Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C12orf45 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 121053 chromosome 12 open reading frame 45 chr12 + 105375097 - 105380597 105380097 Transcription Factor Binding Sites   Download all TFBS in the C12orf45 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX - 105380658 105380668 8.0E-06 TGGGTGTGAAA 11 CTCF_MA0139.1 JASPAR + 105379172 105379190 1.0E-06 TGACCACGAGGTGGAAGCA 19 HNF1B_MA0153.1 JASPAR + 105380787 105380798 1.0E-06 CTAGTAATTAAC 12 PDX1_homeodomain_DBD_monomeric_8_1 SELEX + 105380790 105380797 5.0E-06 GTAATTAA 8 Pax4_MA0068.1 JASPAR - 105379228 105379257 5.0E-06 GAATAATATGCCATTGTATGTATATACCAC 30 Pax4_MA0068.1 JASPAR - 105379308 105379337 4.0E-06 TACTAATTTCACTTAAAATAATACCCTCAA 30 HOXA1_homeodomain_DBD_monomeric_10_1 SELEX + 105380789 105380798 1.0E-06 AGTAATTAAC 10 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX + 105380789 105380798 7.0E-06 AGTAATTAAC 10 LEF1_HMG_DBD_monomeric_15_1 SELEX + 105379207 105379221 5.0E-06 AGAGATCAATGGTAA 15 Dlx2_homeodomain_DBD_monomeric_8_1 SELEX + 105380790 105380797 5.0E-06 GTAATTAA 8 Hoxa2_homeodomain_DBD_monomeric_10_1 SELEX + 105380789 105380798 2.0E-06 AGTAATTAAC 10 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX + 105380789 105380798 1.0E-06 AGTAATTAAC 10 EMX1_homeodomain_DBD_monomeric_10_1 SELEX + 105380789 105380798 5.0E-06 AGTAATTAAC 10 SP1_MA0079.2 JASPAR + 105380067 105380076 7.0E-06 CCCCGCCCCC 10 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX + 105380789 105380798 1.0E-06 AGTAATTAAC 10 VAX1_homeodomain_DBD_monomeric_8_1 SELEX - 105380790 105380797 9.0E-06 TTAATTAC 8 TBX2_TBX_full_monomeric_11_1 SELEX - 105380658 105380668 6.0E-06 TGGGTGTGAAA 11 Hoxd3_homeodomain_DBD_monomeric_10_1 SELEX + 105380789 105380798 1.0E-06 AGTAATTAAC 10 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX + 105380789 105380798 2.0E-06 AGTAATTAAC 10 FEV_MA0156.1 JASPAR + 105380717 105380724 1.0E-05 CAGGAAAT 8 VAX2_homeodomain_DBD_monomeric_8_1 SELEX - 105380790 105380797 5.0E-06 TTAATTAC 8 MEOX1_homeodomain_full_monomeric_10_1 SELEX + 105380789 105380798 1.0E-06 AGTAATTAAC 10 NR3C1_MA0113.1 JASPAR + 105379729 105379746 9.0E-06 AAGATGAAAATGATCTAG 18 MNX1_homeodomain_DBD_monomeric_10_1 SELEX + 105380789 105380798 6.0E-06 AGTAATTAAC 10 FOXL1_MA0033.1 JASPAR + 105379234 105379241 5.0E-06 TATACATA 8 HNF1A_MA0046.1 JASPAR - 105379327 105379340 5.0E-06 TGTTACTAATTTCA 14 Meox2_homeodomain_DBD_monomeric_8_1 SELEX - 105380790 105380797 9.0E-06 TTAATTAC 8 V_CDP_03_M01342 TRANSFAC - 105380786 105380802 3.0E-06 ACCAGTTAATTACTAGT 17 V_CEBPG_Q6_M00622 TRANSFAC - 105379318 105379330 8.0E-06 TTCACTTAAAATA 13 RXR_RAR_DR5_MA0159.1 JASPAR + 105380244 105380260 6.0E-06 AGGTGACGGACGGGTGA 17 V_MSX3_01_M01341 TRANSFAC + 105380785 105380800 9.0E-06 CACTAGTAATTAACTG 16 V_DBX1_01_M01483 TRANSFAC - 105380784 105380800 4.0E-06 CAGTTAATTACTAGTGG 17 V_ZFP410_04_M02936 TRANSFAC + 105380015 105380031 6.0E-06 TCTCTCCGCTCCTTACT 17 V_MAX_Q6_M01830 TRANSFAC + 105380273 105380284 5.0E-06 CCGCACACGTGC 12 V_DMRT3_01_M01148 TRANSFAC - 105379330 105379344 2.0E-06 TTTTTGTTACTAATT 15 V_IRF_Q6_01_M00972 TRANSFAC - 105379940 105379950 6.0E-06 GAAAAAGAAAG 11 V_HOXA4_01_M01370 TRANSFAC + 105380785 105380801 1.0E-06 CACTAGTAATTAACTGG 17 V_HOXD1_01_M01448 TRANSFAC + 105380786 105380802 1.0E-06 ACTAGTAATTAACTGGT 17 V_HOXC4_01_M01369 TRANSFAC - 105380785 105380801 6.0E-06 CCAGTTAATTACTAGTG 17 V_CUX1_03_M02958 TRANSFAC - 105380786 105380802 3.0E-06 ACCAGTTAATTACTAGT 17 V_SP1_03_M02281 TRANSFAC + 105380067 105380076 7.0E-06 CCCCGCCCCC 10 V_HOXC6_01_M01406 TRANSFAC - 105380785 105380801 2.0E-06 CCAGTTAATTACTAGTG 17 V_NKX24_01_M01350 TRANSFAC - 105381179 105381194 6.0E-06 CAGACTACTTGAATTC 16 V_SP1_02_M01303 TRANSFAC - 105380065 105380075 3.0E-06 GGGGCGGGGAG 11 V_LHX3A_01_M00510 TRANSFAC - 105380790 105380799 7.0E-06 AGTTAATTAC 10 V_K2B_01_M01348 TRANSFAC + 105380786 105380802 4.0E-06 ACTAGTAATTAACTGGT 17 V_NR3C1_01_M02219 TRANSFAC + 105379729 105379746 9.0E-06 AAGATGAAAATGATCTAG 18 V_TCFAP2E_04_M02926 TRANSFAC - 105379315 105379328 8.0E-06 CACTTAAAATAATA 14 V_MEF2A_Q6_M02024 TRANSFAC + 105379318 105379327 6.0E-06 TATTTTAAGT 10 V_RPC155_01_M01798 TRANSFAC + 105380763 105380778 0.0E+00 GCACGAGTTCGAATCC 16 V_CRX_Q4_M00623 TRANSFAC - 105379326 105379338 1.0E-06 TTACTAATTTCAC 13 V_HOXA6_01_M01392 TRANSFAC - 105380785 105380800 6.0E-06 CAGTTAATTACTAGTG 16 V_ZFP105_03_M02827 TRANSFAC + 105379768 105379782 5.0E-06 TACAACTAAAAATGG 15 V_HNF1_Q6_M00790 TRANSFAC - 105379324 105379341 5.0E-06 TTGTTACTAATTTCACTT 18 V_HOXA3_02_M01337 TRANSFAC - 105380789 105380802 6.0E-06 ACCAGTTAATTACT 14 V_DOBOX4_01_M01359 TRANSFAC - 105379225 105379241 3.0E-06 TATGTATATACCACATT 17 V_SP4_03_M02810 TRANSFAC + 105380065 105380081 1.0E-06 CTCCCCGCCCCCTTACC 17 V_CEBPB_02_M00117 TRANSFAC - 105379720 105379733 1.0E-06 ATCTTGCAAAACTG 14 V_HNF1B_04_M02266 TRANSFAC + 105380787 105380798 1.0E-06 CTAGTAATTAAC 12 V_NKX22_02_M01372 TRANSFAC - 105381178 105381194 8.0E-06 CAGACTACTTGAATTCA 17 V_MEF2_03_M00232 TRANSFAC - 105379312 105379333 3.0E-06 AATTTCACTTAAAATAATACCC 22 V_IRF3_06_M02871 TRANSFAC - 105379934 105379947 9.0E-06 AAAGAAAGGTTCAG 14 V_MEF2_04_M00233 TRANSFAC - 105379312 105379333 0.0E+00 AATTTCACTTAAAATAATACCC 22 V_CTCF_02_M01259 TRANSFAC + 105379169 105379188 1.0E-06 CAATGACCACGAGGTGGAAG 20 V_CTCF_01_M01200 TRANSFAC + 105379171 105379190 1.0E-06 ATGACCACGAGGTGGAAGCA 20 V_SOX9_B1_M00410 TRANSFAC + 105379207 105379220 7.0E-06 AGAGATCAATGGTA 14 V_HOXB4_01_M01424 TRANSFAC - 105380785 105380801 5.0E-06 CCAGTTAATTACTAGTG 17 V_NEUROD_02_M01288 TRANSFAC + 105380685 105380696 3.0E-06 GTGCTGCTGTCT 12 V_SP4_Q5_M01273 TRANSFAC + 105380066 105380076 9.0E-06 TCCCCGCCCCC 11 V_HOXA7_02_M01336 TRANSFAC - 105380785 105380801 3.0E-06 CCAGTTAATTACTAGTG 17 V_NKX25_03_M01414 TRANSFAC - 105381179 105381194 6.0E-06 CAGACTACTTGAATTC 16 V_HIF1_Q3_M00797 TRANSFAC + 105380275 105380288 3.0E-06 GCACACGTGCGGCA 14 V_HOXB8_01_M01451 TRANSFAC + 105380786 105380801 6.0E-06 ACTAGTAATTAACTGG 16 V_IPF1_01_M01233 TRANSFAC - 105380790 105380799 1.0E-05 AGTTAATTAC 10 V_AIRE_01_M00999 TRANSFAC + 105379772 105379797 0.0E+00 ACTAAAAATGGTTAAGATGGTAGATT 26 V_BDP1_01_M01796 TRANSFAC - 105380767 105380778 0.0E+00 GGATTCGAACTC 12 V_ASCL2_04_M02841 TRANSFAC + 105380063 105380078 5.0E-06 CTCTCCCCGCCCCCTT 16 V_BARX2_01_M01431 TRANSFAC - 105380785 105380800 6.0E-06 CAGTTAATTACTAGTG 16 V_STAT6_02_M00500 TRANSFAC - 105380718 105380725 1.0E-05 GATTTCCT 8 V_HOXC5_01_M01454 TRANSFAC - 105380785 105380801 3.0E-06 CCAGTTAATTACTAGTG 17 V_RXR_RAR_01_M02272 TRANSFAC + 105380244 105380260 6.0E-06 AGGTGACGGACGGGTGA 17 V_SATB1_01_M01232 TRANSFAC + 105380785 105380796 8.0E-06 CACTAGTAATTA 12 V_SP1_Q2_01_M00933 TRANSFAC + 105380067 105380076 4.0E-06 CCCCGCCCCC 10 V_HMX3_02_M01413 TRANSFAC + 105380786 105380802 9.0E-06 ACTAGTAATTAACTGGT 17 V_ZFP128_04_M02932 TRANSFAC + 105379230 105379243 2.0E-06 GGTATATACATACA 14 V_ZFP128_04_M02932 TRANSFAC - 105379230 105379243 1.0E-06 TGTATGTATATACC 14 V_ZFP128_04_M02932 TRANSFAC + 105379232 105379245 6.0E-06 TATATACATACAAT 14 V_SP1_Q4_01_M00932 TRANSFAC - 105380065 105380077 5.0E-06 AGGGGGCGGGGAG 13 V_HNF1A_01_M02162 TRANSFAC - 105379327 105379340 5.0E-06 TGTTACTAATTTCA 14 V_BRF1_01_M01747 TRANSFAC + 105380767 105380779 0.0E+00 GAGTTCGAATCCC 13 V_FEV_01_M02269 TRANSFAC + 105380717 105380724 1.0E-05 CAGGAAAT 8 V_GLIS2_04_M02863 TRANSFAC + 105379331 105379344 9.0E-06 ATTAGTAACAAAAA 14 V_SMAD1_01_M01590 TRANSFAC - 105379938 105379949 7.0E-06 AAAAAGAAAGGT 12 V_DMRT5_01_M01150 TRANSFAC - 105379329 105379343 2.0E-06 TTTTGTTACTAATTT 15 V_NKX21_01_M01312 TRANSFAC - 105381179 105381194 9.0E-06 CAGACTACTTGAATTC 16 V_IPF1_06_M01438 TRANSFAC + 105380787 105380802 8.0E-06 CTAGTAATTAACTGGT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.