Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TRAPPC5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 126003 trafficking protein particle complex 5 chr19 + 7740706 - 7746206 7745706 Transcription Factor Binding Sites   Download all TFBS in the TRAPPC5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 7744398 7744416 5.0E-06 CCTCCAGCAGATGTCACTC 19 Egr1_MA0162.1 JASPAR - 7746131 7746141 7.0E-06 TGCGTGGGAGG 11 Foxa2_MA0047.2 JASPAR - 7744463 7744474 5.0E-06 TGTTTACACAAA 12 SP3_C2H2_DBD_monomeric_11_1 SELEX - 7741425 7741435 5.0E-06 GCCACACCCAC 11 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 7744349 7744360 1.0E-05 TCACATATGTCA 12 FOXA1_MA0148.1 JASPAR - 7744464 7744474 9.0E-06 TGTTTACACAA 11 FOXF2_MA0030.1 JASPAR + 7744687 7744700 7.0E-06 TGAAGATAAATAAA 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 7744698 7744714 6.0E-06 AAAGTCAAGGGAAAACA 17 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 7744465 7744476 3.0E-06 TGTGTAAACATA 12 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 7744689 7744700 4.0E-06 AAGATAAATAAA 12 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 7744697 7744705 3.0E-06 TAAAGTCAA 9 ELF4_ETS_full_monomeric_12_1 SELEX - 7747107 7747118 8.0E-06 GACCAGGAAGTG 12 FOXO3_MA0157.1 JASPAR + 7744467 7744474 7.0E-06 TGTAAACA 8 FOXD1_MA0031.1 JASPAR + 7744468 7744475 7.0E-06 GTAAACAT 8 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 7744465 7744475 3.0E-06 TGTGTAAACAT 11 CEBPA_MA0102.2 JASPAR + 7746793 7746801 2.0E-06 TTTCGCAAT 9 TBP_MA0108.2 JASPAR + 7741364 7741378 0.0E+00 GTATAAAAGCAGGGG 15 EWSR1-FLI1_MA0149.1 JASPAR + 7741385 7741402 0.0E+00 GGAGGGAGGGAAGGATGT 18 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 7744349 7744360 9.0E-06 TGACATATGTGA 12 Klf4_MA0039.2 JASPAR + 7741426 7741435 2.0E-06 TGGGTGTGGC 10 ZNF524_C2H2_full_dimeric_12_1 SELEX - 7741833 7741844 8.0E-06 ACTCTCGCACCC 12 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 7746458 7746469 6.0E-06 AGCCCTCAGGCA 12 TCF4_bHLH_full_dimeric_10_1 SELEX - 7745445 7745454 5.0E-06 CACACCTGTT 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 7744495 7744508 1.0E-06 GTAGACAGAAAACA 14 SP1_MA0079.2 JASPAR + 7746377 7746386 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR + 7746729 7746738 3.0E-06 CCCCTCCCCC 10 FOXB1_forkhead_DBD_putative-multimer_14_1 SELEX - 7744590 7744603 2.0E-06 TAATGACACAGCCG 14 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 7741847 7741863 1.0E-05 CTCTTTTCAGGGATCCA 17 TFEB_bHLH_full_dimeric_10_1 SELEX - 7744343 7744352 8.0E-06 GTCACATGAC 10 SP1_C2H2_DBD_monomeric_11_1 SELEX - 7741425 7741435 7.0E-06 GCCACACCCAC 11 SP1_C2H2_DBD_monomeric_11_1 SELEX + 7745668 7745678 1.0E-05 GCCCCGCCCAC 11 SCRT1_C2H2_DBD_monomeric_15_1 SELEX + 7745441 7745455 8.0E-06 AGCCAACAGGTGTGT 15 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 7744220 7744234 1.0E-05 CGCACACACGCACAT 15 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 7746458 7746469 8.0E-06 AGCCCTCAGGCA 12 Pou5f1_MA0142.1 JASPAR + 7741639 7741653 6.0E-06 TTTTGAAATGGAGAG 15 ELF5_ETS_full_monomeric_11_1 SELEX - 7747107 7747117 4.0E-06 ACCAGGAAGTG 11 Tp53_p53l_DBD_dimeric_17_1 SELEX - 7744333 7744349 8.0E-06 ACATGACACAGGCATGC 17 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 7744349 7744360 6.0E-06 TGACATATGTGA 12 ELF3_ETS_DBD_monomeric_12_1 SELEX - 7747107 7747118 6.0E-06 GACCAGGAAGTG 12 FOXB1_forkhead_full_monomeric_9_1 SELEX + 7744467 7744475 3.0E-06 TGTAAACAT 9 REST_MA0138.2 JASPAR + 7743439 7743459 7.0E-06 AGCATCACCATGGTCAGGAGC 21 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 7746458 7746469 6.0E-06 AGCCCTCAGGCA 12 PLAG1_MA0163.1 JASPAR - 7746367 7746380 7.0E-06 GGGGCCCAGAGGTG 14 NRF1_NRF_full_dimeric_12_1 SELEX - 7745694 7745705 1.0E-05 TGCGCAGGCGCT 12 Hic1_C2H2_DBD_dimeric_18_1 SELEX + 7744609 7744626 4.0E-06 GTGCCGAGTTATGCCACC 18 SNAI2_C2H2_DBD_monomeric_9_1 SELEX + 7745445 7745453 3.0E-06 AACAGGTGT 9 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 7744465 7744475 2.0E-06 TGTGTAAACAT 11 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 7746458 7746469 8.0E-06 AGCCCTCAGGCA 12 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 7744349 7744360 9.0E-06 TGACATATGTGA 12 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 7744495 7744508 3.0E-06 GTAGACAGAAAACA 14 V_FREAC7_01_M00293 TRANSFAC + 7744687 7744702 5.0E-06 TGAAGATAAATAAAGT 16 V_FOXO3_02_M02270 TRANSFAC + 7744467 7744474 7.0E-06 TGTAAACA 8 V_SOX14_05_M02902 TRANSFAC + 7745395 7745409 9.0E-06 TTGAGACAATTGAAC 15 V_ZFP410_04_M02936 TRANSFAC - 7741378 7741394 5.0E-06 CCCTCCCTCCCCAAATC 17 V_FOXA2_04_M02749 TRANSFAC + 7744463 7744479 3.0E-06 TTTGTGTAAACATACTA 17 V_FOXA2_04_M02749 TRANSFAC + 7744687 7744703 4.0E-06 TGAAGATAAATAAAGTC 17 V_STAT_Q6_M00777 TRANSFAC - 7744281 7744293 1.0E-05 CACCTTTCTGGGA 13 V_POU5F1_02_M02245 TRANSFAC + 7741639 7741653 6.0E-06 TTTTGAAATGGAGAG 15 V_GABP_B_M00341 TRANSFAC - 7747105 7747116 3.0E-06 CCAGGAAGTGCA 12 V_EGR_Q6_M00807 TRANSFAC + 7746188 7746198 6.0E-06 GTGGGGGCGGG 11 V_NKX25_Q6_M02108 TRANSFAC - 7746982 7746992 7.0E-06 CCCACTTGCAA 11 V_GABPA_04_M02858 TRANSFAC + 7741879 7741894 6.0E-06 CTTTCTTCCCCCCACC 16 V_FOXJ1_03_M02750 TRANSFAC + 7744465 7744480 3.0E-06 TGTGTAAACATACTAG 16 V_SP1_03_M02281 TRANSFAC + 7746377 7746386 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC + 7746729 7746738 3.0E-06 CCCCTCCCCC 10 V_GKLF_02_M01588 TRANSFAC - 7741424 7741435 7.0E-06 GCCACACCCACA 12 V_GKLF_02_M01588 TRANSFAC - 7746651 7746662 8.0E-06 GCCCCGCCCTGC 12 V_EGR1_02_M01972 TRANSFAC - 7746131 7746141 4.0E-06 TGCGTGGGAGG 11 V_SP1_02_M01303 TRANSFAC + 7746078 7746088 8.0E-06 GGGGCGGGGGC 11 V_SP1_02_M01303 TRANSFAC - 7746235 7746245 5.0E-06 GGGGTGGGGAG 11 V_AP4_Q6_02_M01860 TRANSFAC - 7742871 7742883 6.0E-06 GCAGCTGTGGTCA 13 V_GM497_04_M02864 TRANSFAC - 7744222 7744237 1.0E-06 GCACGCACACACGCAC 16 V_GM497_04_M02864 TRANSFAC - 7744238 7744253 1.0E-05 AAATGCACACACACGC 16 V_CEBPB_01_M00109 TRANSFAC - 7741898 7741911 4.0E-06 AGATGAGGAAATCT 14 V_HNF1_C_M00206 TRANSFAC + 7744289 7744305 6.0E-06 AGGTGATGAATGAATAG 17 V_WT1_Q6_01_M02036 TRANSFAC - 7746080 7746089 4.0E-06 CGCCCCCGCC 10 V_ZNF219_01_M01122 TRANSFAC + 7745778 7745789 3.0E-06 CACCCCCCTGCC 12 V_ZNF219_01_M01122 TRANSFAC + 7746921 7746932 1.0E-06 CTCCCCCCTCCC 12 V_GC_01_M00255 TRANSFAC + 7741512 7741525 4.0E-06 TGGGGGTGGAGCTG 14 V_POU3F2_01_M00463 TRANSFAC - 7744692 7744705 3.0E-06 TTGACTTTATTTAT 14 V_FKLF_Q5_M01837 TRANSFAC + 7746349 7746358 2.0E-06 GGGGTGGGAG 10 V_TEF_Q6_M00672 TRANSFAC - 7744464 7744475 1.0E-06 ATGTTTACACAA 12 V_TATA_01_M00252 TRANSFAC + 7741364 7741378 0.0E+00 GTATAAAAGCAGGGG 15 V_XFD3_01_M00269 TRANSFAC + 7744465 7744478 0.0E+00 TGTGTAAACATACT 14 V_KROX_Q6_M00982 TRANSFAC + 7745670 7745683 3.0E-06 CCCGCCCACACGCC 14 V_KROX_Q6_M00982 TRANSFAC - 7746078 7746091 0.0E+00 GCCGCCCCCGCCCC 14 V_SP1_Q6_M00196 TRANSFAC - 7745667 7745679 8.0E-06 TGTGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC - 7746727 7746739 7.0E-06 GGGGGGAGGGGCG 13 V_HNF3A_01_M01261 TRANSFAC + 7744466 7744475 3.0E-06 GTGTAAACAT 10 V_MAZ_Q6_01_M02023 TRANSFAC + 7741382 7741395 3.0E-06 TGGGGAGGGAGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 7741386 7741399 1.0E-06 GAGGGAGGGAAGGA 14 V_ZF5_B_M00333 TRANSFAC + 7747141 7747153 0.0E+00 TGGAGGCGCGCTT 13 V_EGR1_Q6_M01873 TRANSFAC + 7746081 7746090 4.0E-06 GCGGGGGCGG 10 V_HIC1_05_M02763 TRANSFAC + 7744616 7744631 4.0E-06 GTTATGCCACCCTGTG 16 V_SZF11_01_M01109 TRANSFAC + 7746908 7746922 5.0E-06 CGAGGGTATAAGACT 15 V_ASCL2_03_M02737 TRANSFAC + 7742872 7742888 6.0E-06 GACCACAGCTGCTGATG 17 V_OCT1_04_M00138 TRANSFAC + 7744678 7744700 8.0E-06 TGTGACTTATGAAGATAAATAAA 23 V_HBP1_03_M02762 TRANSFAC + 7744291 7744306 2.0E-06 GTGATGAATGAATAGG 16 V_EVI1_Q3_M02002 TRANSFAC - 7742028 7742036 6.0E-06 TTTCTTGTC 9 V_XFD2_01_M00268 TRANSFAC + 7744465 7744478 5.0E-06 TGTGTAAACATACT 14 V_POU6F1_01_M00465 TRANSFAC - 7744692 7744702 9.0E-06 ACTTTATTTAT 11 V_CTCF_02_M01259 TRANSFAC + 7744395 7744414 8.0E-06 GCACCTCCAGCAGATGTCAC 20 V_TBX5_01_M01019 TRANSFAC + 7741620 7741631 6.0E-06 TGAGGTGTCACA 12 V_SP4_Q5_M01273 TRANSFAC + 7745668 7745678 9.0E-06 GCCCCGCCCAC 11 V_SP4_Q5_M01273 TRANSFAC + 7746728 7746738 5.0E-06 GCCCCTCCCCC 11 V_ELF1_Q6_M00746 TRANSFAC - 7741900 7741911 3.0E-06 AGATGAGGAAAT 12 V_ELF1_Q6_M00746 TRANSFAC + 7741973 7741984 8.0E-06 AGTGGAGGAAAT 12 V_TTF1_Q5_M02034 TRANSFAC + 7745389 7745402 3.0E-06 ATGCACTTGAGACA 14 V_TAL1_01_M01591 TRANSFAC + 7741901 7741913 6.0E-06 TTTCCTCATCTGC 13 V_TFEB_01_M01768 TRANSFAC + 7744343 7744352 8.0E-06 GTCATGTGAC 10 V_TFEB_01_M01768 TRANSFAC - 7744343 7744352 8.0E-06 GTCACATGAC 10 V_FOXL1_04_M02753 TRANSFAC + 7744463 7744479 3.0E-06 TTTGTGTAAACATACTA 17 V_FOXL1_04_M02753 TRANSFAC + 7744687 7744703 3.0E-06 TGAAGATAAATAAAGTC 17 V_PLAG1_01_M01778 TRANSFAC - 7746515 7746530 3.0E-06 GGGGCTTTAACAGGGG 16 V_PLAG1_01_M01778 TRANSFAC - 7747082 7747097 3.0E-06 GGGGCAATGGGAAGGG 16 V_MYCMAX_B_M00322 TRANSFAC + 7745566 7745575 3.0E-06 GCCACGCGCG 10 V_MAX_04_M02881 TRANSFAC + 7744341 7744354 1.0E-06 GTGTCATGTGACAT 14 V_ZFP206_01_M01742 TRANSFAC - 7745695 7745705 1.0E-06 TGCGCAGGCGC 11 V_FPM315_01_M01587 TRANSFAC - 7746378 7746389 9.0E-06 CTGGGAGGAGGG 12 V_NRF2_Q4_M00821 TRANSFAC + 7744590 7744602 1.0E-05 CGGCTGTGTCATT 13 V_NRSF_01_M00256 TRANSFAC + 7743439 7743459 9.0E-06 AGCATCACCATGGTCAGGAGC 21 V_ASCL2_04_M02841 TRANSFAC + 7746233 7746248 3.0E-06 CGCTCCCCACCCCATT 16 V_FOXA2_03_M02260 TRANSFAC - 7744463 7744474 5.0E-06 TGTTTACACAAA 12 V_FOX_Q2_M00809 TRANSFAC - 7744689 7744701 7.0E-06 CTTTATTTATCTT 13 V_REST_02_M02256 TRANSFAC + 7743439 7743459 7.0E-06 AGCATCACCATGGTCAGGAGC 21 V_STAT6_02_M00500 TRANSFAC - 7741978 7741985 1.0E-05 GATTTCCT 8 V_ZFP281_01_M01597 TRANSFAC - 7746729 7746739 2.0E-06 GGGGGGAGGGG 11 V_SRF_Q5_01_M00922 TRANSFAC - 7745708 7745722 5.0E-06 CCGTAAAAGGCGCTG 15 V_SRF_Q4_M00810 TRANSFAC - 7745706 7745723 8.0E-06 GCCGTAAAAGGCGCTGCG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 7741385 7741402 0.0E+00 GGAGGGAGGGAAGGATGT 18 V_FOXJ2_01_M00422 TRANSFAC + 7744686 7744703 9.0E-06 ATGAAGATAAATAAAGTC 18 V_EKLF_Q5_M01874 TRANSFAC - 7741425 7741434 9.0E-06 CCACACCCAC 10 V_TFE_Q6_M01029 TRANSFAC + 7744344 7744351 1.0E-05 TCATGTGA 8 V_SP1_Q4_01_M00932 TRANSFAC - 7745667 7745679 8.0E-06 TGTGGGCGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC - 7746727 7746739 9.0E-06 GGGGGGAGGGGCG 13 V_PBX1_Q3_M02028 TRANSFAC - 7746933 7746941 6.0E-06 ATAAATCAA 9 V_CEBPG_Q6_01_M01869 TRANSFAC - 7741899 7741910 6.0E-06 GATGAGGAAATC 12 V_FOXK1_03_M02752 TRANSFAC + 7744687 7744703 2.0E-06 TGAAGATAAATAAAGTC 17 V_EGR3_01_M00245 TRANSFAC - 7746131 7746142 1.0E-05 CTGCGTGGGAGG 12 V_OCT4_01_M01125 TRANSFAC + 7741639 7741653 7.0E-06 TTTTGAAATGGAGAG 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.