Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TPH2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 121278 tryptophan hydroxylase 2 chr12 + 72327625 - 72333125 72332625 Transcription Factor Binding Sites   Download all TFBS in the TPH2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints EOMES_TBX_DBD_dimeric_20_1 SELEX + 72329542 72329561 6.0E-06 TTACACATAGCTAGGAGTGA 20 SOX21_HMG_DBD_dimeric_15_1 SELEX + 72332775 72332789 8.0E-06 AGCAATGATGATGTT 15 STAT1_MA0137.2 JASPAR + 72332787 72332801 3.0E-06 GTTTTCCAGTAAATA 15 STAT1_MA0137.2 JASPAR - 72332787 72332801 6.0E-06 TATTTACTGGAAAAC 15 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 72332571 72332583 7.0E-06 GACTGATGCAAGA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX - 72332571 72332584 5.0E-06 AGACTGATGCAAGA 14 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 72332786 72332802 7.0E-06 TGTTTTCCAGTAAATAC 17 SOX9_HMG_full_dimeric_16_3 SELEX + 72332577 72332592 1.0E-06 ATCAGTCTCCAGTCAT 16 INSM1_MA0155.1 JASPAR + 72336218 72336229 5.0E-06 TGTTTGGGGGCA 12 MEIS2_MEIS_DBD_dimeric_14_1 SELEX + 72336240 72336253 8.0E-06 ATGAGAGCTGTTAA 14 MEIS2_MEIS_DBD_dimeric_14_1 SELEX - 72336240 72336253 8.0E-06 TTAACAGCTCTCAT 14 NFE2L2_MA0150.1 JASPAR - 72329466 72329476 2.0E-06 ATGATTCAGCA 11 V_FOXP1_01_M00987 TRANSFAC + 72329581 72329600 9.0E-06 AACTTTATGTTTTGCATTTT 20 V_GATA1_Q6_M02004 TRANSFAC + 72336248 72336262 3.0E-06 TGTTAAGATAAGGAA 15 V_HMGIY_Q3_M01010 TRANSFAC + 72336209 72336223 3.0E-06 AATGCATTTTGTTTG 15 V_OCT1_Q5_01_M00930 TRANSFAC + 72329588 72329598 4.0E-06 TGTTTTGCATT 11 V_GABPA_04_M02858 TRANSFAC - 72336294 72336309 8.0E-06 CTATCTTTCCACTGCA 16 V_LYF1_01_M00141 TRANSFAC - 72329618 72329626 9.0E-06 TTTGGGAAA 9 V_HNF1_C_M00206 TRANSFAC - 72336352 72336368 5.0E-06 AGCTAGTGTTTAGCCAA 17 V_SOX8_04_M02912 TRANSFAC + 72332589 72332602 2.0E-06 TCATTCATATAAAG 14 V_AP1_Q6_01_M00925 TRANSFAC - 72329567 72329575 2.0E-06 ATGACTCAA 9 V_RXRA_04_M02895 TRANSFAC - 72329488 72329503 3.0E-06 TCACAAAGGTAAAACT 16 V_HNF1_Q6_01_M01011 TRANSFAC + 72329567 72329587 7.0E-06 TTGAGTCATACAGTAACTTTA 21 V_CMYB_01_M00004 TRANSFAC + 72336311 72336328 4.0E-06 TGCAATTGCAGTTAGGGG 18 V_REST_01_M01256 TRANSFAC - 72332643 72332664 1.0E-05 TTGGGGCGCTGTCCAGAACCCT 22 V_HBP1_03_M02762 TRANSFAC - 72332584 72332599 3.0E-06 TATATGAATGACTGGA 16 V_BRACH_01_M00150 TRANSFAC + 72329542 72329565 3.0E-06 TTACACATAGCTAGGAGTGAAATT 24 V_INSM1_01_M02268 TRANSFAC + 72336218 72336229 5.0E-06 TGTTTGGGGGCA 12 V_BLIMP1_Q6_M01066 TRANSFAC + 72329552 72329567 5.0E-06 CTAGGAGTGAAATTGT 16 V_ISGF4G_04_M02875 TRANSFAC - 72329582 72329595 9.0E-06 GCAAAACATAAAGT 14 V_OCT_Q6_M00795 TRANSFAC + 72329588 72329598 7.0E-06 TGTTTTGCATT 11 V_SOX17_04_M02904 TRANSFAC + 72332585 72332601 5.0E-06 CCAGTCATTCATATAAA 17 V_MAF_Q6_01_M00983 TRANSFAC + 72329565 72329575 1.0E-06 TGTTGAGTCAT 11 V_GCNF_01_M00526 TRANSFAC + 72336373 72336390 8.0E-06 CTTAGGTTCAATTTCTTT 18 V_ZFP105_04_M02931 TRANSFAC - 72329559 72329575 5.0E-06 ATGACTCAACAATTTCA 17 V_HOXB7_01_M01396 TRANSFAC - 72332790 72332805 1.0E-05 CCAGTATTTACTGGAA 16 V_AP1_Q4_01_M00926 TRANSFAC + 72329568 72329575 1.0E-05 TGAGTCAT 8 V_POU5F1_01_M01307 TRANSFAC - 72329589 72329598 9.0E-06 AATGCAAAAC 10 V_FAC1_01_M00456 TRANSFAC - 72329584 72329597 4.0E-06 ATGCAAAACATAAA 14 V_GATA1_04_M00128 TRANSFAC + 72336250 72336262 3.0E-06 TTAAGATAAGGAA 13 V_FOXL1_02_M02857 TRANSFAC - 72329583 72329598 3.0E-06 AATGCAAAACATAAAG 16 V_OCT1_Q6_M00195 TRANSFAC - 72329587 72329601 7.0E-06 CAAAATGCAAAACAT 15 V_FRA1_Q5_M01267 TRANSFAC + 72329568 72329575 1.0E-05 TGAGTCAT 8 V_NRF2_Q4_M00821 TRANSFAC + 72329564 72329576 5.0E-06 TTGTTGAGTCATA 13 V_STAT1STAT1_Q3_M01212 TRANSFAC + 72332788 72332800 6.0E-06 TTTTCCAGTAAAT 13 V_NFE2_Q6_M02104 TRANSFAC - 72329561 72329576 5.0E-06 TATGACTCAACAATTT 16 V_NFE2L2_01_M02263 TRANSFAC - 72329466 72329476 2.0E-06 ATGATTCAGCA 11 V_SOX5_07_M02909 TRANSFAC + 72329557 72329573 7.0E-06 AGTGAAATTGTTGAGTC 17 V_TCF11MAFG_01_M00284 TRANSFAC - 72329559 72329580 1.0E-06 ACTGTATGACTCAACAATTTCA 22 V_STAT1_05_M01260 TRANSFAC - 72332780 72332801 7.0E-06 TATTTACTGGAAAACATCATCA 22 V_STAT1_05_M01260 TRANSFAC + 72332787 72332808 6.0E-06 GTTTTCCAGTAAATACTGGGCA 22

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.