Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SORCS1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 114815 sortilin-related VPS10 domain containing receptor 1 chr10 - 108923966 - 108929466 108924466 Transcription Factor Binding Sites   Download all TFBS in the SORCS1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints ISX_homeodomain_DBD_dimeric_13_1 SELEX + 108925022 108925034 5.0E-06 GTGATGTAATTAA 13 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 108925021 108925032 8.0E-06 AATTACATCACT 12 PHOX2B_homeodomain_full_dimeric_11_1 SELEX + 108925023 108925033 4.0E-06 TGATGTAATTA 11 NFIL3_bZIP_DBD_dimeric_12_1 SELEX - 108925021 108925032 6.0E-06 AATTACATCACT 12 PRRX1_homeodomain_full_dimeric_11_1 SELEX + 108925023 108925033 6.0E-06 TGATGTAATTA 11 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 108925022 108925034 5.0E-06 GTGATGTAATTAA 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 108925022 108925034 3.0E-06 GTGATGTAATTAA 13 Myf_MA0055.1 JASPAR + 108925007 108925018 6.0E-06 AGGCAGCAGCAG 12 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX + 108925023 108925033 4.0E-06 TGATGTAATTA 11 V_MINI20_B_M00324 TRANSFAC - 108924396 108924416 9.0E-06 GCCCGCCCCCACCGCGGCGCA 21 V_FOXP1_01_M00987 TRANSFAC + 108922961 108922980 4.0E-06 TTATTTGTGCTCTTCATTAG 20 V_STAT3STAT3_Q3_M01220 TRANSFAC - 108924994 108925007 1.0E-05 TTTCCGGGATCTCC 14 V_EGR_Q6_M00807 TRANSFAC + 108924405 108924415 6.0E-06 GTGGGGGCGGG 11 V_AP2_Q6_01_M00915 TRANSFAC - 108924985 108924997 1.0E-05 CTCCCCCCAGGCT 13 V_NKX61_03_M01489 TRANSFAC - 108925023 108925039 8.0E-06 ATCATTTAATTACATCA 17 V_DLX2_01_M01468 TRANSFAC - 108925022 108925037 2.0E-06 CATTTAATTACATCAC 16 V_HOXC6_01_M01406 TRANSFAC + 108925023 108925039 5.0E-06 TGATGTAATTAAATGAT 17 V_CDX_Q5_M00991 TRANSFAC - 108922952 108922969 4.0E-06 CACAAATAAAGACTTAAC 18 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 108924520 108924534 6.0E-06 TGAAGTCACTGGCGG 15 V_HOXA6_01_M01392 TRANSFAC - 108925022 108925037 5.0E-06 CATTTAATTACATCAC 16 V_MYF_01_M01302 TRANSFAC + 108925007 108925018 6.0E-06 AGGCAGCAGCAG 12 V_E4BP4_01_M00045 TRANSFAC + 108925021 108925032 8.0E-06 AGTGATGTAATT 12 V_HNF4_01_B_M00411 TRANSFAC + 108922861 108922875 9.0E-06 AGGACCAAAGCTCAT 15 V_E12_Q6_M00693 TRANSFAC + 108924430 108924440 7.0E-06 GGCAGGTGGCG 11 V_KROX_Q6_M00982 TRANSFAC - 108924402 108924415 1.0E-06 CCCGCCCCCACCGC 14 V_CEBPD_Q6_M00621 TRANSFAC - 108925021 108925032 2.0E-06 AATTACATCACT 12 V_CEBPB_02_M00117 TRANSFAC - 108922914 108922927 3.0E-06 GGATTGCTCAATTC 14 V_CDX2_01_M01449 TRANSFAC + 108925023 108925038 7.0E-06 TGATGTAATTAAATGA 16 V_EGR1_Q6_M01873 TRANSFAC + 108924762 108924771 4.0E-06 GCGGGGGCGG 10 V_STAT5A_02_M00460 TRANSFAC - 108922893 108922916 6.0E-06 TTCCAGGAGGCTGGATTCCAGGGG 24 V_CDX1_01_M01373 TRANSFAC + 108925023 108925038 1.0E-06 TGATGTAATTAAATGA 16 V_PIT1_01_M01465 TRANSFAC - 108925024 108925040 6.0E-06 GATCATTTAATTACATC 17 V_MUSCLE_INI_B_M00321 TRANSFAC - 108924396 108924416 0.0E+00 GCCCGCCCCCACCGCGGCGCA 21 V_ARID3A_04_M02735 TRANSFAC + 108925023 108925039 9.0E-06 TGATGTAATTAAATGAT 17 V_MINI19_B_M00323 TRANSFAC - 108924396 108924416 6.0E-06 GCCCGCCCCCACCGCGGCGCA 21 V_BRN4_01_M01473 TRANSFAC - 108925024 108925040 4.0E-06 GATCATTTAATTACATC 17 V_HOXB8_01_M01451 TRANSFAC + 108925023 108925038 6.0E-06 TGATGTAATTAAATGA 16 V_CPHX_01_M01478 TRANSFAC + 108925022 108925035 6.0E-06 GTGATGTAATTAAA 14 V_NKX61_02_M01469 TRANSFAC - 108925024 108925039 1.0E-06 ATCATTTAATTACATC 16 V_R_01_M00273 TRANSFAC - 108924594 108924614 3.0E-06 TCGGCCGCGGGACGCGGCGCC 21 V_HOXD8_01_M01432 TRANSFAC + 108925024 108925040 8.0E-06 GATGTAATTAAATGATC 17 V_SIX6_08_M02897 TRANSFAC - 108923020 108923036 4.0E-06 ATCAGATATATCCCAGT 17 V_SIX6_08_M02897 TRANSFAC + 108923021 108923037 6.0E-06 CTGGGATATATCTGATC 17 V_HOXB3_01_M01330 TRANSFAC + 108925023 108925039 7.0E-06 TGATGTAATTAAATGAT 17 V_MOX1_01_M01443 TRANSFAC - 108925022 108925037 2.0E-06 CATTTAATTACATCAC 16 V_MOX1_01_M01443 TRANSFAC + 108925024 108925039 1.0E-06 GATGTAATTAAATGAT 16 V_BSX_01_M01442 TRANSFAC - 108925022 108925037 8.0E-06 CATTTAATTACATCAC 16 V_BSX_01_M01442 TRANSFAC + 108925024 108925039 2.0E-06 GATGTAATTAAATGAT 16 V_HOXD3_01_M01338 TRANSFAC + 108925022 108925037 8.0E-06 GTGATGTAATTAAATG 16 V_HOXD3_01_M01338 TRANSFAC - 108925024 108925039 8.0E-06 ATCATTTAATTACATC 16 V_LHX5_01_M01353 TRANSFAC - 108925022 108925038 9.0E-06 TCATTTAATTACATCAC 17 V_LHX5_01_M01353 TRANSFAC + 108925023 108925039 4.0E-06 TGATGTAATTAAATGAT 17 V_CEBP_Q2_01_M00912 TRANSFAC - 108922914 108922925 3.0E-06 ATTGCTCAATTC 12 V_HOXA10_01_M01464 TRANSFAC + 108925024 108925039 0.0E+00 GATGTAATTAAATGAT 16 V_HNF4_01_M00134 TRANSFAC + 108922859 108922877 8.0E-06 ATAGGACCAAAGCTCATGG 19 V_DLX1_01_M01439 TRANSFAC + 108925022 108925035 2.0E-06 GTGATGTAATTAAA 14 V_HOXD10_01_M01375 TRANSFAC + 108925024 108925040 1.0E-06 GATGTAATTAAATGATC 17 V_CEBPA_Q6_M01866 TRANSFAC + 108922914 108922926 7.0E-06 GAATTGAGCAATC 13 V_HOXC9_01_M01416 TRANSFAC + 108925023 108925038 3.0E-06 TGATGTAATTAAATGA 16 V_HOXC8_01_M01321 TRANSFAC + 108925022 108925037 3.0E-06 GTGATGTAATTAAATG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.