Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PWWP2A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 114825 PWWP domain containing 2A chr5 - 159545952 - 159551452 159546452 Transcription Factor Binding Sites   Download all TFBS in the PWWP2A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HINFP1_C2H2_full_dimeric_19_1 SELEX + 159546968 159546986 7.0E-06 GCGGACTTCTTGCGGCCGC 19 NFIA_NFI_full_dimeric_15_1 SELEX - 159546524 159546538 7.0E-06 ATGGCGAGGTGCCAG 15 PROX1_PROX_DBD_dimeric_12_1 SELEX - 159547325 159547336 3.0E-06 CAAGACTCCTTC 12 YY1_C2H2_full_monomeric_11_1 SELEX + 159546388 159546398 5.0E-06 GCCGCCATTTT 11 EWSR1-FLI1_MA0149.1 JASPAR + 159546829 159546846 3.0E-06 GGGAGAAAGGATGGAATC 18 NFIX_NFI_full_dimeric_15_2 SELEX + 159546524 159546538 5.0E-06 CTGGCACCTCGCCAT 15 NFYA_MA0060.1 JASPAR - 159546638 159546653 6.0E-06 TCTGGCCAATGAGAAG 16 SOX15_HMG_full_dimeric_15_3 SELEX - 159546949 159546963 4.0E-06 AGAAATAACATTTAT 15 E2F2_E2F_DBD_dimeric_16_1 SELEX + 159546723 159546738 5.0E-06 AAAGAGGAGCCATATA 16 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 159546948 159546961 7.0E-06 AATAAATGTTATTT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 159546948 159546961 0.0E+00 AAATAACATTTATT 14 ZNF238_C2H2_full_monomeric_13_1 SELEX + 159546646 159546658 4.0E-06 TGGCCAGATGTGT 13 ZNF238_C2H2_full_monomeric_13_1 SELEX - 159550487 159550499 4.0E-06 ATTACAGATGTGA 13 TEAD1_TEA_full_monomeric_10_1 SELEX - 159547096 159547105 5.0E-06 AACATTCCAT 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 159546778 159546787 8.0E-06 AACCATAAAA 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 159546948 159546961 0.0E+00 AAATAACATTTATT 14 Sox17_HMG_DBD_dimeric_15_2 SELEX - 159546949 159546963 8.0E-06 AGAAATAACATTTAT 15 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 159546777 159546787 8.0E-06 AACCATAAAAC 11 SP1_MA0079.2 JASPAR + 159545423 159545432 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 159546704 159546713 7.0E-06 CCCCGCCCCC 10 YY2_C2H2_full_monomeric_11_1 SELEX + 159546388 159546398 1.0E-06 GCCGCCATTTT 11 TEAD3_TEA_DBD_monomeric_8_1 SELEX - 159547097 159547104 1.0E-05 ACATTCCA 8 Stat3_MA0144.1 JASPAR + 159547319 159547328 1.0E-06 TTCCAGGAAG 10 NFIB_NFI_full_dimeric_15_1 SELEX - 159546524 159546538 5.0E-06 ATGGCGAGGTGCCAG 15 E2F1_E2F_DBD_monomeric_14_2 SELEX - 159546724 159546737 9.0E-06 ATATGGCTCCTCTT 14 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 159547096 159547105 1.0E-06 AACATTCCAT 10 ETV6_ETS_full_dimeric_15_1 SELEX + 159546760 159546774 5.0E-06 CTGGAAGAGGAAATA 15 V_HOXA9_01_M01351 TRANSFAC - 159546773 159546789 7.0E-06 CCAACCATAAAACTTTA 17 V_EBF_Q6_M00977 TRANSFAC - 159545764 159545774 8.0E-06 GTCCCCAGGGA 11 V_SIX6_02_M01398 TRANSFAC - 159546564 159546580 5.0E-06 AATGGAATATCAAAAGT 17 V_FOXD3_01_M00130 TRANSFAC + 159546951 159546962 9.0E-06 AAATGTTATTTC 12 V_SPIB_02_M02041 TRANSFAC + 159546765 159546774 4.0E-06 AGAGGAAATA 10 V_FOXJ2_02_M00423 TRANSFAC - 159546949 159546962 2.0E-06 GAAATAACATTTAT 14 V_RP58_01_M00532 TRANSFAC - 159546648 159546659 3.0E-06 AACACATCTGGC 12 V_RP58_01_M00532 TRANSFAC + 159550486 159550497 7.0E-06 CTCACATCTGTA 12 V_AP2_Q6_01_M00915 TRANSFAC - 159546207 159546219 1.0E-05 CGCTCCTCAGGCC 13 V_SP1_03_M02281 TRANSFAC + 159545423 159545432 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 159546704 159546713 7.0E-06 CCCCGCCCCC 10 V_AP2_Q6_M00189 TRANSFAC + 159545951 159545962 1.0E-06 CGCCCGCCGGCG 12 V_NERF_Q2_M00531 TRANSFAC + 159547319 159547336 2.0E-06 TTCCAGGAAGGAGTCTTG 18 V_SP1_02_M01303 TRANSFAC - 159545421 159545431 3.0E-06 GGGGCGGGGGG 11 V_PU1_Q4_M01172 TRANSFAC - 159546762 159546780 0.0E+00 AAACTTTATTTCCTCTTCC 19 V_LYF1_01_M00141 TRANSFAC + 159547007 159547015 9.0E-06 TTTGGGAAA 9 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 159546278 159546292 7.0E-06 GGGGGTCAGTGCCGG 15 V_HNF6_Q6_M00639 TRANSFAC + 159545464 159545475 8.0E-06 AAAAATCCATCT 12 V_SPIC_01_M02042 TRANSFAC + 159546765 159546774 7.0E-06 AGAGGAAATA 10 V_ZNF219_01_M01122 TRANSFAC + 159546338 159546349 0.0E+00 CGCCCCCCTCCC 12 V_SREBP1_01_M00220 TRANSFAC + 159550529 159550539 8.0E-06 GATCACCTGAG 11 V_SIX1_01_M01313 TRANSFAC - 159546564 159546580 6.0E-06 AATGGAATATCAAAAGT 17 V_POLY_C_M00212 TRANSFAC + 159546770 159546787 2.0E-06 AAATAAAGTTTTATGGTT 18 V_SP4_03_M02810 TRANSFAC - 159546684 159546700 1.0E-06 GATTCCGCCCCCTATTC 17 V_SIX3_01_M01358 TRANSFAC - 159546564 159546580 8.0E-06 AATGGAATATCAAAAGT 17 V_HOXB9_01_M01426 TRANSFAC - 159546774 159546789 9.0E-06 CCAACCATAAAACTTT 16 V_AP1_Q4_M00188 TRANSFAC + 159550481 159550491 5.0E-06 AGTGACTCACA 11 V_SP1_Q6_M00196 TRANSFAC - 159545421 159545433 6.0E-06 GGGGGGCGGGGGG 13 V_SP1_Q6_M00196 TRANSFAC + 159545696 159545708 4.0E-06 AGAGGGCGGGGCC 13 V_ZF5_B_M00333 TRANSFAC - 159545874 159545886 3.0E-06 TGAGGACGCGCTT 13 V_CDX2_Q5_M00729 TRANSFAC + 159546774 159546787 1.0E-06 AAAGTTTTATGGTT 14 V_MATH1_Q2_M01716 TRANSFAC + 159545585 159545594 9.0E-06 CCACCTGGTG 10 V_ELF5_01_M01197 TRANSFAC + 159546764 159546774 6.0E-06 AAGAGGAAATA 11 V_YY1_Q6_02_M01035 TRANSFAC + 159546388 159546398 0.0E+00 GCCGCCATTTT 11 V_REX1_03_M01744 TRANSFAC - 159546387 159546398 0.0E+00 AAAATGGCGGCC 12 V_IK2_01_M00087 TRANSFAC + 159547006 159547017 8.0E-06 CTTTGGGAAAGA 12 V_HIC1_02_M01072 TRANSFAC - 159545707 159545721 2.0E-06 CCCCGCTGCCCGGGG 15 V_CTCF_02_M01259 TRANSFAC + 159545579 159545598 9.0E-06 ACCCTCCCACCTGGTGGCAC 20 V_HOXD9_Q2_M01834 TRANSFAC - 159546778 159546787 4.0E-06 AACCATAAAA 10 V_SP4_Q5_M01273 TRANSFAC + 159545422 159545432 5.0E-06 CCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 159546704 159546714 5.0E-06 CCCCCGCCCCC 11 V_ELF1_Q6_M00746 TRANSFAC + 159546762 159546773 0.0E+00 GGAAGAGGAAAT 12 V_CAAT_01_M00254 TRANSFAC - 159546642 159546653 4.0E-06 TCTGGCCAATGA 12 V_NKX3A_02_M01383 TRANSFAC - 159547051 159547067 9.0E-06 TAGTAGGCACTCAAAAA 17 V_NFY_01_M00287 TRANSFAC - 159546638 159546653 8.0E-06 TCTGGCCAATGAGAAG 16 V_TCF4_Q5_M00671 TRANSFAC - 159546865 159546872 1.0E-05 CCTTTGAA 8 V_TITF1_Q3_M00432 TRANSFAC + 159546659 159546668 8.0E-06 TGTCAAGTGT 10 V_PBX_Q3_M00998 TRANSFAC - 159545463 159545474 7.0E-06 GATGGATTTTTG 12 V_EWSR1FLI1_01_M02252 TRANSFAC + 159546829 159546846 3.0E-06 GGGAGAAAGGATGGAATC 18 V_ZIC3_04_M02837 TRANSFAC - 159546343 159546357 9.0E-06 GTCCCCCGGGGAGGG 15 V_ZIC1_04_M02835 TRANSFAC - 159546344 159546357 5.0E-06 GTCCCCCGGGGAGG 14 V_SIX6_01_M01345 TRANSFAC - 159546564 159546580 8.0E-06 AATGGAATATCAAAAGT 17 V_IRF1_01_M00062 TRANSFAC - 159546564 159546576 1.0E-05 GAATATCAAAAGT 13 V_CTF1_01_M01196 TRANSFAC + 159546525 159546538 2.0E-06 TGGCACCTCGCCAT 14 V_SP1_Q2_01_M00933 TRANSFAC + 159545423 159545432 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 159546704 159546713 4.0E-06 CCCCGCCCCC 10 V_HOXA10_01_M01464 TRANSFAC + 159546766 159546781 9.0E-06 GAGGAAATAAAGTTTT 16 V_NFYA_Q5_M02106 TRANSFAC - 159546638 159546651 1.0E-06 TGGCCAATGAGAAG 14 V_SP1_Q4_01_M00932 TRANSFAC + 159545696 159545708 1.0E-06 AGAGGGCGGGGCC 13 V_RNF96_01_M01199 TRANSFAC - 159546152 159546161 7.0E-06 GCCCGCAGCC 10 TLX1_NFIC_MA0119.1 JASPAR + 159546525 159546538 2.0E-06 TGGCACCTCGCCAT 14 V_COUP_DR1_Q6_M00765 TRANSFAC + 159545553 159545565 9.0E-06 AGACCTGTGAGCC 13 V_SPI1_02_M02043 TRANSFAC + 159546765 159546774 3.0E-06 AGAGGAAATA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.