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CLRN3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 119467 clarin 3 chr10 - 129690711 - 129696211 129691211 Transcription Factor Binding Sites   Download all TFBS in the CLRN3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 129688032 129688042 1.0E-06 AATGACTCATT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 129688032 129688042 2.0E-06 AATGAGTCATT 11 SOX10_HMG_full_dimeric_16_1 SELEX - 129688067 129688082 4.0E-06 CACAATGTGCTCTGTT 16 SOX21_HMG_DBD_dimeric_13_2 SELEX + 129689675 129689687 5.0E-06 AAAATGCTATTCA 13 FOXF2_MA0030.1 JASPAR + 129687918 129687931 5.0E-06 CTATCATAAACACT 14 NHLH1_MA0048.1 JASPAR + 129688429 129688440 1.0E-05 CAGCAGCTGCTC 12 SOX9_HMG_full_dimeric_16_1 SELEX - 129688067 129688082 5.0E-06 CACAATGTGCTCTGTT 16 SRY_HMG_DBD_dimeric_13_2 SELEX - 129689675 129689687 1.0E-06 TGAATAGCATTTT 13 IRX2_homeodomain_DBD_dimeric_12_1 SELEX - 129688042 129688053 3.0E-06 AAACATGACAAA 12 POU3F4_POU_DBD_monomeric_11_1 SELEX + 129688665 129688675 1.0E-05 TGAATTATTTT 11 POU1F1_POU_DBD_monomeric_14_1 SELEX + 129691194 129691207 5.0E-06 GTTATGCTAATGGA 14 SOX15_HMG_full_dimeric_15_3 SELEX - 129689674 129689688 7.0E-06 GTGAATAGCATTTTC 15 SOX15_HMG_full_dimeric_15_3 SELEX - 129692607 129692621 5.0E-06 TTCAGTAACATTCAC 15 POU2F2_POU_DBD_monomeric_11_1 SELEX + 129691195 129691205 1.0E-06 TTATGCTAATG 11 Pax4_MA0068.1 JASPAR + 129687886 129687915 2.0E-06 GAAAAAACAAAACAACAACAACAACAACAA 30 Pax4_MA0068.1 JASPAR + 129687889 129687918 6.0E-06 AAAACAAAACAACAACAACAACAACAAAAC 30 Pax4_MA0068.1 JASPAR - 129689608 129689637 3.0E-06 AACAAATTTTAAGTAAGAGACAAAACCTAC 30 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX - 129692500 129692513 1.0E-06 TTAATCATAATTTT 14 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 129689627 129689642 1.0E-06 TAAAATTTGTTAAATG 16 LEF1_HMG_DBD_monomeric_15_1 SELEX - 129693656 129693670 9.0E-06 GAACATAAAAGGAGT 15 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 129689627 129689642 1.0E-06 TAAAATTTGTTAAATG 16 POU3F3_POU_DBD_monomeric_13_1 SELEX + 129691194 129691206 7.0E-06 GTTATGCTAATGG 13 SOX2_HMG_full_dimeric_15_1 SELEX - 129689674 129689688 6.0E-06 GTGAATAGCATTTTC 15 HIC2_C2H2_DBD_monomeric_9_1 SELEX - 129691304 129691312 1.0E-05 ATGCCCACC 9 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 129688430 129688439 2.0E-06 AGCAGCTGCT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 129688430 129688439 2.0E-06 AGCAGCTGCT 10 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 129693659 129693670 7.0E-06 GAACATAAAAGG 12 SOX14_HMG_DBD_dimeric_15_1 SELEX - 129689674 129689688 4.0E-06 GTGAATAGCATTTTC 15 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 129692669 129692684 2.0E-06 CACCCACCATGCCCTT 16 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 129687622 129687638 5.0E-06 TCATGCCTGTAATTCCA 17 POU1F1_POU_DBD_monomeric_17_1 SELEX + 129692536 129692552 8.0E-06 CTTATGCATAAACCTTT 17 POU3F1_POU_DBD_monomeric_12_1 SELEX + 129691195 129691206 2.0E-06 TTATGCTAATGG 12 POU6F2_POU_full_monomeric_10_1 SELEX + 129692646 129692655 7.0E-06 GCTCATTAGA 10 JDP2_bZIP_full_dimeric_9_1 SELEX + 129688033 129688041 2.0E-06 ATGACTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 129688033 129688041 4.0E-06 ATGAGTCAT 9 Myf_MA0055.1 JASPAR - 129688429 129688440 1.0E-05 GAGCAGCTGCTG 12 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 129686291 129686306 0.0E+00 GCAGGAAAATGTAACC 16 POU2F1_POU_DBD_monomeric_12_1 SELEX + 129691194 129691205 3.0E-06 GTTATGCTAATG 12 E2F1_E2F_DBD_monomeric_14_2 SELEX + 129686248 129686261 6.0E-06 AATGGGCGCCCATG 14 E2F1_E2F_DBD_monomeric_14_2 SELEX - 129686248 129686261 5.0E-06 CATGGGCGCCCATT 14 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 129688058 129688068 2.0E-06 TTTCCTCACAC 11 SRY_HMG_DBD_dimeric_13_1 SELEX - 129692608 129692620 8.0E-06 TCAGTAACATTCA 13 IRF3_IRF_full_trimeric_21_1 SELEX + 129689584 129689604 4.0E-06 ACCATATGGAAACCAAAAAAA 21 POU3F2_POU_DBD_monomeric_12_1 SELEX + 129691195 129691206 2.0E-06 TTATGCTAATGG 12 NHLH1_bHLH_full_dimeric_10_1 SELEX + 129688430 129688439 7.0E-06 AGCAGCTGCT 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 129688430 129688439 7.0E-06 AGCAGCTGCT 10 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 129687902 129687914 5.0E-06 AACAACAACAACA 13 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX + 129689584 129689593 3.0E-06 ACCATATGGA 10 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX - 129689584 129689593 6.0E-06 TCCATATGGT 10 NFIA_NFI_full_monomeric_10_1 SELEX - 129688672 129688681 5.0E-06 AGTGCCAAAA 10 Sox1_HMG_DBD_dimeric_15_2 SELEX - 129689674 129689688 3.0E-06 GTGAATAGCATTTTC 15 Irx3_homeodomain_DBD_dimeric_12_1 SELEX - 129688042 129688053 5.0E-06 AAACATGACAAA 12 IRF2_MA0051.1 JASPAR + 129686294 129686311 6.0E-06 GGAAAATGTAACCCTTCA 18 IRX5_homeodomain_DBD_dimeric_12_1 SELEX - 129688042 129688053 3.0E-06 AAACATGACAAA 12 V_FOXP1_01_M00987 TRANSFAC - 129687896 129687915 1.0E-06 TTGTTGTTGTTGTTGTTGTT 20 V_FOXP1_01_M00987 TRANSFAC - 129687902 129687921 1.0E-06 ATAGTTTTGTTGTTGTTGTT 20 V_CDP_03_M01342 TRANSFAC - 129689556 129689572 7.0E-06 ACCAGTTGATTTCCAAT 17 V_CEBPG_Q6_M00622 TRANSFAC - 129688679 129688691 1.0E-06 CTGATTTCAAAGT 13 V_CEBPG_Q6_M00622 TRANSFAC + 129689621 129689633 6.0E-06 CTTACTTAAAATT 13 V_TGIF_01_M00418 TRANSFAC + 129688690 129688700 8.0E-06 AGCTGTCATTG 11 V_AP1_Q2_M00173 TRANSFAC + 129688032 129688042 6.0E-06 AATGACTCATT 11 V_MEIS1_02_M01419 TRANSFAC + 129688686 129688701 0.0E+00 AATCAGCTGTCATTGC 16 V_DBX1_01_M01483 TRANSFAC - 129689622 129689638 7.0E-06 TAACAAATTTTAAGTAA 17 V_PREP1_01_M01459 TRANSFAC + 129688686 129688701 1.0E-06 AATCAGCTGTCATTGC 16 V_POU3F3_01_M03090 TRANSFAC - 129692533 129692549 2.0E-06 GGTTTATGCATAAGGAT 17 V_TCFE2A_04_M02927 TRANSFAC - 129686269 129686285 4.0E-06 GAGCCCAGATGTCCGGA 17 V_TCFE2A_04_M02927 TRANSFAC - 129686318 129686334 7.0E-06 AAAGGCAGATGGCAAGT 17 V_ATF5_01_M01295 TRANSFAC - 129692511 129692521 6.0E-06 GTTCTTCCTTA 11 V_SOX40_04_M02908 TRANSFAC + 129692499 129692514 8.0E-06 TAAAATTATGATTAAG 16 V_XFD1_01_M00267 TRANSFAC + 129687920 129687933 1.0E-05 ATCATAAACACTTT 14 V_SOX14_05_M02902 TRANSFAC + 129692683 129692697 3.0E-06 TTAACACAATGAAGG 15 V_SRY_07_M02813 TRANSFAC - 129692499 129692514 8.0E-06 CTTAATCATAATTTTA 16 V_ZTA_Q2_M00711 TRANSFAC - 129692594 129692606 6.0E-06 AGACTTTGACTCA 13 V_OCTAMER_01_M01324 TRANSFAC - 129692533 129692549 2.0E-06 GGTTTATGCATAAGGAT 17 V_NFAT3_Q3_M01734 TRANSFAC - 129686293 129686302 3.0E-06 ACATTTTCCT 10 V_OCT1_01_M00135 TRANSFAC + 129691191 129691209 4.0E-06 AGGGTTATGCTAATGGACA 19 V_CEBP_01_M00159 TRANSFAC + 129692572 129692584 9.0E-06 TCTTTGGTTAGAC 13 V_POU2F3_01_M01476 TRANSFAC + 129691193 129691208 7.0E-06 GGTTATGCTAATGGAC 16 V_FOXO3A_Q1_M01137 TRANSFAC + 129687954 129687965 6.0E-06 AAAAAATAAGTT 12 V_POU3F2_02_M00464 TRANSFAC - 129689683 129689692 9.0E-06 TTATGTGAAT 10 V_POU3F2_02_M00464 TRANSFAC + 129691195 129691204 1.0E-06 TTATGCTAAT 10 V_CUX1_03_M02958 TRANSFAC - 129689556 129689572 7.0E-06 ACCAGTTGATTTCCAAT 17 V_HFH4_01_M00742 TRANSFAC + 129689627 129689639 8.0E-06 TAAAATTTGTTAA 13 V_PITX2_Q6_M02114 TRANSFAC + 129687629 129687638 9.0E-06 TGTAATTCCA 10 V_SOX21_03_M02803 TRANSFAC + 129692499 129692514 3.0E-06 TAAAATTATGATTAAG 16 V_SOX21_03_M02803 TRANSFAC - 129692499 129692514 6.0E-06 CTTAATCATAATTTTA 16 V_TCFAP2E_04_M02926 TRANSFAC + 129687948 129687961 2.0E-06 TTCTGTAAAAAATA 14 V_HNF1_C_M00206 TRANSFAC - 129688116 129688132 9.0E-06 AGTCATTCCTTTAACTC 17 V_TGIF2_01_M01407 TRANSFAC + 129688686 129688701 0.0E+00 AATCAGCTGTCATTGC 16 V_AP1_Q6_M00174 TRANSFAC + 129688032 129688042 0.0E+00 AATGACTCATT 11 V_ELF4_04_M02850 TRANSFAC + 129689593 129689609 8.0E-06 AAACCAAAAAAAACTGT 17 V_BACH1_01_M00495 TRANSFAC - 129688030 129688044 2.0E-06 AAAATGAGTCATTCA 15 V_COMP1_01_M00057 TRANSFAC + 129692572 129692595 1.0E-06 TCTTTGGTTAGACTTCTAGAAGTG 24 V_SOX7_03_M02807 TRANSFAC + 129692512 129692533 2.0E-06 AAGGAAGAACAATGCATGAACA 22 V_MEIS2_01_M01488 TRANSFAC + 129688686 129688701 1.0E-06 AATCAGCTGTCATTGC 16 V_MYF_01_M01302 TRANSFAC - 129688429 129688440 1.0E-05 GAGCAGCTGCTG 12 V_TGIF_02_M01346 TRANSFAC - 129688686 129688702 0.0E+00 AGCAATGACAGCTGATT 17 V_ZFP105_03_M02827 TRANSFAC + 129687951 129687965 7.0E-06 TGTAAAAAATAAGTT 15 V_ARID5A_03_M02736 TRANSFAC + 129687986 129687999 4.0E-06 GTAATATTTGAAAC 14 V_STAF_01_M00262 TRANSFAC + 129692667 129692688 6.0E-06 GTCACCCACCATGCCCTTAACA 22 V_XFD3_01_M00269 TRANSFAC + 129687949 129687962 8.0E-06 TCTGTAAAAAATAA 14 V_IRF2_01_M00063 TRANSFAC + 129689688 129689700 1.0E-06 CATAACTGAAAGC 13 V_AP1_Q6_01_M00925 TRANSFAC + 129688033 129688041 4.0E-06 ATGACTCAT 9 V_AP1_Q4_M00188 TRANSFAC + 129688032 129688042 8.0E-06 AATGACTCATT 11 V_FOXK1_04_M02856 TRANSFAC + 129687900 129687914 0.0E+00 ACAACAACAACAACA 15 V_FOXK1_04_M02856 TRANSFAC + 129687903 129687917 0.0E+00 ACAACAACAACAAAA 15 V_FOXK1_04_M02856 TRANSFAC + 129687906 129687920 9.0E-06 ACAACAACAAAACTA 15 V_MEF2_03_M00232 TRANSFAC - 129692488 129692509 6.0E-06 TCATAATTTTAAGATAGAAACA 22 V_ASCL2_03_M02737 TRANSFAC - 129688426 129688442 1.0E-06 CTGAGCAGCTGCTGCAT 17 V_ASCL2_03_M02737 TRANSFAC + 129688427 129688443 1.0E-06 TGCAGCAGCTGCTCAGG 17 V_ASCL2_03_M02737 TRANSFAC + 129692636 129692652 7.0E-06 TTGCCCAGCTGCTCATT 17 V_ELF5_01_M01197 TRANSFAC - 129692530 129692540 2.0E-06 ATAAGGATGTT 11 V_JUNDM2_04_M02876 TRANSFAC + 129688029 129688044 5.0E-06 GTGAATGACTCATTTT 16 V_JUNDM2_04_M02876 TRANSFAC - 129688030 129688045 9.0E-06 CAAAATGAGTCATTCA 16 V_OCT1_04_M00138 TRANSFAC + 129687942 129687964 0.0E+00 AAATGATTCTGTAAAAAATAAGT 23 V_SOX12_04_M02900 TRANSFAC - 129692545 129692560 1.0E-05 ATATGGACAAAGGTTT 16 V_TCF7_03_M02817 TRANSFAC - 129688446 129688462 5.0E-06 TTCTGTTCAAAAAAACT 17 V_AP1_C_M00199 TRANSFAC - 129688033 129688041 8.0E-06 ATGAGTCAT 9 V_STAT4_Q5_M02117 TRANSFAC - 129689532 129689541 3.0E-06 TTCAAAGAAA 10 V_TGIF1_01_M03111 TRANSFAC - 129688686 129688702 0.0E+00 AGCAATGACAGCTGATT 17 V_SOX11_03_M02795 TRANSFAC - 129692544 129692560 8.0E-06 ATATGGACAAAGGTTTA 17 V_SOX9_B1_M00410 TRANSFAC + 129692515 129692528 9.0E-06 GAAGAACAATGCAT 14 V_ISGF4G_04_M02875 TRANSFAC - 129688043 129688056 1.0E-05 GGCAAACATGACAA 14 V_AP1_Q2_01_M00924 TRANSFAC + 129688034 129688045 5.0E-06 TGACTCATTTTG 12 V_ELF1_Q6_M00746 TRANSFAC - 129691326 129691337 9.0E-06 GATTGAGGAAGT 12 V_AP1_Q4_01_M00926 TRANSFAC - 129688033 129688040 1.0E-05 TGAGTCAT 8 V_MYOD_Q6_02_M02100 TRANSFAC + 129688689 129688697 4.0E-06 CAGCTGTCA 9 V_MRG2_01_M01395 TRANSFAC + 129688686 129688701 0.0E+00 AATCAGCTGTCATTGC 16 V_FAC1_01_M00456 TRANSFAC + 129687902 129687915 9.0E-06 AACAACAACAACAA 14 V_PKNOX2_01_M01411 TRANSFAC + 129688686 129688701 1.0E-06 AATCAGCTGTCATTGC 16 V_OCT2_01_M01368 TRANSFAC + 129691193 129691208 7.0E-06 GGTTATGCTAATGGAC 16 V_PARP_Q3_M01211 TRANSFAC + 129692651 129692660 3.0E-06 TTAGAAAAAG 10 V_FRA1_Q5_M01267 TRANSFAC - 129688033 129688040 1.0E-05 TGAGTCAT 8 V_PLZF_02_M01075 TRANSFAC + 129692487 129692515 5.0E-06 TTGTTTCTATCTTAAAATTATGATTAAGG 29 V_OCT1_06_M00162 TRANSFAC + 129688039 129688052 4.0E-06 CATTTTGTCATGTT 14 V_R_01_M00273 TRANSFAC + 129693635 129693655 7.0E-06 CTGTACCCGTGATGTGGTGAT 21 V_TBX22_01_M01195 TRANSFAC + 129688025 129688043 9.0E-06 AAATGTGAATGACTCATTT 19 V_DMRT2_01_M01147 TRANSFAC - 129686296 129686311 1.0E-06 TGAAGGGTTACATTTT 16 V_SRF_06_M02916 TRANSFAC + 129687950 129687966 6.0E-06 CTGTAAAAAATAAGTTC 17 V_IRF1_01_M00062 TRANSFAC - 129689662 129689674 4.0E-06 CAAAACCAAAAAC 13 V_PIT1_Q6_M00802 TRANSFAC + 129692522 129692539 5.0E-06 AATGCATGAACATCCTTA 18 V_SRY_05_M02917 TRANSFAC + 129692513 129692529 9.0E-06 AGGAAGAACAATGCATG 17 V_MEF2_01_M00006 TRANSFAC + 129687951 129687966 4.0E-06 TGTAAAAAATAAGTTC 16 V_MEF2_01_M00006 TRANSFAC - 129688444 129688459 5.0E-06 TGTTCAAAAAAACTTC 16 V_FOXO4_01_M00472 TRANSFAC + 129687923 129687933 8.0E-06 ATAAACACTTT 11 V_TAACC_B_M00331 TRANSFAC + 129689581 129689603 6.0E-06 GACACCATATGGAAACCAAAAAA 23 V_SOX5_04_M02910 TRANSFAC + 129692502 129692516 9.0E-06 AATTATGATTAAGGA 15 V_SMAD_Q6_M00792 TRANSFAC + 129689580 129689588 3.0E-06 AGACACCAT 9 V_SOX14_03_M02798 TRANSFAC + 129692499 129692514 6.0E-06 TAAAATTATGATTAAG 16 V_SOX14_03_M02798 TRANSFAC - 129692499 129692514 6.0E-06 CTTAATCATAATTTTA 16 V_SPIB_03_M02076 TRANSFAC - 129691325 129691334 7.0E-06 TGAGGAAGTC 10

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