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FOXN4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 121643 forkhead box N4 chr12 - 109746525 - 109752025 109747025 Transcription Factor Binding Sites   Download all TFBS in the FOXN4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HINFP1_C2H2_full_dimeric_19_1 SELEX + 109747941 109747959 9.0E-06 GCGGACCGCGGACGGCGGC 19 Foxa2_MA0047.2 JASPAR - 109745055 109745066 7.0E-06 TGTTTACCCAGG 12 Tp53_p53l_DBD_dimeric_18_1 SELEX + 109747289 109747306 8.0E-06 GCATGCCCGAGAGCATGC 18 FOXA1_MA0148.1 JASPAR - 109745056 109745066 9.0E-06 TGTTTACCCAG 11 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 109745545 109745558 5.0E-06 CAATTAAATGATGA 14 FOXF2_MA0030.1 JASPAR - 109742298 109742311 1.0E-05 CAACGGTAAACAGG 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 109748415 109748431 2.0E-06 TTAAAAAAAAAAAAACA 17 Esrrb_MA0141.1 JASPAR - 109748514 109748525 4.0E-06 GTGCCAAGGTCA 12 Barhl1_homeodomain_DBD_monomeric_10_1 SELEX + 109745547 109745556 7.0E-06 ATTAAATGAT 10 HMX3_homeodomain_DBD_monomeric_11_1 SELEX + 109745543 109745553 5.0E-06 ATCAATTAAAT 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 109748415 109748428 4.0E-06 AAAAAAAAAAAACA 14 RAX_homeodomain_DBD_monomeric_10_1 SELEX + 109745543 109745552 6.0E-06 ATCAATTAAA 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX + 109742478 109742487 9.0E-06 GAAAATTAAC 10 ZIC3_C2H2_full_monomeric_15_1 SELEX - 109747545 109747559 8.0E-06 CCCCTCCCGCTGCGC 15 BARHL2_homeodomain_full_monomeric_10_1 SELEX + 109745547 109745556 5.0E-06 ATTAAATGAT 10 MIXL1_homeodomain_full_monomeric_10_1 SELEX + 109745543 109745552 5.0E-06 ATCAATTAAA 10 GSX2_homeodomain_DBD_monomeric_10_1 SELEX + 109745543 109745552 5.0E-06 ATCAATTAAA 10 RFX4_RFX_DBD_dimeric_15_1 SELEX - 109747161 109747175 8.0E-06 GGCTGCTGGGAAACG 15 Foxd3_MA0041.1 JASPAR + 109748412 109748423 9.0E-06 GACTGTTTTTTT 12 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 109748512 109748522 6.0E-06 CCAAGGTCACA 11 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX + 109747119 109747138 2.0E-06 CAAGGGTCAGTTACAGGGCA 20 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 109745543 109745553 3.0E-06 ATCAATTAAAT 11 LBX2_homeodomain_DBD_monomeric_10_1 SELEX + 109745543 109745552 1.0E-05 ATCAATTAAA 10 EMX1_homeodomain_DBD_dimeric_14_1 SELEX + 109745545 109745558 5.0E-06 CAATTAAATGATGA 14 NRF1_NRF_full_dimeric_12_1 SELEX - 109747083 109747094 4.0E-06 TGCGCATGCTCT 12 MNX1_homeodomain_DBD_monomeric_10_1 SELEX + 109745543 109745552 5.0E-06 ATCAATTAAA 10 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 109748415 109748427 4.0E-06 AAAAAAAAAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 109748415 109748427 1.0E-06 AAAAAAAAAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 109748417 109748429 6.0E-06 AAAAAAAAAAAAA 13 RREB1_MA0073.1 JASPAR - 109747199 109747218 7.0E-06 ACACACACCCCCCCCCCAGA 20 RREB1_MA0073.1 JASPAR - 109747204 109747223 7.0E-06 CCCTCACACACACCCCCCCC 20 RREB1_MA0073.1 JASPAR - 109747206 109747225 8.0E-06 CCCCCTCACACACACCCCCC 20 HMX1_homeodomain_DBD_monomeric_11_1 SELEX + 109745543 109745553 1.0E-06 ATCAATTAAAT 11 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 109748415 109748428 5.0E-06 AAAAAAAAAAAACA 14 RXR_RAR_DR5_MA0159.1 JASPAR + 109748444 109748460 7.0E-06 AGTTCAGGAAGAACTCA 17 V_HNF3B_01_M00131 TRANSFAC + 109748410 109748424 5.0E-06 GTGACTGTTTTTTTT 15 V_SPI1_01_M01203 TRANSFAC + 109745552 109745568 7.0E-06 ATGATGAGGAAGTGAGG 17 V_TGIF_01_M00418 TRANSFAC - 109742408 109742418 2.0E-06 AGCTGTCAGGA 11 V_MSX3_01_M01341 TRANSFAC + 109745539 109745554 4.0E-06 CAAGATCAATTAAATG 16 V_MYOD_Q6_M00184 TRANSFAC + 109747503 109747512 7.0E-06 TCCACCTGTC 10 V_AREB6_03_M00414 TRANSFAC + 109748402 109748413 5.0E-06 CCGCACCTGTGA 12 V_NF1_Q6_01_M00806 TRANSFAC - 109748517 109748533 2.0E-06 ATGGACCAGTGCCAAGG 17 V_HMGIY_Q3_M01010 TRANSFAC + 109748413 109748427 6.0E-06 ACTGTTTTTTTTTTT 15 V_MAFB_05_M02775 TRANSFAC + 109742379 109742395 9.0E-06 CAATTTGCTGTCTAGGC 17 V_MMEF2_Q6_M00405 TRANSFAC + 109747048 109747063 5.0E-06 GTTTTTAAATTTCCCT 16 V_MMEF2_Q6_M00405 TRANSFAC - 109748420 109748435 1.0E-06 GGGTTTAAAAAAAAAA 16 V_SATB1_Q3_M01723 TRANSFAC + 109742479 109742494 2.0E-06 AAAATTAACGGCCAAA 16 V_LBX2_01_M01401 TRANSFAC - 109745539 109745555 7.0E-06 TCATTTAATTGATCTTG 17 V_EGR_Q6_M00807 TRANSFAC - 109748301 109748311 3.0E-06 GTGGGGGCGGC 11 V_ISL2_01_M01328 TRANSFAC + 109745539 109745554 2.0E-06 CAAGATCAATTAAATG 16 V_PLAG1_02_M01973 TRANSFAC - 109747595 109747610 4.0E-06 CCCCCCTCGCGGCCCC 16 V_HNF3_Q6_01_M01012 TRANSFAC + 109748410 109748427 4.0E-06 GTGACTGTTTTTTTTTTT 18 V_PITX2_Q6_M02114 TRANSFAC + 109748427 109748436 5.0E-06 TTTAAACCCA 10 V_LHX3_01_M01471 TRANSFAC + 109745540 109745556 1.0E-05 AAGATCAATTAAATGAT 17 V_PPAR_DR1_Q2_M00763 TRANSFAC - 109745572 109745584 9.0E-06 AGTCCTTTGCCCT 13 V_E2A_Q2_M00804 TRANSFAC + 109747504 109747517 1.0E-06 CCACCTGTCCCTTT 14 V_COUPTF_Q6_M01036 TRANSFAC + 109748509 109748531 1.0E-05 GGCTGTGACCTTGGCACTGGTCC 23 V_HOXD13_01_M01404 TRANSFAC + 109745541 109745556 9.0E-06 AGATCAATTAAATGAT 16 V_BRN2_01_M00145 TRANSFAC + 109742472 109742487 1.0E-06 GCCATTGAAAATTAAC 16 V_TCFAP2E_04_M02926 TRANSFAC - 109748416 109748429 7.0E-06 AAAAAAAAAAAAAC 14 V_TCFAP2E_04_M02926 TRANSFAC - 109748417 109748430 0.0E+00 TAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 109748418 109748431 1.0E-06 TTAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 109748419 109748432 4.0E-06 TTTAAAAAAAAAAA 14 V_LDSPOLYA_B_M00317 TRANSFAC + 109748411 109748426 4.0E-06 TGACTGTTTTTTTTTT 16 V_HOXC13_01_M01317 TRANSFAC + 109749864 109749879 8.0E-06 TAAGCTTATAAATCAA 16 V_PAX_Q6_M00808 TRANSFAC - 109745020 109745030 9.0E-06 CTGCAACTCAC 11 V_ELF4_04_M02850 TRANSFAC - 109748415 109748431 3.0E-06 TTAAAAAAAAAAAAACA 17 V_ELF4_04_M02850 TRANSFAC - 109748416 109748432 0.0E+00 TTTAAAAAAAAAAAAAC 17 V_ELF4_04_M02850 TRANSFAC - 109748417 109748433 0.0E+00 GTTTAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 109748418 109748434 0.0E+00 GGTTTAAAAAAAAAAAA 17 V_SOX13_03_M02797 TRANSFAC + 109745538 109745553 9.0E-06 ACAAGATCAATTAAAT 16 V_ZNF219_01_M01122 TRANSFAC - 109747202 109747213 1.0E-06 CACCCCCCCCCC 12 V_SPI1_03_M02078 TRANSFAC + 109745556 109745565 4.0E-06 TGAGGAAGTG 10 V_ZFP105_03_M02827 TRANSFAC - 109748414 109748428 1.0E-06 AAAAAAAAAAAACAG 15 V_ZFP105_03_M02827 TRANSFAC - 109748415 109748429 1.0E-06 AAAAAAAAAAAAACA 15 V_ZFP105_03_M02827 TRANSFAC - 109748416 109748430 2.0E-06 TAAAAAAAAAAAAAC 15 V_ZFP105_03_M02827 TRANSFAC - 109748417 109748431 0.0E+00 TTAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 109748418 109748432 0.0E+00 TTTAAAAAAAAAAAA 15 V_NKX61_01_M00424 TRANSFAC - 109745542 109745554 3.0E-06 CATTTAATTGATC 13 V_AMEF2_Q6_M00403 TRANSFAC + 109747048 109747065 3.0E-06 GTTTTTAAATTTCCCTCT 18 V_AMEF2_Q6_M00403 TRANSFAC - 109748418 109748435 6.0E-06 GGGTTTAAAAAAAAAAAA 18 V_HOXB9_01_M01426 TRANSFAC + 109745541 109745556 6.0E-06 AGATCAATTAAATGAT 16 V_HNF3_Q6_M00791 TRANSFAC - 109748413 109748425 3.0E-06 AAAAAAAAACAGT 13 V_GSH2_01_M01326 TRANSFAC + 109745541 109745556 8.0E-06 AGATCAATTAAATGAT 16 V_LEF1_03_M02878 TRANSFAC + 109745539 109745554 4.0E-06 CAAGATCAATTAAATG 16 V_NKX52_01_M01315 TRANSFAC + 109745540 109745556 0.0E+00 AAGATCAATTAAATGAT 17 V_HMX1_02_M01481 TRANSFAC + 109745540 109745556 2.0E-06 AAGATCAATTAAATGAT 17 V_DAX1_01_M01248 TRANSFAC - 109748508 109748527 8.0E-06 CAGTGCCAAGGTCACAGCCC 20 V_RREB1_01_M00257 TRANSFAC - 109747205 109747218 8.0E-06 ACACACACCCCCCC 14 V_ARID3A_04_M02735 TRANSFAC - 109748419 109748435 4.0E-06 GGGTTTAAAAAAAAAAA 17 V_NKX63_01_M01470 TRANSFAC - 109745540 109745556 8.0E-06 ATCATTTAATTGATCTT 17 V_LIM1_01_M01418 TRANSFAC + 109745540 109745556 5.0E-06 AAGATCAATTAAATGAT 17 V_SF1_Q6_01_M01132 TRANSFAC + 109748514 109748522 7.0E-06 TGACCTTGG 9 V_TFIII_Q6_M00706 TRANSFAC - 109744974 109744982 6.0E-06 AGAGGGAGG 9 V_MTF1_06_M02882 TRANSFAC - 109748415 109748428 4.0E-06 AAAAAAAAAAAACA 14 V_MTF1_06_M02882 TRANSFAC - 109748416 109748429 1.0E-06 AAAAAAAAAAAAAC 14 V_MTF1_06_M02882 TRANSFAC - 109748417 109748430 4.0E-06 TAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 109748420 109748433 6.0E-06 GTTTAAAAAAAAAA 14 V_EHF_06_M02745 TRANSFAC + 109745552 109745566 8.0E-06 ATGATGAGGAAGTGA 15 V_FAC1_01_M00456 TRANSFAC - 109748415 109748428 6.0E-06 AAAAAAAAAAAACA 14 V_MYOD_Q6_01_M00929 TRANSFAC - 109747581 109747598 9.0E-06 CCCCAGCAGGTGGAGGCG 18 V_SMAD4_04_M02898 TRANSFAC + 109742391 109742407 8.0E-06 TAGGCCCCGCCACTGAC 17 V_BARHL1_01_M01332 TRANSFAC + 109745539 109745554 8.0E-06 CAAGATCAATTAAATG 16 V_ERR2_01_M01589 TRANSFAC - 109748511 109748522 3.0E-06 CCAAGGTCACAG 12 V_TCF7L2_04_M02922 TRANSFAC + 109745539 109745554 9.0E-06 CAAGATCAATTAAATG 16 V_ZFP206_01_M01742 TRANSFAC - 109747084 109747094 3.0E-06 TGCGCATGCTC 11 V_SPIC_02_M02077 TRANSFAC + 109745556 109745565 5.0E-06 TGAGGAAGTG 10 V_FOXA2_03_M02260 TRANSFAC - 109745055 109745066 7.0E-06 TGTTTACCCAGG 12 V_PBX1_03_M01017 TRANSFAC + 109745541 109745552 6.0E-06 AGATCAATTAAA 12 V_BBX_03_M02739 TRANSFAC + 109745545 109745559 5.0E-06 CAATTAAATGATGAG 15 V_RXR_RAR_01_M02272 TRANSFAC + 109748444 109748460 7.0E-06 AGTTCAGGAAGAACTCA 17 V_SRF_06_M02916 TRANSFAC - 109748411 109748427 8.0E-06 AAAAAAAAAAACAGTCA 17 V_SRF_06_M02916 TRANSFAC - 109748412 109748428 1.0E-06 AAAAAAAAAAAACAGTC 17 V_SRF_06_M02916 TRANSFAC - 109748413 109748429 1.0E-06 AAAAAAAAAAAAACAGT 17 V_SRF_06_M02916 TRANSFAC - 109748414 109748430 1.0E-06 TAAAAAAAAAAAAACAG 17 V_SRF_06_M02916 TRANSFAC - 109748415 109748431 0.0E+00 TTAAAAAAAAAAAAACA 17 V_SRF_06_M02916 TRANSFAC - 109748416 109748432 0.0E+00 TTTAAAAAAAAAAAAAC 17 V_SRF_06_M02916 TRANSFAC - 109748417 109748433 0.0E+00 GTTTAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 109748418 109748434 0.0E+00 GGTTTAAAAAAAAAAAA 17 V_ZIC1_04_M02835 TRANSFAC + 109745032 109745045 3.0E-06 GACCCCGGGGGGGC 14 V_ALX3_01_M01355 TRANSFAC + 109745540 109745556 5.0E-06 AAGATCAATTAAATGAT 17 V_BSX_01_M01442 TRANSFAC + 109745541 109745556 6.0E-06 AGATCAATTAAATGAT 16 V_BARHL2_01_M01446 TRANSFAC + 109745539 109745554 3.0E-06 CAAGATCAATTAAATG 16 V_FREAC4_01_M00292 TRANSFAC + 109745055 109745070 3.0E-06 CCTGGGTAAACAGGGC 16 V_LHX5_01_M01353 TRANSFAC + 109745540 109745556 1.0E-06 AAGATCAATTAAATGAT 17 V_HMX3_02_M01413 TRANSFAC + 109745540 109745556 0.0E+00 AAGATCAATTAAATGAT 17 V_HOXD10_01_M01375 TRANSFAC + 109747366 109747382 9.0E-06 GGTGCATTAAAACTTGC 17 V_PBX1_Q3_M02028 TRANSFAC + 109749871 109749879 6.0E-06 ATAAATCAA 9 V_ALX3_02_M02943 TRANSFAC + 109745540 109745556 5.0E-06 AAGATCAATTAAATGAT 17 V_TCF3_05_M02920 TRANSFAC - 109747049 109747063 8.0E-06 AGGGAAATTTAAAAA 15 V_ZIC1_05_M02939 TRANSFAC + 109748374 109748388 5.0E-06 CTTCGCAGCAGGCAG 15 V_SPIB_03_M02076 TRANSFAC + 109745556 109745565 5.0E-06 TGAGGAAGTG 10 V_NANOG_02_M01247 TRANSFAC - 109748412 109748431 4.0E-06 TTAAAAAAAAAAAAACAGTC 20 V_NANOG_02_M01247 TRANSFAC - 109748413 109748432 3.0E-06 TTTAAAAAAAAAAAAACAGT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.