Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C15orf40 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 123207 chromosome 15 open reading frame 40 chr15 - 83679893 - 83685393 83680393 Transcription Factor Binding Sites   Download all TFBS in the C15orf40 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 83679763 83679781 1.0E-06 CTGCCAGCAGGAGGCAGTG 19 Pax5_MA0014.1 JASPAR + 83680058 83680077 5.0E-06 AGCCTACTGAGGCGGGGCGA 20 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX + 83679971 83679984 1.0E-06 GAGGCCAAAGGTCA 14 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 83679971 83679984 0.0E+00 GAGGCCAAAGGTCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 83679971 83679984 0.0E+00 GAGGCCAAAGGTCA 14 NR2F1_MA0017.1 JASPAR - 83679971 83679984 1.0E-06 TGACCTTTGGCCTC 14 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX + 83679968 83679984 1.0E-06 TAGGAGGCCAAAGGTCA 17 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX + 83679971 83679985 0.0E+00 GAGGCCAAAGGTCAG 15 SOX15_HMG_full_dimeric_15_1 SELEX - 83680632 83680646 1.0E-05 GACAATACCTTTCTT 15 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 83679971 83679984 1.0E-06 GAGGCCAAAGGTCA 14 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX + 83679971 83679985 1.0E-06 GAGGCCAAAGGTCAG 15 HNF4A_MA0114.1 JASPAR + 83679972 83679984 0.0E+00 AGGCCAAAGGTCA 13 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX + 83679971 83679984 0.0E+00 GAGGCCAAAGGTCA 14 NRF1_NRF_full_dimeric_12_1 SELEX + 83680391 83680402 7.0E-06 TGCGCTTGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 83680391 83680402 7.0E-06 TGCGCAAGCGCA 12 Sox2_MA0143.1 JASPAR + 83680512 83680526 6.0E-06 CTTTTGTTCTGGAAC 15 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX + 83679971 83679984 0.0E+00 GAGGCCAAAGGTCA 14 ZNF784_C2H2_full_monomeric_10_1 SELEX + 83680813 83680822 3.0E-06 GCACCTACCT 10 V_STAT5A_Q6_M01890 TRANSFAC + 83680645 83680657 5.0E-06 TCACTTCTCAGAA 13 V_SOX40_04_M02908 TRANSFAC + 83679672 83679687 0.0E+00 CAAAATTATAATACAC 16 V_SRY_07_M02813 TRANSFAC + 83679672 83679687 0.0E+00 CAAAATTATAATACAC 16 V_SRY_07_M02813 TRANSFAC - 83679672 83679687 0.0E+00 GTGTATTATAATTTTG 16 V_ZFX_01_M01593 TRANSFAC + 83680081 83680096 1.0E-05 CAGCAGGCCGCAGCTC 16 V_DR4_Q2_M00965 TRANSFAC + 83681062 83681078 7.0E-06 TGAACTAGAGTAACCGC 17 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 83679973 83679985 7.0E-06 CTGACCTTTGGCC 13 V_EAR2_Q2_M01728 TRANSFAC - 83679971 83679984 3.0E-06 TGACCTTTGGCCTC 14 V_HNF4A_03_M02220 TRANSFAC + 83679972 83679984 0.0E+00 AGGCCAAAGGTCA 13 V_PPAR_DR1_Q2_M00763 TRANSFAC - 83679972 83679984 0.0E+00 TGACCTTTGGCCT 13 V_COUPTF_Q6_M01036 TRANSFAC - 83679967 83679989 0.0E+00 TGTGCTGACCTTTGGCCTCCTAC 23 V_SOX21_03_M02803 TRANSFAC + 83679672 83679687 2.0E-06 CAAAATTATAATACAC 16 V_SOX21_03_M02803 TRANSFAC - 83679672 83679687 1.0E-06 GTGTATTATAATTTTG 16 V_PPARGRXRA_01_M02262 TRANSFAC + 83679970 83679984 0.0E+00 GGAGGCCAAAGGTCA 15 V_ETS_Q4_M00771 TRANSFAC - 83680538 83680549 4.0E-06 CTCCACTTCCTG 12 V_HNF4_01_B_M00411 TRANSFAC + 83679971 83679985 0.0E+00 GAGGCCAAAGGTCAG 15 V_COUP_01_M00158 TRANSFAC - 83679971 83679984 1.0E-06 TGACCTTTGGCCTC 14 V_MRF2_01_M00454 TRANSFAC + 83679892 83679905 5.0E-06 AAGCAGAATACAGC 14 V_IK1_01_M00086 TRANSFAC + 83681134 83681146 3.0E-06 ACTTGGGAATGAC 13 V_SOX_Q6_M01014 TRANSFAC - 83679815 83679827 6.0E-06 ATCTTTGTTTGGC 13 V_MATH1_Q2_M01716 TRANSFAC - 83680038 83680047 9.0E-06 CCACCTGGTG 10 V_OCT1_04_M00138 TRANSFAC + 83679661 83679683 2.0E-06 GAAAGAACATACAAAATTATAAT 23 V_OCT1_08_M01354 TRANSFAC - 83679670 83679685 8.0E-06 GTATTATAATTTTGTA 16 V_PPARG_03_M00528 TRANSFAC + 83679968 83679984 0.0E+00 TAGGAGGCCAAAGGTCA 17 V_DAX1_01_M01248 TRANSFAC + 83679971 83679990 8.0E-06 GAGGCCAAAGGTCAGCACAC 20 V_TEL2_Q6_M00678 TRANSFAC - 83680538 83680547 6.0E-06 CCACTTCCTG 10 V_PNR_01_M01650 TRANSFAC + 83679971 83679984 8.0E-06 GAGGCCAAAGGTCA 14 V_HNF4A_Q6_01_M02016 TRANSFAC + 83679973 83679987 1.0E-06 GGCCAAAGGTCAGCA 15 V_HNF4_DR1_Q3_M00764 TRANSFAC - 83679972 83679984 0.0E+00 TGACCTTTGGCCT 13 V_CTCF_02_M01259 TRANSFAC + 83679760 83679779 3.0E-06 ATGCTGCCAGCAGGAGGCAG 20 V_SOX11_03_M02795 TRANSFAC - 83680508 83680524 5.0E-06 TCCAGAACAAAAGAGAC 17 V_CTCF_01_M01200 TRANSFAC + 83679762 83679781 1.0E-06 GCTGCCAGCAGGAGGCAGTG 20 V_GR_Q6_02_M01836 TRANSFAC - 83679662 83679674 7.0E-06 TTGTATGTTCTTT 13 V_EOMES_04_M02851 TRANSFAC - 83680452 83680467 7.0E-06 CTTAAGGTGTCGCCCT 16 V_DR1_Q3_M00762 TRANSFAC + 83679972 83679984 0.0E+00 AGGCCAAAGGTCA 13 NR1H2_RXRA_MA0115.1 JASPAR + 83679970 83679986 3.0E-06 GGAGGCCAAAGGTCAGC 17 V_HNF4_Q6_01_M01031 TRANSFAC + 83679972 83679985 0.0E+00 AGGCCAAAGGTCAG 14 V_TCF7_04_M02921 TRANSFAC - 83679673 83679687 4.0E-06 GTGTATTATAATTTT 15 V_ZFP206_01_M01742 TRANSFAC - 83680392 83680402 5.0E-06 TGCGCAAGCGC 11 V_E2_Q6_01_M00928 TRANSFAC - 83679818 83679833 7.0E-06 TCCACCATCTTTGTTT 16 V_NRF1_Q6_M00652 TRANSFAC + 83680393 83680402 8.0E-06 CGCTTGCGCA 10 V_STAT5A_01_M00457 TRANSFAC - 83680646 83680660 7.0E-06 CAATTCTGAGAAGTG 15 V_SOX2_01_M02246 TRANSFAC + 83680512 83680526 6.0E-06 CTTTTGTTCTGGAAC 15 V_NUR77_Q5_M01217 TRANSFAC - 83679976 83679985 7.0E-06 CTGACCTTTG 10 V_SOX2_Q6_M01272 TRANSFAC - 83679815 83679830 8.0E-06 ACCATCTTTGTTTGGC 16 V_RXRLXRB_01_M01198 TRANSFAC + 83679972 83679984 1.0E-06 AGGCCAAAGGTCA 13 V_HNF4_01_M00134 TRANSFAC + 83679969 83679987 0.0E+00 AGGAGGCCAAAGGTCAGCA 19 V_SOX5_04_M02910 TRANSFAC - 83679670 83679684 1.0E-05 TATTATAATTTTGTA 15 V_COUP_DR1_Q6_M00765 TRANSFAC - 83679972 83679984 0.0E+00 TGACCTTTGGCCT 13 V_STAT1_05_M01260 TRANSFAC - 83680639 83680660 3.0E-06 CAATTCTGAGAAGTGACAATAC 22 V_SEF1_C_M00214 TRANSFAC - 83680086 83680104 7.0E-06 CACCCCCAGAGCTGCGGCC 19 V_SMAD1_01_M01590 TRANSFAC - 83680511 83680522 1.0E-06 CAGAACAAAAGA 12 PPARG_RXRA_MA0065.2 JASPAR + 83679970 83679984 0.0E+00 GGAGGCCAAAGGTCA 15 V_SOX14_03_M02798 TRANSFAC + 83679672 83679687 1.0E-06 CAAAATTATAATACAC 16 V_SOX14_03_M02798 TRANSFAC - 83679672 83679687 0.0E+00 GTGTATTATAATTTTG 16 V_TR4_03_M01782 TRANSFAC + 83679972 83679984 1.0E-06 AGGCCAAAGGTCA 13 V_NANOG_02_M01247 TRANSFAC - 83680507 83680526 1.0E-06 GTTCCAGAACAAAAGAGACT 20 V_PPARG_01_M00512 TRANSFAC + 83679968 83679988 3.0E-06 TAGGAGGCCAAAGGTCAGCAC 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.