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CHRNA3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1136 cholinergic receptor, nicotinic, alpha 3 (neuronal) chr15 - 78913137 - 78918637 78913637 Transcription Factor Binding Sites   Download all TFBS in the CHRNA3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 78910917 78910935 0.0E+00 TCACCACCAGGGGGCAGCA 19 SP3_C2H2_DBD_monomeric_11_1 SELEX - 78911724 78911734 1.0E-05 CCCACACCCCC 11 Tp53_p53l_DBD_dimeric_18_1 SELEX - 78911527 78911544 7.0E-06 ACAAGTGATTTGTCAGGA 18 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 78911289 78911305 7.0E-06 AGGTTAAGTAACGATTT 17 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 78910901 78910912 4.0E-06 AAAGCAAATAAA 12 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 78911674 78911686 8.0E-06 AAGAGGTCAAGAA 13 EBF1_EBF_full_dimeric_14_1 SELEX + 78911278 78911291 2.0E-06 AGTCCCTGGGGAAA 14 EBF1_EBF_full_dimeric_14_1 SELEX - 78911278 78911291 1.0E-06 TTTCCCCAGGGACT 14 EWSR1-FLI1_MA0149.1 JASPAR + 78912473 78912490 4.0E-06 GGGAGGAAGACAGGAGGC 18 PDX1_homeodomain_DBD_monomeric_8_1 SELEX + 78918154 78918161 5.0E-06 GTAATTAA 8 STAT1_MA0137.2 JASPAR - 78911049 78911063 1.0E-06 CCTTTCCCAGAATTA 15 SPIB_ETS_DBD_monomeric_14_1 SELEX + 78911006 78911019 5.0E-06 AGAAAGAGGAATTA 14 TBX1_TBX_DBD_dimeric_19_1 SELEX + 78911128 78911146 1.0E-05 AGCTGAGACATGGACACCT 19 Dlx2_homeodomain_DBD_monomeric_8_1 SELEX + 78918154 78918161 5.0E-06 GTAATTAA 8 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX - 78911727 78911738 8.0E-06 TTGCCCCACACC 12 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX + 78918153 78918162 5.0E-06 TGTAATTAAG 10 VAX1_homeodomain_DBD_monomeric_8_1 SELEX - 78918154 78918161 9.0E-06 TTAATTAC 8 SCRT1_C2H2_DBD_monomeric_15_1 SELEX + 78910965 78910979 5.0E-06 GAGCCACAGGTTGGT 15 TBX20_TBX_full_dimeric_16_1 SELEX + 78918222 78918237 2.0E-06 GGGTGTGAGGTTGGCA 16 TBX15_TBX_DBD_dimeric_19_1 SELEX + 78911128 78911146 3.0E-06 AGCTGAGACATGGACACCT 19 VAX2_homeodomain_DBD_monomeric_8_1 SELEX - 78918154 78918161 5.0E-06 TTAATTAC 8 Tp53_p53l_DBD_dimeric_17_1 SELEX + 78910205 78910221 9.0E-06 ACATGTGGAAGGCAATT 17 VDR_nuclearreceptor_full_dimeric_16_1 SELEX - 78911572 78911587 6.0E-06 AGGTTCAGAGAGGTTA 16 SPI1_ETS_full_monomeric_14_1 SELEX + 78911006 78911019 5.0E-06 AGAAAGAGGAATTA 14 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX - 78911725 78911738 6.0E-06 TTGCCCCACACCCC 14 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 78911727 78911738 7.0E-06 TTGCCCCACACC 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 78910902 78910914 9.0E-06 AAGCAAATAAAAC 13 Meox2_homeodomain_DBD_monomeric_8_1 SELEX - 78918154 78918161 9.0E-06 TTAATTAC 8 IRX5_homeodomain_DBD_dimeric_12_1 SELEX + 78911035 78911046 7.0E-06 TTACAAAACAAG 12 V_OBOX6_01_M01445 TRANSFAC + 78911604 78911618 2.0E-06 AAATAAGGATTATAA 15 V_HNF3B_01_M00131 TRANSFAC - 78910901 78910915 1.0E-06 TGTTTTATTTGCTTT 15 V_SPI1_01_M01203 TRANSFAC + 78911006 78911022 7.0E-06 AGAAAGAGGAATTAAAG 17 V_BCL6_Q3_01_M02085 TRANSFAC - 78911002 78911011 1.0E-06 CTTTCTAGGA 10 V_EBF_Q6_M00977 TRANSFAC - 78911280 78911290 5.0E-06 TTCCCCAGGGA 11 V_TBX15_01_M01263 TRANSFAC - 78911128 78911146 8.0E-06 AGGTGTCCATGTCTCAGCT 19 V_SOX40_04_M02908 TRANSFAC - 78911608 78911623 9.0E-06 TACGTTTATAATCCTT 16 V_SRY_07_M02813 TRANSFAC + 78911195 78911210 7.0E-06 TCTCATTGTAATCTTC 16 V_SMAD3_Q6_01_M01888 TRANSFAC - 78911739 78911751 5.0E-06 AGGCAGACAGCAT 13 V_FOXA2_04_M02749 TRANSFAC + 78910899 78910915 7.0E-06 CTAAAGCAAATAAAACA 17 V_CEBP_Q3_M00770 TRANSFAC - 78911034 78911045 7.0E-06 TTGTTTTGTAAT 12 V_HMGIY_Q3_M01010 TRANSFAC + 78910213 78910227 2.0E-06 AAGGCAATTTCTTGG 15 V_GM397_03_M02760 TRANSFAC - 78911646 78911662 2.0E-06 AAGCTGTGCACTTCCTT 17 V_HOXA13_02_M01297 TRANSFAC + 78910906 78910914 1.0E-06 AAATAAAAC 9 V_SPDEF_04_M02915 TRANSFAC + 78910995 78911010 2.0E-06 TACTTCATCCTAGAAA 16 V_SP1_Q6_01_M00931 TRANSFAC + 78913378 78913387 4.0E-06 GGGGCGGGGC 10 V_NR2F2_03_M02783 TRANSFAC + 78911671 78911686 9.0E-06 GGTAAGAGGTCAAGAA 16 V_HNF3_Q6_01_M01012 TRANSFAC - 78910898 78910915 2.0E-06 TGTTTTATTTGCTTTAGG 18 V_HFH4_01_M00742 TRANSFAC - 78910901 78910913 6.0E-06 TTTTATTTGCTTT 13 V_VAX2_01_M01327 TRANSFAC + 78918149 78918164 4.0E-06 TTCCTGTAATTAAGAC 16 V_HES1_Q6_M02011 TRANSFAC - 78911095 78911104 6.0E-06 GCCACGAGCC 10 V_TST1_01_M00133 TRANSFAC + 78911011 78911025 0.0E+00 GAGGAATTAAAGTTG 15 V_HMBOX1_01_M01456 TRANSFAC + 78910984 78911000 8.0E-06 ATGATCTGGTTTACTTC 17 V_TBX18_01_M01262 TRANSFAC + 78911128 78911146 9.0E-06 AGCTGAGACATGGACACCT 19 V_RXRA_03_M02791 TRANSFAC - 78911671 78911687 4.0E-06 GTTCTTGACCTCTTACC 17 V_SP1_Q6_M00196 TRANSFAC + 78913376 78913388 7.0E-06 GCGGGGCGGGGCG 13 V_HNF3_Q6_M00791 TRANSFAC + 78910900 78910912 5.0E-06 TAAAGCAAATAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 78910900 78910910 2.0E-06 TATTTGCTTTA 11 V_STAT5A_02_M00460 TRANSFAC + 78911052 78911075 3.0E-06 TTCTGGGAAAGGCTCCTCCAGAAG 24 V_CDX2_Q5_M00729 TRANSFAC - 78911611 78911624 8.0E-06 ATACGTTTATAATC 14 V_BCL6_Q3_M01171 TRANSFAC - 78911002 78911011 8.0E-06 CTTTCTAGGA 10 V_SFPI1_04_M02896 TRANSFAC - 78918147 78918160 3.0E-06 TAATTACAGGAAAC 14 V_RREB1_01_M00257 TRANSFAC - 78911722 78911735 2.0E-06 CCCCACACCCCCAC 14 V_STAT4_Q5_M02117 TRANSFAC + 78911052 78911061 7.0E-06 TTCTGGGAAA 10 V_STAT4_Q5_M02117 TRANSFAC - 78918148 78918157 4.0E-06 TTACAGGAAA 10 V_CTCF_02_M01259 TRANSFAC + 78910914 78910933 0.0E+00 CAGTCACCACCAGGGGGCAG 20 V_CTCF_01_M01200 TRANSFAC + 78910916 78910935 0.0E+00 GTCACCACCAGGGGGCAGCA 20 V_SRF_03_M01304 TRANSFAC - 78910883 78910895 2.0E-06 AACCAAGAAAGGC 13 V_ISGF4G_04_M02875 TRANSFAC + 78911037 78911050 6.0E-06 ACAAAACAAGACTA 14 V_SP4_Q5_M01273 TRANSFAC - 78913377 78913387 2.0E-06 GCCCCGCCCCG 11 V_HBP1_04_M02866 TRANSFAC + 78911192 78911208 5.0E-06 TGATCTCATTGTAATCT 17 V_HOXB7_01_M01396 TRANSFAC - 78918149 78918164 4.0E-06 GTCTTAATTACAGGAA 16 V_GFI1_Q6_M01067 TRANSFAC + 78911532 78911544 3.0E-06 ACAAATCACTTGT 13 V_CEBPA_01_M00116 TRANSFAC + 78911032 78911045 9.0E-06 GAATTACAAAACAA 14 V_FOXL1_02_M02857 TRANSFAC + 78911034 78911049 4.0E-06 ATTACAAAACAAGACT 16 V_PITX1_01_M01484 TRANSFAC + 78911604 78911620 1.0E-05 AAATAAGGATTATAAAC 17 V_ESRRA_04_M02852 TRANSFAC + 78911671 78911687 6.0E-06 GGTAAGAGGTCAAGAAC 17 V_VDR_Q6_M00961 TRANSFAC + 78911576 78911587 4.0E-06 CTCTCTGAACCT 12 V_P53_05_M01655 TRANSFAC - 78911520 78911539 5.0E-06 TGATTTGTCAGGATTTGCAC 20 V_FOX_Q2_M00809 TRANSFAC - 78910901 78910913 1.0E-06 TTTTATTTGCTTT 13 V_TBX22_01_M01195 TRANSFAC - 78911128 78911146 3.0E-06 AGGTGTCCATGTCTCAGCT 19 V_ZFP281_04_M02831 TRANSFAC + 78911299 78911313 4.0E-06 TTAACCTCCCCCACC 15 V_HFH3_01_M00289 TRANSFAC - 78910901 78910913 5.0E-06 TTTTATTTGCTTT 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 78912473 78912490 4.0E-06 GGGAGGAAGACAGGAGGC 18 V_FOXJ2_01_M00422 TRANSFAC + 78910898 78910915 5.0E-06 CCTAAAGCAAATAAAACA 18 V_FOXO1_04_M01969 TRANSFAC - 78910978 78910997 2.0E-06 GTAAACCAGATCATGGAGAC 20 V_SIX6_08_M02897 TRANSFAC + 78910813 78910829 7.0E-06 AAGAGATATATCTGCCA 17 V_SMAD3_Q6_M00701 TRANSFAC + 78911743 78911751 1.0E-05 TGTCTGCCT 9 V_HNF3B_Q6_M02014 TRANSFAC - 78910903 78910911 1.0E-05 TTATTTGCT 9 V_HOXA7_03_M01394 TRANSFAC - 78918149 78918164 2.0E-06 GTCTTAATTACAGGAA 16 V_OBOX5_01_M01381 TRANSFAC + 78911605 78911621 8.0E-06 AATAAGGATTATAAACG 17 V_OBOX6_02_M03068 TRANSFAC + 78911604 78911618 2.0E-06 AAATAAGGATTATAA 15 V_STAT1_Q6_M01823 TRANSFAC + 78911052 78911061 2.0E-06 TTCTGGGAAA 10 V_STAT1_Q6_M01823 TRANSFAC - 78918148 78918157 4.0E-06 TTACAGGAAA 10 V_OBOX6_06_M03067 TRANSFAC - 78911605 78911621 8.0E-06 CGTTTATAATCCTTATT 17 V_PAX4_04_M00380 TRANSFAC + 78911602 78911631 2.0E-06 CAAAATAAGGATTATAAACGTATCCACCTC 30 V_CEBPA_Q6_M01866 TRANSFAC - 78911033 78911045 3.0E-06 TTGTTTTGTAATT 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.