Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RASGRP4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 115727 RAS guanyl releasing protein 4 chr19 - 38916445 - 38921945 38916945 Transcription Factor Binding Sites   Download all TFBS in the RASGRP4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_15_3 SELEX - 38917085 38917099 0.0E+00 ATAAATATCAGTCAT 15 Pax6_MA0069.1 JASPAR + 38917078 38917091 4.0E-06 TTAAAGCATGACTG 14 SOX21_HMG_DBD_dimeric_13_2 SELEX - 38917086 38917098 4.0E-06 TAAATATCAGTCA 13 POU3F3_POU_DBD_monomeric_12_1 SELEX - 38917092 38917103 9.0E-06 TTACATAAATAT 12 POU3F2_POU_DBD_monomeric_13_1 SELEX - 38917092 38917104 5.0E-06 TTTACATAAATAT 13 IRF8_IRF_full_dimeric_14_1 SELEX - 38917020 38917033 9.0E-06 TCGACACCGAAAGA 14 FOXL1_forkhead_full_dimeric_13_1 SELEX - 38917092 38917104 7.0E-06 TTTACATAAATAT 13 SOX9_HMG_full_dimeric_17_3 SELEX - 38917084 38917100 0.0E+00 CATAAATATCAGTCATG 17 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 38917092 38917102 5.0E-06 TACATAAATAT 11 SOX8_HMG_full_dimeric_17_1 SELEX - 38917084 38917100 9.0E-06 CATAAATATCAGTCATG 17 SOX7_HMG_full_dimeric_17_2 SELEX - 38917084 38917100 0.0E+00 CATAAATATCAGTCATG 17 SOX15_HMG_full_dimeric_15_3 SELEX + 38917085 38917099 3.0E-06 ATGACTGATATTTAT 15 SOX15_HMG_full_dimeric_15_3 SELEX - 38917085 38917099 2.0E-06 ATAAATATCAGTCAT 15 POU2F2_POU_DBD_monomeric_11_1 SELEX + 38920461 38920471 6.0E-06 ACATGCAAATA 11 Pax4_MA0068.1 JASPAR + 38918017 38918046 8.0E-06 AAAAAAAAAAAACACACACACACATCAAAA 30 Pax4_MA0068.1 JASPAR + 38918020 38918049 3.0E-06 AAAAAAAAACACACACACACATCAAAAAAC 30 SPIB_ETS_DBD_monomeric_14_1 SELEX + 38916852 38916865 2.0E-06 GGAAAGAGGAACTG 14 NFKB2_NFAT_DBD_dimeric_13_1 SELEX + 38918072 38918084 5.0E-06 TGGGGAAGCCCCT 13 NFKB2_NFAT_DBD_dimeric_13_1 SELEX - 38918072 38918084 5.0E-06 AGGGGCTTCCCCA 13 RUNX3_RUNX_full_monomeric_10_1 SELEX + 38920418 38920427 1.0E-05 AAACCACAGA 10 Sox17_HMG_DBD_dimeric_15_2 SELEX + 38917085 38917099 3.0E-06 ATGACTGATATTTAT 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 38917085 38917099 0.0E+00 ATAAATATCAGTCAT 15 SOX2_HMG_full_dimeric_15_1 SELEX - 38917085 38917099 0.0E+00 ATAAATATCAGTCAT 15 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 38918223 38918236 4.0E-06 GTAAAAAGAAAAAA 14 SP1_MA0079.2 JASPAR + 38916926 38916935 3.0E-06 CCCCTCCCCC 10 FOXI1_MA0042.1 JASPAR + 38917090 38917101 4.0E-06 TGATATTTATGT 12 TBX4_TBX_DBD_dimeric_20_1 SELEX - 38918241 38918260 7.0E-06 AAGTGTCGAGCATGACACAT 20 SOX14_HMG_DBD_dimeric_15_1 SELEX + 38917085 38917099 8.0E-06 ATGACTGATATTTAT 15 SOX14_HMG_DBD_dimeric_15_1 SELEX - 38917085 38917099 3.0E-06 ATAAATATCAGTCAT 15 PRDM4_C2H2_full_monomeric_13_1 SELEX - 38916757 38916769 6.0E-06 TTGCAAGACCCCC 13 NFKB1_NFAT_DBD_dimeric_13_1 SELEX + 38918072 38918084 7.0E-06 TGGGGAAGCCCCT 13 NFKB1_NFAT_DBD_dimeric_13_1 SELEX - 38918072 38918084 8.0E-06 AGGGGCTTCCCCA 13 MAFG_bZIP_full_dimeric_21_1 SELEX + 38918147 38918167 9.0E-06 AAACTGCTGTCTGTGCGTTTA 21 POU2F1_POU_DBD_monomeric_12_1 SELEX + 38920460 38920471 3.0E-06 AACATGCAAATA 12 SOX18_HMG_full_dimeric_15_3 SELEX + 38917085 38917099 9.0E-06 ATGACTGATATTTAT 15 SOX18_HMG_full_dimeric_15_3 SELEX - 38917085 38917099 0.0E+00 ATAAATATCAGTCAT 15 NR3C1_MA0113.1 JASPAR + 38918194 38918211 3.0E-06 AGAAACAGACTTTTCTTT 18 Sox3_HMG_DBD_dimeric_17_3 SELEX + 38917084 38917100 6.0E-06 CATGACTGATATTTATG 17 Sox3_HMG_DBD_dimeric_17_3 SELEX - 38917084 38917100 8.0E-06 CATAAATATCAGTCATG 17 SPI1_ETS_full_monomeric_14_1 SELEX + 38916852 38916865 3.0E-06 GGAAAGAGGAACTG 14 RUNX1_MA0002.2 JASPAR - 38920418 38920428 0.0E+00 TTCTGTGGTTT 11 IRF3_IRF_full_trimeric_21_1 SELEX + 38916845 38916865 4.0E-06 TTGGGAAGGAAAGAGGAACTG 21 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 38916929 38916940 9.0E-06 CTCCCCCACACG 12 FOXO6_forkhead_DBD_dimeric_14_1 SELEX - 38918178 38918191 9.0E-06 GAGCACATGTTTAT 14 Sox1_HMG_DBD_dimeric_15_2 SELEX - 38917085 38917099 1.0E-06 ATAAATATCAGTCAT 15 RREB1_MA0073.1 JASPAR + 38916866 38916885 7.0E-06 CCCCTCCCCACCCACCCTCA 20 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 38918223 38918236 3.0E-06 GTAAAAAGAAAAAA 14 V_MTF1_01_M01242 TRANSFAC - 38917857 38917876 6.0E-06 GTGTGCATCACTACGCTCAG 20 V_FOXP1_01_M00987 TRANSFAC - 38918028 38918047 5.0E-06 TTTTTGATGTGTGTGTGTGT 20 V_CEBPG_Q6_M00622 TRANSFAC + 38917095 38917107 7.0E-06 TTTATGTAAAAAC 13 V_SPI1_01_M01203 TRANSFAC + 38916852 38916868 7.0E-06 GGAAAGAGGAACTGCCC 17 V_FREAC7_01_M00293 TRANSFAC - 38917089 38917104 0.0E+00 TTTACATAAATATCAG 16 V_AML_Q6_M00769 TRANSFAC - 38920416 38920430 1.0E-05 GTTTCTGTGGTTTGA 15 V_BCL6_Q3_01_M02085 TRANSFAC - 38918190 38918199 9.0E-06 GTTTCTAGGA 10 V_CDX2_Q5_01_M01659 TRANSFAC - 38917092 38917102 7.0E-06 TACATAAATAT 11 V_ATF5_01_M01295 TRANSFAC - 38916895 38916905 4.0E-06 CCTCTTCCTTC 11 V_HMGIY_Q3_M01010 TRANSFAC + 38918216 38918230 3.0E-06 TGTGCATTTTTTTCT 15 V_OCT1_01_M00135 TRANSFAC + 38917092 38917110 9.0E-06 ATATTTATGTAAAAACACA 19 V_OCT1_01_M00135 TRANSFAC + 38920457 38920475 9.0E-06 GATAACATGCAAATACAGA 19 V_POU2F3_01_M01476 TRANSFAC + 38920459 38920474 5.0E-06 TAACATGCAAATACAG 16 V_SP1_03_M02281 TRANSFAC + 38916926 38916935 3.0E-06 CCCCTCCCCC 10 V_OCT_C_M00210 TRANSFAC - 38920461 38920473 7.0E-06 TGTATTTGCATGT 13 V_AREB6_04_M00415 TRANSFAC - 38918193 38918201 8.0E-06 CTGTTTCTA 9 V_HOXD13_01_M01404 TRANSFAC + 38917050 38917065 9.0E-06 ACTTCAATAAAAGAAG 16 V_NR3C1_01_M02219 TRANSFAC + 38918194 38918211 3.0E-06 AGAAACAGACTTTTCTTT 18 V_TCFAP2E_04_M02926 TRANSFAC - 38918220 38918233 5.0E-06 AAAAGAAAAAAATG 14 V_TCFAP2E_04_M02926 TRANSFAC - 38918221 38918234 2.0E-06 AAAAAGAAAAAAAT 14 V_HBP1_Q2_M01661 TRANSFAC + 38917052 38917060 4.0E-06 TTCAATAAA 9 V_GC_01_M00255 TRANSFAC - 38916780 38916793 2.0E-06 AAGGGGAGGAGCTG 14 V_GC_01_M00255 TRANSFAC - 38918077 38918090 4.0E-06 ATGGGGAGGGGCTT 14 V_TCF3_04_M02816 TRANSFAC + 38918035 38918051 6.0E-06 CACACATCAAAAAACAT 17 V_DBP_Q6_01_M01872 TRANSFAC + 38917096 38917103 5.0E-06 TTATGTAA 8 V_SPI1_03_M02078 TRANSFAC + 38916856 38916865 1.0E-05 AGAGGAACTG 10 V_ZFP105_03_M02827 TRANSFAC + 38918040 38918054 1.0E-06 ATCAAAAAACATTAG 15 V_RUNX1_01_M02257 TRANSFAC - 38920418 38920428 0.0E+00 TTCTGTGGTTT 11 V_TEF_Q6_M00672 TRANSFAC + 38917092 38917103 1.0E-06 ATATTTATGTAA 12 V_ZBP89_Q4_M01816 TRANSFAC + 38916927 38916936 4.0E-06 CCCTCCCCCA 10 V_HOXA3_07_M02869 TRANSFAC + 38918043 38918056 3.0E-06 AAAAAACATTAGAG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 38916867 38916880 0.0E+00 GTGGGTGGGGAGGG 14 V_HNF1_Q6_01_M01011 TRANSFAC - 38918221 38918241 7.0E-06 TTTAGGTAAAAAGAAAAAAAT 21 V_BCL6_Q3_M01171 TRANSFAC - 38918190 38918199 1.0E-06 GTTTCTAGGA 10 V_SREBP_Q6_M01168 TRANSFAC - 38916739 38916753 4.0E-06 CTCCTCACCCCACGC 15 V_ISRE_01_M00258 TRANSFAC - 38916851 38916865 8.0E-06 CAGTTCCTCTTTCCT 15 V_OCT1_04_M00138 TRANSFAC + 38917090 38917112 1.0E-06 TGATATTTATGTAAAAACACACA 23 V_OCT1_04_M00138 TRANSFAC - 38918224 38918246 6.0E-06 ACACATTTAGGTAAAAAGAAAAA 23 V_OCT1_04_M00138 TRANSFAC + 38920455 38920477 2.0E-06 ATGATAACATGCAAATACAGACT 23 V_EVI1_Q3_M02002 TRANSFAC - 38920452 38920460 8.0E-06 TATCATGTC 9 V_SPIB_01_M01204 TRANSFAC + 38916852 38916868 3.0E-06 GGAAAGAGGAACTGCCC 17 V_TCF7_03_M02817 TRANSFAC + 38918035 38918051 3.0E-06 CACACATCAAAAAACAT 17 V_OCAB_Q6_M02113 TRANSFAC + 38920461 38920471 2.0E-06 ACATGCAAATA 11 V_OCT1_B_M00342 TRANSFAC + 38920462 38920471 3.0E-06 CATGCAAATA 10 V_PAX8_B_M00328 TRANSFAC - 38917075 38917092 9.0E-06 TCAGTCATGCTTTAAAAA 18 V_FXR_IR1_Q6_M00767 TRANSFAC - 38920302 38920314 4.0E-06 GGATTTCTGACCT 13 V_MTF1_06_M02882 TRANSFAC - 38918222 38918235 1.0E-06 TAAAAAGAAAAAAA 14 V_POU5F1_01_M01307 TRANSFAC + 38920462 38920471 6.0E-06 CATGCAAATA 10 V_TAL1_01_M01591 TRANSFAC + 38916715 38916727 8.0E-06 CTGTCTTTTCTGT 13 V_OCT2_01_M01368 TRANSFAC + 38920459 38920474 3.0E-06 TAACATGCAAATACAG 16 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 38916876 38916884 8.0E-06 GAGGGTGGG 9 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 38916980 38916988 8.0E-06 GAGGGTGGG 9 V_PLZF_02_M01075 TRANSFAC + 38917067 38917095 2.0E-06 GGCTTTTCTTTTTAAAGCATGACTGATAT 29 V_ZFP281_01_M01597 TRANSFAC - 38916926 38916936 1.0E-06 TGGGGGAGGGG 11 V_BBX_03_M02739 TRANSFAC - 38917049 38917063 6.0E-06 TCTTTTATTGAAGTA 15 V_LEF1TCF1_Q4_M00978 TRANSFAC - 38920391 38920401 9.0E-06 CCTTTGTAGTC 11 V_ZFP281_04_M02831 TRANSFAC + 38916924 38916938 5.0E-06 CCCCCCTCCCCCACA 15 V_SRF_06_M02916 TRANSFAC - 38917067 38917083 7.0E-06 CTTTAAAAAGAAAAGCC 17 V_SRF_06_M02916 TRANSFAC - 38918220 38918236 1.0E-06 GTAAAAAGAAAAAAATG 17 V_SRF_06_M02916 TRANSFAC - 38918221 38918237 1.0E-06 GGTAAAAAGAAAAAAAT 17 V_HFH3_01_M00289 TRANSFAC + 38917090 38917102 1.0E-06 TGATATTTATGTA 13 V_FOXJ2_01_M00422 TRANSFAC - 38917088 38917105 3.0E-06 TTTTACATAAATATCAGT 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 38920418 38920425 1.0E-05 TGTGGTTT 8 V_UF1H3BETA_Q6_M01068 TRANSFAC - 38916925 38916938 2.0E-06 TGTGGGGGAGGGGG 14 V_MAFK_04_M02880 TRANSFAC - 38918215 38918229 6.0E-06 GAAAAAAATGCACAC 15 V_SREBP1_Q5_M01173 TRANSFAC - 38916739 38916753 7.0E-06 CTCCTCACCCCACGC 15 V_PBX1_04_M01357 TRANSFAC + 38917046 38917062 2.0E-06 TCATACTTCAATAAAAG 17 V_PBX1_04_M01357 TRANSFAC + 38918034 38918050 0.0E+00 ACACACATCAAAAAACA 17 V_SMAD1_01_M01590 TRANSFAC - 38917068 38917079 3.0E-06 AAAAAGAAAAGC 12 V_SMAD1_01_M01590 TRANSFAC - 38918223 38918234 3.0E-06 AAAAAGAAAAAA 12 V_PAX6_01_M00097 TRANSFAC + 38917074 38917094 3.0E-06 CTTTTTAAAGCATGACTGATA 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.