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CLN5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1203 ceroid-lipofuscinosis, neuronal 5 chr13 + 77561058 - 77566558 77566058 Transcription Factor Binding Sites   Download all TFBS in the CLN5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 77565972 77565987 9.0E-06 ATTCATAAAAGATGAC 16 NF-kappaB_MA0061.1 JASPAR + 77566875 77566884 6.0E-06 GGGACTTCCC 10 NF-kappaB_MA0061.1 JASPAR - 77566913 77566922 9.0E-06 GGGGATTCCC 10 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX + 77565892 77565905 5.0E-06 GGGGTAAAAGTTCG 14 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 77566759 77566770 7.0E-06 GATATAAATAAA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX - 77566756 77566768 6.0E-06 TATAAATAAATGC 13 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 77565892 77565905 8.0E-06 GGGGTAAAAGTTCG 14 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 77566759 77566770 2.0E-06 GATATAAATAAA 12 IRF7_IRF_DBD_trimeric_17_1 SELEX - 77565925 77565941 8.0E-06 AAACCAAAAATCTGTCA 17 POU4F3_POU_DBD_monomeric_16_1 SELEX + 77565972 77565987 8.0E-06 ATTCATAAAAGATGAC 16 Tcfcp2l1_MA0145.1 JASPAR - 77566834 77566847 6.0E-06 CAGGTTCAAACCAG 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 77566757 77566767 9.0E-06 ATAAATAAATG 11 MEF2A_MA0052.1 JASPAR + 77566760 77566769 1.0E-05 TTATTTATAT 10 FOXI1_MA0042.1 JASPAR + 77566758 77566769 5.0E-06 ATTTATTTATAT 12 ETV4_ETS_DBD_monomeric_10_1 SELEX + 77566210 77566219 5.0E-06 TCCGGAAGTA 10 SRY_MA0084.1 JASPAR + 77568565 77568573 7.0E-06 GTTAACAAT 9 znf143_MA0088.1 JASPAR + 77568659 77568678 5.0E-06 TCCCACCCACAGTTCCATGA 20 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 77566833 77566848 2.0E-06 TCTGGTTTGAACCTGA 16 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 77566757 77566767 7.0E-06 ATAAATAAATG 11 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 77566671 77566685 1.0E-05 AGAAAAGGAGAGTAA 15 ELK1_ETS_full_monomeric_10_1 SELEX + 77566210 77566219 9.0E-06 TCCGGAAGTA 10 Pou5f1_MA0142.1 JASPAR - 77568669 77568683 8.0E-06 CTTTCTCATGGAACT 15 SOX21_HMG_DBD_dimeric_16_1 SELEX - 77566743 77566758 9.0E-06 TGCGATAGACAGTGTT 16 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 77565683 77565693 1.0E-05 TTTCCCCACTA 11 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX + 77565892 77565905 3.0E-06 GGGGTAAAAGTTCG 14 Elk3_ETS_DBD_monomeric_10_1 SELEX + 77566210 77566219 9.0E-06 TCCGGAAGTA 10 IRF5_IRF_full_dimeric_14_1 SELEX - 77565931 77565944 2.0E-06 CCAAAACCAAAAAT 14 Sox2_MA0143.1 JASPAR - 77568670 77568684 1.0E-05 CCTTTCTCATGGAAC 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 77566757 77566769 1.0E-06 ATATAAATAAATG 13 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX + 77565892 77565905 8.0E-06 GGGGTAAAAGTTCG 14 V_AP2ALPHA_Q6_M01857 TRANSFAC + 77567065 77567075 6.0E-06 AGCCTCCGGCG 11 V_NFKB_C_M00208 TRANSFAC + 77566874 77566885 2.0E-06 TGGGACTTCCCA 12 V_FREAC7_01_M00293 TRANSFAC - 77566753 77566768 6.0E-06 TATAAATAAATGCGAT 16 V_FREAC7_01_M00293 TRANSFAC - 77566757 77566772 1.0E-06 ATGATATAAATAAATG 16 V_NFKB_Q6_01_M00774 TRANSFAC - 77566874 77566889 7.0E-06 AAACTGGGAAGTCCCA 16 V_CDX2_Q5_01_M01659 TRANSFAC + 77565973 77565983 4.0E-06 TTCATAAAAGA 11 V_APOLYA_B_M00310 TRANSFAC + 77567248 77567262 2.0E-06 AAAAAACAGCTATTT 15 V_GATA2_02_M00348 TRANSFAC - 77565647 77565656 8.0E-06 AGTGATAACA 10 V_FOXA2_04_M02749 TRANSFAC - 77566756 77566772 6.0E-06 ATGATATAAATAAATGC 17 V_NKX29_01_M01352 TRANSFAC - 77566726 77566742 9.0E-06 TTTAAACTACTCAAGAA 17 V_NKX29_01_M01352 TRANSFAC + 77566727 77566743 9.0E-06 TCTTGAGTAGTTTAAAA 17 V_POU5F1_02_M02245 TRANSFAC - 77568669 77568683 8.0E-06 CTTTCTCATGGAACT 15 V_SOX5_01_M00042 TRANSFAC + 77568566 77568575 7.0E-06 TTAACAATGA 10 V_CBF_02_M01080 TRANSFAC - 77565637 77565652 2.0E-06 ATAACAGTGGTTAACA 16 V_CBF_02_M01080 TRANSFAC - 77565730 77565745 2.0E-06 ATAACAGTGGTTAACA 16 V_MEF2_02_M00231 TRANSFAC - 77566755 77566776 8.0E-06 GTGCATGATATAAATAAATGCG 22 V_MEF2_02_M00231 TRANSFAC + 77567371 77567392 4.0E-06 CCTGAGTCAAAAAATAGGAATA 22 V_MEIS1AHOXA9_01_M00420 TRANSFAC + 77565925 77565938 1.0E-06 TGACAGATTTTTGG 14 V_NKX25_Q6_M02108 TRANSFAC - 77566401 77566411 1.0E-05 CTCACTTGTAG 11 V_FOXO3A_Q1_M01137 TRANSFAC - 77566757 77566768 1.0E-06 TATAAATAAATG 12 V_GABPA_04_M02858 TRANSFAC - 77567274 77567289 7.0E-06 ACTCCTTCCCACTCAT 16 V_NERF_Q2_M00531 TRANSFAC - 77566296 77566313 8.0E-06 CACCAGGAAGCGCGTCCC 18 V_SP1_02_M01303 TRANSFAC + 77566472 77566482 8.0E-06 GGGGCGGGGAC 11 V_MEF2A_Q6_M02024 TRANSFAC + 77566761 77566770 6.0E-06 TATTTATATC 10 V_SRF_C_M00215 TRANSFAC - 77566864 77566878 7.0E-06 TCCCAATAAGGACTT 15 V_CP2_02_M00947 TRANSFAC + 77566833 77566847 2.0E-06 TCTGGTTTGAACCTG 15 V_HMBOX1_01_M01456 TRANSFAC + 77568557 77568573 8.0E-06 CATACCTGGTTAACAAT 17 V_SOX13_03_M02797 TRANSFAC + 77566802 77566817 6.0E-06 TTTGGTACAATTTACT 16 V_POU3F2_01_M00463 TRANSFAC + 77566754 77566767 0.0E+00 TCGCATTTATTTAT 14 V_ZFP105_03_M02827 TRANSFAC - 77566682 77566696 4.0E-06 ATTAAATAACATTAC 15 V_GFI1_01_M00250 TRANSFAC - 77568562 77568585 1.0E-06 GAAGGACAAATCATTGTTAACCAG 24 V_SOX8_04_M02912 TRANSFAC + 77565970 77565983 9.0E-06 CAATTCATAAAAGA 14 V_SOX1_04_M02906 TRANSFAC - 77568564 77568578 2.0E-06 AAATCATTGTTAACC 15 V_XFD3_01_M00269 TRANSFAC + 77567373 77567386 9.0E-06 TGAGTCAAAAAATA 14 V_NFKB_Q6_M00194 TRANSFAC + 77566873 77566886 8.0E-06 TTGGGACTTCCCAG 14 V_ZF5_B_M00333 TRANSFAC + 77566294 77566306 1.0E-06 CGGGGACGCGCTT 13 V_AP2BETA_Q3_M01858 TRANSFAC - 77565808 77565823 5.0E-06 GTGCAGGGCTGGGGGT 16 V_NFKAPPAB50_01_M00051 TRANSFAC - 77566913 77566922 2.0E-06 GGGGATTCCC 10 V_CETS1P54_01_M00032 TRANSFAC + 77566210 77566219 1.0E-05 TCCGGAAGTA 10 V_SRF_Q5_02_M01007 TRANSFAC + 77566863 77566881 9.0E-06 GAAGTCCTTATTGGGACTT 19 V_STAF_02_M00264 TRANSFAC + 77568660 77568680 3.0E-06 CCCACCCACAGTTCCATGAGA 21 V_TBP_06_M02814 TRANSFAC + 77566757 77566772 7.0E-06 CATTTATTTATATCAT 16 V_TBP_06_M02814 TRANSFAC - 77566757 77566772 1.0E-06 ATGATATAAATAAATG 16 V_NKX23_01_M01457 TRANSFAC - 77565689 77565704 6.0E-06 CCCCAAGTGCTTAGTG 16 V_HFH8_01_M00294 TRANSFAC + 77566758 77566770 6.0E-06 ATTTATTTATATC 13 V_CIZ_01_M00734 TRANSFAC + 77567378 77567386 6.0E-06 CAAAAAATA 9 V_TBP_01_M00471 TRANSFAC - 77566761 77566768 4.0E-06 TATAAATA 8 V_TTF1_Q5_M02034 TRANSFAC + 77566549 77566562 2.0E-06 GCGCACTTGAGAGC 14 V_OSR2_04_M02889 TRANSFAC - 77566710 77566725 3.0E-06 ATCAGCTACTTGTACC 16 V_FOXL1_04_M02753 TRANSFAC - 77566756 77566772 1.0E-06 ATGATATAAATAAATGC 17 V_NKX3A_02_M01383 TRANSFAC - 77566726 77566742 9.0E-06 TTTAAACTACTCAAGAA 17 V_T3R_Q6_M00963 TRANSFAC - 77565960 77565968 7.0E-06 CCTGTCCTT 9 V_ZBTB4_04_M02929 TRANSFAC - 77565720 77565735 7.0E-06 TTAACACTGACAATAT 16 V_FPM315_01_M01587 TRANSFAC - 77566175 77566186 9.0E-06 GTGGGAGGAGCA 12 V_ZFP281_01_M01597 TRANSFAC + 77566456 77566466 5.0E-06 TGGGGGATGGG 11 V_OCT1_06_M00162 TRANSFAC - 77567263 77567276 5.0E-06 CATACTGTCATACA 14 V_SRF_02_M01257 TRANSFAC - 77566862 77566879 6.0E-06 GTCCCAATAAGGACTTCG 18 V_NFKAPPAB_01_M00054 TRANSFAC + 77566875 77566884 7.0E-06 GGGACTTCCC 10 V_NFKAPPAB_01_M00054 TRANSFAC - 77566913 77566922 9.0E-06 GGGGATTCCC 10 V_SOX2_01_M02246 TRANSFAC - 77568670 77568684 1.0E-05 CCTTTCTCATGGAAC 15 V_ZFP281_04_M02831 TRANSFAC - 77566454 77566468 2.0E-06 ACCCCATCCCCCATC 15 V_VDR_Q3_M00444 TRANSFAC - 77565788 77565802 1.0E-05 GAGGAAGAAGGGACA 15 V_IRF1_01_M00062 TRANSFAC - 77565931 77565943 4.0E-06 CAAAACCAAAAAT 13 V_AP2ALPHA_03_M01047 TRANSFAC + 77567063 77567077 3.0E-06 ACAGCCTCCGGCGGT 15 V_AP2ALPHA_03_M01047 TRANSFAC - 77567063 77567077 3.0E-06 ACCGCCGGAGGCTGT 15 V_ZID_01_M00085 TRANSFAC + 77567312 77567324 6.0E-06 TGGCTCTGTCATC 13 V_LTF_Q6_M01692 TRANSFAC + 77566629 77566637 1.0E-05 GTCACTTGC 9 V_FOXK1_03_M02752 TRANSFAC - 77566756 77566772 4.0E-06 ATGATATAAATAAATGC 17 V_PAX4_04_M00380 TRANSFAC - 77568674 77568703 6.0E-06 AAAAATTAAAACACTGTTCCCTTTCTCATG 30 V_SMAD1_01_M01590 TRANSFAC + 77566667 77566678 1.0E-05 AAGAAGAAAAGG 12 V_NANOG_02_M01247 TRANSFAC + 77566663 77566682 8.0E-06 GTGGAAGAAGAAAAGGAGAG 20 V_OCT4_01_M01125 TRANSFAC - 77568669 77568683 9.0E-06 CTTTCTCATGGAACT 15 V_TCF11_01_M00285 TRANSFAC - 77565975 77565987 2.0E-06 GTCATCTTTTATG 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.