGC 17 V_GATA1_09_M02254 TRANSFAC - 88877236 88877246 8.0E-06 AGAGATAAAGA 11 V_HOXA11_01_M01378 TRANSFAC - 88877373 88877388 8.0E-06 AGGTGTCATAAAATGA 16 V_SP1_01_M00008 TRANSFAC + 88875780 88875789 7.0E-06 GAGGCGGGGT 10 V_CTCF_01_M01200 TRANSFAC - 88877345 88877364 7.0E-06 GCGGCCACAAGAGGACGGCC 20 V_EN2_01_M01455 TRANSFAC + 88877090 88877106 7.0E-06 AACCTTAATTGGTCTTT 17 V_S8_01_M00099 TRANSFAC - 88877037 88877052 6.0E-06 TGGAAACAATTAACGA 16 V_EOMES_04_M02851 TRANSFAC - 88876464 88876479 7.0E-06 CGGAAGGTGTTGGCGA 16 V_BARHL1_01_M01332 TRANSFAC - 88877091 88877106 0.0E+00 AAAGACCAATTAAGGT 16 V_MSX2_01_M01393 TRANSFAC - 88877090 88877106 0.0E+00 AAAGACCAATTAAGGTT 17 V_PADS_C_M00211 TRANSFAC - 88876781 88876789 8.0E-06 AGTGGTCTC 9 V_FOXO3_01_M00477 TRANSFAC - 88875387 88875400 2.0E-06 TCGGTGTTTACTTA 14 V_FOXA2_03_M02260 TRANSFAC - 88875385 88875396 0.0E+00 TGTTTACTTAGC 12 V_E47_01_M00002 TRANSFAC - 88876699 88876713 1.0E-05 AGGACAGGTGGCCGC 15 V_SIX4_01_M01374 TRANSFAC + 88877376 88877392 3.0E-06 TTTTATGACACCTTGCC 17 V_MYF6_03_M02781 TRANSFAC - 88876700 88876715 3.0E-06 GGAGGACAGGTGGCCG 16 V_POU6F1_03_M01479 TRANSFAC + 88876112 88876128 9.0E-06 CGTGTTAATGAGCCTTT 17 V_HOXC10_01_M01361 TRANSFAC - 88877373 88877388 5.0E-06 AGGTGTCATAAAATGA 16 V_BARHL2_01_M01446 TRANSFAC - 88877037 88877052 7.0E-06 TGGAAACAATTAACGA 16 V_BARHL2_01_M01446 TRANSFAC - 88877091 88877106 0.0E+00 AAAGACCAATTAAGGT 16 V_SRY_05_M02917 TRANSFAC - 88877038 88877054 7.0E-06 AGTGGAAACAATTAACG 17 V_FREAC4_01_M00292 TRANSFAC + 88875385 88875400 1.0E-06 GCTAAGTAAACACCGA 16 V_LHX4_01_M01421 TRANSFAC - 88877089 88877105 1.0E-05 AAGACCAATTAAGGTTT 17 V_HOXA10_01_M01464 TRANSFAC - 88877372 88877387 1.0E-06 GGTGTCATAAAATGAA 16 V_HMX3_02_M01413 TRANSFAC - 88877035 88877051 5.0E-06 GGAAACAATTAACGAGC 17 V_HOXD10_01_M01375 TRANSFAC - 88877371 88877387 1.0E-06 GGTGTCATAAAATGAAC 17 V_SMAD1_01_M01590 TRANSFAC - 88876123 88876134 7.0E-06 CAGGACAAAGGC 12 V_HOXC9_01_M01416 TRANSFAC - 88877373 88877388 7.0E-06 AGGTGTCATAAAATGA 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.