Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PTPMT1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 114971 protein tyrosine phosphatase, mitochondrial 1 chr11 + 47581981 - 47587481 47586981 Transcription Factor Binding Sites   Download all TFBS in the PTPMT1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MEF2D_MADS_DBD_dimeric_12_1 SELEX + 47582187 47582198 1.0E-06 TCTAAAATTAGA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 47582230 47582242 3.0E-06 TATTAACAAACAC 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 47587722 47587734 7.0E-06 TTTAAATAAACGC 13 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 47582187 47582198 1.0E-06 TCTAAAATTAGA 12 MEF2B_MADS_full_dimeric_12_1 SELEX + 47582187 47582198 3.0E-06 TCTAAAATTAGA 12 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 47582231 47582241 7.0E-06 ATTAACAAACA 11 MEF2A_MA0052.1 JASPAR - 47582188 47582197 6.0E-06 CTAATTTTAG 10 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 47582268 47582281 9.0E-06 AAGGCATATGCATT 14 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 47582173 47582185 5.0E-06 GGATGATGAAATG 13 VENTX_homeodomain_DBD_dimeric_21_1 SELEX + 47582146 47582166 2.0E-06 TGCTAATGGGTATAGGATTTC 21 VENTX_homeodomain_DBD_dimeric_21_1 SELEX - 47582148 47582168 7.0E-06 AAGAAATCCTATACCCATTAG 21 V_CEBPG_Q6_M00622 TRANSFAC + 47587725 47587737 3.0E-06 TTTATTTAAAAGT 13 V_DBX1_01_M01483 TRANSFAC + 47582225 47582241 1.0E-05 GAGTATATTAACAAACA 17 V_IK_Q5_M01169 TRANSFAC + 47587783 47587792 3.0E-06 TTTGGGAGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 47587090 47587099 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC + 47582181 47582202 4.0E-06 AAATGCTCTAAAATTAGATATT 22 V_HFH4_01_M00742 TRANSFAC - 47582232 47582244 1.0E-06 CAGTGTTTGTTAA 13 V_PITX2_Q6_M02114 TRANSFAC + 47587769 47587778 1.0E-06 TGTAATCCCA 10 V_LYF1_01_M00141 TRANSFAC + 47587783 47587791 9.0E-06 TTTGGGAGG 9 V_CDX_Q5_M00991 TRANSFAC - 47582048 47582065 5.0E-06 TATACATGGATTCATACA 18 V_E2_Q6_M00181 TRANSFAC - 47587273 47587288 8.0E-06 GTACCAGTCCCGGTGC 16 V_FOXA2_02_M02853 TRANSFAC + 47582228 47582242 9.0E-06 TATATTAACAAACAC 15 V_HNF3G_Q4_M02015 TRANSFAC - 47582234 47582241 7.0E-06 TGTTTGTT 8 V_CEBPD_Q6_M00621 TRANSFAC - 47582174 47582185 3.0E-06 CATTTCATCATC 12 V_CEBPB_02_M00117 TRANSFAC - 47582208 47582221 3.0E-06 GGGTTGCACAACTA 14 V_ARID3A_02_M02839 TRANSFAC - 47582191 47582205 1.0E-06 ACCAATATCTAATTT 15 V_MAZ_Q6_01_M02023 TRANSFAC + 47586540 47586553 0.0E+00 AGGGGAGGGGAGGA 14 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 47582231 47582241 6.0E-06 TGTTTGTTAAT 11 V_MEF2_03_M00232 TRANSFAC + 47582181 47582202 1.0E-06 AAATGCTCTAAAATTAGATATT 22 V_OCT1_04_M00138 TRANSFAC + 47582017 47582039 0.0E+00 ATGTGTACATGAATATACAAAGA 23 V_OCT1_04_M00138 TRANSFAC + 47582051 47582073 6.0E-06 ATGAATCCATGTATATGAAATGT 23 V_SP1SP3_Q4_M01219 TRANSFAC - 47587797 47587807 5.0E-06 CCGCCTCCTCC 11 V_MEF2_04_M00233 TRANSFAC + 47582181 47582202 9.0E-06 AAATGCTCTAAAATTAGATATT 22 V_ARID3A_04_M02735 TRANSFAC + 47587722 47587738 1.0E-06 GCGTTTATTTAAAAGTT 17 V_NR1B1_Q6_M02110 TRANSFAC + 47587733 47587742 9.0E-06 AAAGTTCAAG 10 V_SP4_Q5_M01273 TRANSFAC + 47587090 47587100 2.0E-06 GCCCCGCCCCG 11 V_E2_01_M00107 TRANSFAC - 47587273 47587288 8.0E-06 GTACCAGTCCCGGTGC 16 V_GATA1_01_M00075 TRANSFAC + 47582203 47582212 3.0E-06 GGTGATAGTT 10 V_CDP_01_M00095 TRANSFAC - 47582193 47582204 8.0E-06 CCAATATCTAAT 12 V_RBPJK_01_M01112 TRANSFAC - 47586888 47586898 0.0E+00 AGCGTGGGAAA 11 V_FPM315_01_M01587 TRANSFAC + 47587791 47587802 6.0E-06 GCGGGAGGAGGA 12 V_FOXO3_01_M00477 TRANSFAC - 47582228 47582241 5.0E-06 TGTTTGTTAATATA 14 V_PITX2_Q2_M00482 TRANSFAC + 47587769 47587779 1.0E-06 TGTAATCCCAG 11 V_FOX_Q2_M00809 TRANSFAC - 47582232 47582244 7.0E-06 CAGTGTTTGTTAA 13 V_RSRFC4_01_M00026 TRANSFAC + 47582185 47582200 9.0E-06 GCTCTAAAATTAGATA 16 V_RSRFC4_01_M00026 TRANSFAC - 47582185 47582200 4.0E-06 TATCTAATTTTAGAGC 16 V_RARA_03_M02787 TRANSFAC + 47587729 47587744 3.0E-06 TTTAAAAGTTCAAGTT 16 V_NMYC_01_M00055 TRANSFAC + 47586906 47586917 6.0E-06 TCACACGTGTCT 12 V_SATB1_01_M01232 TRANSFAC - 47582142 47582153 8.0E-06 CATTAGCAATCA 12 V_P300_01_M00033 TRANSFAC + 47582134 47582147 9.0E-06 ATGGGGAGTGATTG 14 V_TCF3_05_M02920 TRANSFAC - 47582162 47582176 8.0E-06 ATCCCAAAAAGAAAT 15 V_GLIS2_04_M02863 TRANSFAC + 47582228 47582241 1.0E-06 TATATTAACAAACA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.