Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NXNL1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 115861 chr19 + 17566725 - 17576725 0 Transcription Factor Binding Sites   Download all TFBS in the NXNL1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX21_HMG_DBD_dimeric_15_1 SELEX + 17570031 17570045 1.0E-06 AACAATAACATTGTA 15 SOX21_HMG_DBD_dimeric_15_1 SELEX - 17570031 17570045 0.0E+00 TACAATGTTATTGTT 15 SOX4_HMG_DBD_dimeric_16_1 SELEX + 17570030 17570045 2.0E-06 TAACAATAACATTGTA 16 SRY_HMG_DBD_dimeric_15_1 SELEX + 17570031 17570045 0.0E+00 AACAATAACATTGTA 15 SRY_HMG_DBD_dimeric_15_1 SELEX - 17570031 17570045 0.0E+00 TACAATGTTATTGTT 15 SOX2_HMG_full_dimeric_17_1 SELEX + 17570030 17570046 0.0E+00 TAACAATAACATTGTAA 17 SOX2_HMG_full_dimeric_17_1 SELEX - 17570030 17570046 2.0E-06 TTACAATGTTATTGTTA 17 SOX8_HMG_full_dimeric_15_1 SELEX - 17570031 17570045 8.0E-06 TACAATGTTATTGTT 15 Sox17_HMG_DBD_dimeric_15_1 SELEX + 17570031 17570045 0.0E+00 AACAATAACATTGTA 15 Sox17_HMG_DBD_dimeric_15_1 SELEX - 17570031 17570045 0.0E+00 TACAATGTTATTGTT 15 EGR1_C2H2_full_monomeric_14_1 SELEX - 17570017 17570030 8.0E-06 ACTGCCCACGCATT 14 SCRT2_C2H2_DBD_monomeric_13_1 SELEX - 17568746 17568758 6.0E-06 ACTCAACAAGTTG 13 Sox1_HMG_DBD_dimeric_13_1 SELEX + 17570032 17570044 1.0E-06 ACAATAACATTGT 13 Sox1_HMG_DBD_dimeric_13_1 SELEX - 17570032 17570044 9.0E-06 ACAATGTTATTGT 13 SOX14_HMG_DBD_dimeric_13_1 SELEX + 17570032 17570044 0.0E+00 ACAATAACATTGT 13 SOX18_HMG_full_dimeric_15_1 SELEX + 17570031 17570045 0.0E+00 AACAATAACATTGTA 15 SOX18_HMG_full_dimeric_15_1 SELEX - 17570031 17570045 1.0E-06 TACAATGTTATTGTT 15 Egr3_C2H2_DBD_monomeric_15_1 SELEX - 17570016 17570030 3.0E-06 ACTGCCCACGCATTT 15 SOX15_HMG_full_dimeric_15_1 SELEX + 17570031 17570045 0.0E+00 AACAATAACATTGTA 15 SOX7_HMG_full_dimeric_17_1 SELEX + 17570030 17570046 0.0E+00 TAACAATAACATTGTAA 17 SOX7_HMG_full_dimeric_17_1 SELEX - 17570030 17570046 0.0E+00 TTACAATGTTATTGTTA 17 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 17568744 17568758 7.0E-06 ACTCAACAAGTTGGA 15 SOX14_HMG_DBD_dimeric_12_1 SELEX + 17570032 17570043 0.0E+00 ACAATAACATTG 12 Sox11_HMG_DBD_dimeric_15_1 SELEX + 17570031 17570045 1.0E-06 AACAATAACATTGTA 15 Sox11_HMG_DBD_dimeric_15_1 SELEX - 17570031 17570045 8.0E-06 TACAATGTTATTGTT 15 SRY_HMG_DBD_dimeric_13_1 SELEX + 17570032 17570044 0.0E+00 ACAATAACATTGT 13 Sox3_HMG_DBD_dimeric_17_1 SELEX + 17570030 17570046 0.0E+00 TAACAATAACATTGTAA 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 17570030 17570046 0.0E+00 TTACAATGTTATTGTTA 17 Sox1_HMG_DBD_dimeric_15_1 SELEX + 17570031 17570045 0.0E+00 AACAATAACATTGTA 15 Sox1_HMG_DBD_dimeric_15_1 SELEX - 17570031 17570045 1.0E-06 TACAATGTTATTGTT 15 SOX9_HMG_full_dimeric_17_1 SELEX + 17570030 17570046 4.0E-06 TAACAATAACATTGTAA 17 SOX9_HMG_full_dimeric_17_1 SELEX - 17570030 17570046 1.0E-06 TTACAATGTTATTGTTA 17 V_FOXJ2_02_M00423 TRANSFAC + 17570032 17570045 2.0E-06 ACAATAACATTGTA 14 V_GATA1_03_M00127 TRANSFAC + 17570002 17570015 5.0E-06 AAGAAGATTATGAC 14 V_SOX1_04_M02906 TRANSFAC - 17570027 17570041 1.0E-06 ATGTTATTGTTACTG 15 V_FOXK1_04_M02856 TRANSFAC + 17570029 17570043 3.0E-06 GTAACAATAACATTG 15 V_EGR1_06_M02744 TRANSFAC - 17570017 17570030 5.0E-06 ACTGCCCACGCATT 14 V_HSF1_Q6_01_M02017 TRANSFAC - 17568732 17568745 5.0E-06 GAAGTTTCTGGTCA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.