Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CHRNA7 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1139 cholinergic receptor, nicotinic, alpha 7 (neuronal) chr15 + 32317685 - 32323185 32322685 Transcription Factor Binding Sites   Download all TFBS in the CHRNA7 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Pax5_MA0014.1 JASPAR + 32325855 32325874 5.0E-06 TGGTTTTTGAAGCAGAGCCA 20 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 32322622 32322632 1.0E-05 GCCCCGCCCCC 11 EWSR1-FLI1_MA0149.1 JASPAR - 32321835 32321852 0.0E+00 GGAAGGGAGGGAGGAAGG 18 SOX7_HMG_full_dimeric_17_2 SELEX - 32321329 32321345 9.0E-06 AAAGGATAGCAGTCATT 17 SPIB_ETS_DBD_monomeric_14_1 SELEX - 32321846 32321859 9.0E-06 GGAAAGAGGAAGGG 14 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 32322598 32322613 6.0E-06 CCCCGCCCCCCCATCC 16 SP1_MA0079.2 JASPAR - 32322604 32322613 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 32322616 32322625 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 32322622 32322631 7.0E-06 CCCCGCCCCC 10 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 32321290 32321306 6.0E-06 TGCTCTCCAGGGACCCC 17 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 32321712 32321723 8.0E-06 AGCCCCCGGGCA 12 SOX18_HMG_full_dimeric_15_3 SELEX - 32321330 32321344 4.0E-06 AAGGATAGCAGTCAT 15 REST_MA0138.2 JASPAR + 32325893 32325913 5.0E-06 CTCAGCGCTCTGGACAGAGAC 21 V_AP2ALPHA_Q6_M01857 TRANSFAC - 32321713 32321723 9.0E-06 AGCCCCCGGGC 11 V_SP1_Q6_01_M00931 TRANSFAC + 32322623 32322632 4.0E-06 GGGGCGGGGC 10 V_SP1_03_M02281 TRANSFAC - 32322604 32322613 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 32322616 32322625 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 32322622 32322631 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC + 32322605 32322615 8.0E-06 GGGGCGGGGAC 11 V_SP1_02_M01303 TRANSFAC + 32322617 32322627 8.0E-06 GGGGCGGGGGC 11 V_SP1_02_M01303 TRANSFAC + 32322664 32322674 8.0E-06 GGGGCGGGGGC 11 V_PU1_Q4_M01172 TRANSFAC + 32321840 32321858 1.0E-06 CTCCCTCCCTTCCTCTTTC 19 V_WT1_Q6_01_M02036 TRANSFAC - 32322666 32322675 4.0E-06 CGCCCCCGCC 10 V_ZFP410_03_M02832 TRANSFAC + 32321789 32321805 4.0E-06 GCAAATGGGATGGAGCT 17 V_SP4_03_M02810 TRANSFAC - 32322599 32322615 5.0E-06 GTCCCCGCCCCCCCATC 17 V_KROX_Q6_M00982 TRANSFAC - 32322611 32322624 1.0E-06 CCCGCCCCCGTCCC 14 V_KROX_Q6_M00982 TRANSFAC - 32322617 32322630 0.0E+00 CCCGCCCCCGCCCC 14 V_KROX_Q6_M00982 TRANSFAC - 32322649 32322662 9.0E-06 CCCGCCCCCGCGCG 14 V_KROX_Q6_M00982 TRANSFAC - 32322664 32322677 0.0E+00 CGCGCCCCCGCCCC 14 V_OLF1_01_M00261 TRANSFAC - 32321287 32321308 9.0E-06 CAGGGGTCCCTGGAGAGCAGAC 22 V_SP1_Q6_M00196 TRANSFAC + 32322615 32322627 9.0E-06 CGGGGGCGGGGGC 13 V_SP1_Q6_M00196 TRANSFAC + 32322621 32322633 2.0E-06 CGGGGGCGGGGCT 13 V_EGR1_Q6_M01873 TRANSFAC + 32322652 32322661 4.0E-06 GCGGGGGCGG 10 V_REST_01_M01256 TRANSFAC - 32325896 32325917 5.0E-06 TTGTGTCTCTGTCCAGAGCGCT 22 V_SRF_03_M01304 TRANSFAC - 32325837 32325849 6.0E-06 AGCCAAGTAAGGC 13 V_GABPBETA_Q3_M01876 TRANSFAC - 32321845 32321855 1.0E-05 AGAGGAAGGGA 11 V_E2F2_03_M02742 TRANSFAC + 32322689 32322703 1.0E-06 TTAAAGGCGCGCGAG 15 V_REST_02_M02256 TRANSFAC + 32325893 32325913 5.0E-06 CTCAGCGCTCTGGACAGAGAC 21 V_TBX5_Q5_M01044 TRANSFAC + 32322540 32322549 9.0E-06 CTCACACCTC 10 V_EGR1_06_M02744 TRANSFAC - 32322599 32322612 9.0E-06 CCCGCCCCCCCATC 14 V_EGR1_06_M02744 TRANSFAC - 32322649 32322662 7.0E-06 CCCGCCCCCGCGCG 14 V_EWSR1FLI1_01_M02252 TRANSFAC - 32321835 32321852 0.0E+00 GGAAGGGAGGGAGGAAGG 18 V_SP1_Q2_01_M00933 TRANSFAC - 32322604 32322613 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 32322616 32322625 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 32322622 32322631 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 32322619 32322632 2.0E-06 GGCGGGGGCGGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC + 32322603 32322615 8.0E-06 GGGGGGCGGGGAC 13 V_SP1_Q4_01_M00932 TRANSFAC + 32322621 32322633 2.0E-06 CGGGGGCGGGGCT 13 V_GFI1_Q6_01_M02010 TRANSFAC - 32325888 32325897 3.0E-06 CTGAGATTTC 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.