Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RAB3IP Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 117177 RAB3A interacting protein chr12 + 70127630 - 70133679 70133179 Transcription Factor Binding Sites   Download all TFBS in the RAB3IP promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 70133629 70133637 1.0E-05 TTTAATCCC 9 NF-kappaB_MA0061.1 JASPAR + 70133404 70133413 9.0E-06 GGGAAATTCC 10 SP3_C2H2_DBD_monomeric_11_1 SELEX + 70132563 70132573 7.0E-06 GCCACACCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 70132563 70132573 4.0E-06 GCCACACCCCC 11 LHX6_homeodomain_full_dimeric_16_1 SELEX + 70133680 70133695 0.0E+00 TAGTTAGTACTGATTA 16 LHX6_homeodomain_full_dimeric_16_1 SELEX - 70133680 70133695 0.0E+00 TAATCAGTACTAACTA 16 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 70133679 70133696 9.0E-06 GTAATCAGTACTAACTAA 18 HNF1B_MA0153.1 JASPAR - 70133124 70133135 1.0E-06 TTAATGTGTAAC 12 STAT1_MA0137.2 JASPAR - 70133710 70133724 3.0E-06 CATTTCCATGAAACT 15 Sox17_HMG_DBD_dimeric_15_1 SELEX + 70133868 70133882 9.0E-06 AACTGTTCCATTGTA 15 IRF5_IRF_full_monomeric_11_1 SELEX - 70133384 70133394 9.0E-06 CACCGAAACCT 11 GLIS1_C2H2_DBD_monomeric_16_1 SELEX + 70133541 70133556 9.0E-06 CGACCGCCCAGGAAGC 16 PITX1_homeodomain_full_monomeric_8_1 SELEX - 70133629 70133636 1.0E-05 TTAATCCC 8 OTX2_homeodomain_DBD_dimeric_15_1 SELEX - 70133623 70133637 9.0E-06 TTTAATCCCATAACA 15 OTX2_homeodomain_DBD_dimeric_15_1 SELEX - 70133849 70133863 0.0E+00 TGTAATCCTCTTATG 15 LEF1_HMG_DBD_monomeric_15_1 SELEX + 70133638 70133652 0.0E+00 AAAGATGAAAGGGTA 15 RFX2_RFX_DBD_dimeric_15_1 SELEX + 70132428 70132442 8.0E-06 GGTTCCCAGGGAAAC 15 CEBPB_bZIP_full_dimeric_10_1 SELEX - 70133826 70133835 7.0E-06 ATTATGCAAT 10 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 70133123 70133137 5.0E-06 CGTTACACATTAACT 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 70133123 70133137 5.0E-06 AGTTAATGTGTAACG 15 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 70133679 70133696 4.0E-06 TTAGTTAGTACTGATTAC 18 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 70133679 70133696 2.0E-06 GTAATCAGTACTAACTAA 18 RELA_MA0107.1 JASPAR - 70133405 70133414 3.0E-06 CGGAATTTCC 10 SP1_MA0079.2 JASPAR - 70133837 70133846 9.0E-06 CCCCTCCTCC 10 Otx1_homeodomain_DBD_dimeric_15_1 SELEX - 70133849 70133863 2.0E-06 TGTAATCCTCTTATG 15 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 70133638 70133649 1.0E-06 AAAGATGAAAGG 12 SP1_C2H2_DBD_monomeric_11_1 SELEX + 70132563 70132573 8.0E-06 GCCACACCCCC 11 SOX7_HMG_full_dimeric_17_1 SELEX - 70133859 70133875 9.0E-06 GAACAGTTTTGTTGTAA 17 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 70133825 70133836 8.0E-06 GATTGCATAATT 12 HNF1B_homeodomain_full_dimeric_13_1 SELEX + 70133124 70133136 5.0E-06 GTTACACATTAAC 13 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 70133124 70133136 6.0E-06 GTTAATGTGTAAC 13 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 70133629 70133636 1.0E-05 TTAATCCC 8 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 70132562 70132576 9.0E-06 GGCCACACCCCCCTA 15 PITX1_homeodomain_full_monomeric_9_1 SELEX - 70133629 70133637 4.0E-06 TTTAATCCC 9 EN1_homeodomain_full_dimeric_14_1 SELEX + 70133824 70133837 2.0E-06 TGATTGCATAATTG 14 Tp53_p53l_DBD_dimeric_17_1 SELEX + 70133256 70133272 9.0E-06 ACAAGTCGGAAGCAGCT 17 ETS1_ETS_full_dimeric_18_1 SELEX - 70132509 70132526 8.0E-06 GGCGGACGCGCTTCCGCG 18 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 70133123 70133137 4.0E-06 CGTTACACATTAACT 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 70133123 70133137 7.0E-06 AGTTAATGTGTAACG 15 V_NFKAPPAB65_01_M00052 TRANSFAC - 70133405 70133414 3.0E-06 CGGAATTTCC 10 V_TCF3_01_M01594 TRANSFAC - 70133637 70133649 7.0E-06 CCTTTCATCTTTT 13 V_LEF1_04_M02774 TRANSFAC - 70133637 70133653 3.0E-06 TTACCCTTTCATCTTTT 17 V_POU3F3_01_M03090 TRANSFAC + 70133822 70133838 8.0E-06 AATGATTGCATAATTGG 17 V_OBOX1_01_M01450 TRANSFAC + 70133624 70133640 3.0E-06 GTTATGGGATTAAAAAA 17 V_CEBP_Q3_M00770 TRANSFAC - 70133826 70133837 7.0E-06 CAATTATGCAAT 12 V_MAFB_03_M02879 TRANSFAC + 70133824 70133838 7.0E-06 TGATTGCATAATTGG 15 V_SP1_Q6_01_M00931 TRANSFAC - 70132548 70132557 4.0E-06 GGGGCGGGGC 10 V_OCTAMER_01_M01324 TRANSFAC + 70133822 70133838 8.0E-06 AATGATTGCATAATTGG 17 V_CEBP_Q2_M00190 TRANSFAC + 70133824 70133837 1.0E-06 TGATTGCATAATTG 14 V_AP2_Q6_01_M00915 TRANSFAC + 70132522 70132534 0.0E+00 CCGCCCCCAGGCC 13 V_SP1_03_M02281 TRANSFAC - 70133837 70133846 9.0E-06 CCCCTCCTCC 10 V_P50RELAP65_Q5_01_M01224 TRANSFAC - 70133402 70133413 0.0E+00 GGAATTTCCCAC 12 V_SPZ1_01_M00446 TRANSFAC - 70132563 70132577 1.0E-05 GTAGGGGGGTGTGGC 15 V_PITX2_Q6_M02114 TRANSFAC - 70133628 70133637 3.0E-06 TTTAATCCCA 10 V_BRN2_01_M00145 TRANSFAC + 70133874 70133889 2.0E-06 TCCATTGTAAATCAGT 16 V_CRX_Q4_M00623 TRANSFAC - 70133627 70133639 1.0E-06 TTTTTAATCCCAT 13 V_TCF3_04_M02816 TRANSFAC + 70133637 70133653 3.0E-06 AAAAGATGAAAGGGTAA 17 V_CEBPE_Q6_M01868 TRANSFAC + 70133822 70133835 3.0E-06 AATGATTGCATAAT 14 Ddit3_Cebpa_MA0019.1 JASPAR - 70133499 70133510 6.0E-06 CCATGCAATCCC 12 V_CEBPD_Q6_M00621 TRANSFAC + 70133825 70133836 3.0E-06 GATTGCATAATT 12 V_CEBPB_02_M00117 TRANSFAC + 70133824 70133837 0.0E+00 TGATTGCATAATTG 14 V_SP1_Q6_M00196 TRANSFAC - 70132547 70132559 6.0E-06 CAGGGGCGGGGCG 13 V_HNF1B_04_M02266 TRANSFAC - 70133124 70133135 1.0E-06 TTAATGTGTAAC 12 V_BCL6_Q3_M01171 TRANSFAC + 70132259 70132268 5.0E-06 GGTTCTAGGA 10 V_GADP_01_M01258 TRANSFAC + 70132630 70132641 5.0E-06 CGCTTCCGGCGC 12 V_MUSCLE_INI_B_M00321 TRANSFAC - 70133022 70133042 9.0E-06 TCCCCCCCACACGCCGCCCCC 21 V_TCF7_03_M02817 TRANSFAC + 70133637 70133653 4.0E-06 AAAAGATGAAAGGGTAA 17 V_HIC1_02_M01072 TRANSFAC - 70133108 70133122 9.0E-06 CGCCCGTGCCCGGGG 15 V_LMO2COM_01_M00277 TRANSFAC + 70132912 70132923 1.0E-06 CGGCAGGTGCAG 12 V_ICSBP_Q6_M00699 TRANSFAC - 70133314 70133325 9.0E-06 GACACGAAACCA 12 V_SP4_Q5_M01273 TRANSFAC + 70132548 70132558 8.0E-06 GCCCCGCCCCT 11 V_PTF1BETA_Q6_M00657 TRANSFAC - 70132796 70132809 1.0E-05 GAAGAACCCACCGC 14 V_OTX2_Q3_M01719 TRANSFAC + 70133626 70133638 1.0E-06 TATGGGATTAAAA 13 V_HBP1_04_M02866 TRANSFAC + 70133870 70133886 9.0E-06 CTGTTCCATTGTAAATC 17 V_ZIC2_05_M02940 TRANSFAC + 70133596 70133610 7.0E-06 AGTCGCAGCATGTGA 15 V_MYOD_Q6_01_M00929 TRANSFAC + 70132909 70132926 2.0E-06 CCGCGGCAGGTGCAGGTG 18 V_HNF1_01_M00132 TRANSFAC - 70133123 70133137 5.0E-06 AGTTAATGTGTAACG 15 V_CNOT3_01_M01253 TRANSFAC - 70133198 70133207 8.0E-06 GGCCGCGCCC 10 V_DELTAEF1_01_M00073 TRANSFAC - 70132807 70132817 1.0E-06 ACTCACCTGAA 11 V_HDX_01_M01333 TRANSFAC - 70133819 70133835 2.0E-06 ATTATGCAATCATTCCA 17 V_PITX1_01_M01484 TRANSFAC + 70133624 70133640 1.0E-06 GTTATGGGATTAAAAAA 17 V_ZFP206_01_M01742 TRANSFAC - 70132638 70132648 8.0E-06 TGCGCCTGCGC 11 V_STAT1STAT1_Q3_M01212 TRANSFAC - 70133386 70133398 5.0E-06 GTTTCACCGAAAC 13 V_NFAT2_02_M01749 TRANSFAC + 70133712 70133722 8.0E-06 TTTCATGGAAA 11 V_ZFP281_01_M01597 TRANSFAC + 70133836 70133846 7.0E-06 TGGAGGAGGGG 11 V_CEBPB_Q6_M01896 TRANSFAC - 70133825 70133834 1.0E-06 TTATGCAATC 10 V_NFKAPPAB_01_M00054 TRANSFAC + 70133404 70133413 7.0E-06 GGGAAATTCC 10 V_SOX14_04_M02901 TRANSFAC + 70133395 70133411 6.0E-06 AAACCTGGTGGGAAATT 17 V_PITX2_01_M01447 TRANSFAC + 70133625 70133641 8.0E-06 TTATGGGATTAAAAAAG 17 V_SP1_Q2_01_M00933 TRANSFAC + 70132549 70132558 7.0E-06 CCCCGCCCCT 10 V_CEBP_Q2_01_M00912 TRANSFAC + 70133826 70133837 6.0E-06 ATTGCATAATTG 12 V_SP1_Q4_01_M00932 TRANSFAC - 70132547 70132559 6.0E-06 CAGGGGCGGGGCG 13 V_OBOX5_01_M01381 TRANSFAC + 70133625 70133641 7.0E-06 TTATGGGATTAAAAAAG 17 V_CEBPE_01_M01772 TRANSFAC - 70133826 70133835 2.0E-06 ATTATGCAAT 10 V_OTX1_01_M01366 TRANSFAC + 70133625 70133641 8.0E-06 TTATGGGATTAAAAAAG 17 V_OBOX6_06_M03067 TRANSFAC - 70133625 70133641 7.0E-06 CTTTTTTAATCCCATAA 17 V_CEBPA_Q6_M01866 TRANSFAC - 70133825 70133837 9.0E-06 CAATTATGCAATC 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.