Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CHRM1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1128 cholinergic receptor, muscarinic 1 chr11 - 62688512 - 62694012 62689012 Transcription Factor Binding Sites   Download all TFBS in the CHRM1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX + 62687576 62687589 4.0E-06 GAGGTCAGAGGGCA 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 62691310 62691320 1.0E-05 GCCCCGCCCCC 11 EBF1_EBF_full_dimeric_14_1 SELEX + 62686227 62686240 4.0E-06 AATCCCTAGGGGCT 14 EBF1_EBF_full_dimeric_14_1 SELEX - 62686227 62686240 3.0E-06 AGCCCCTAGGGATT 14 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 62687576 62687589 4.0E-06 GAGGTCAGAGGGCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 62687576 62687589 3.0E-06 GAGGTCAGAGGGCA 14 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 62688933 62688943 0.0E+00 AGCCTCAGGCA 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 62688933 62688943 6.0E-06 TGCCTGAGGCT 11 EWSR1-FLI1_MA0149.1 JASPAR + 62688893 62688910 2.0E-06 GGAGGAAAGGGAGAAAAG 18 EWSR1-FLI1_MA0149.1 JASPAR + 62688902 62688919 1.0E-06 GGAGAAAAGGAAGGGAGG 18 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 62688933 62688943 0.0E+00 AGCCTCAGGCA 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 62688933 62688943 8.0E-06 TGCCTGAGGCT 11 Pax4_MA0068.1 JASPAR - 62691197 62691226 9.0E-06 AAAATAAAGACAATGTTCCCAGCCTCCCTG 30 ZIC4_C2H2_DBD_monomeric_15_1 SELEX + 62690671 62690685 4.0E-06 TGCCCCCTGCTGGGC 15 IRF1_MA0050.1 JASPAR + 62691694 62691705 0.0E+00 AAAAGTGAAAGC 12 OTX1_homeodomain_DBD_monomeric_8_1 SELEX + 62693084 62693091 1.0E-05 TTAATCCG 8 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX + 62691165 62691180 5.0E-06 CACCACCCCCGCACTC 16 HES7_bHLH_DBD_dimeric_12_1 SELEX - 62691677 62691688 8.0E-06 ACGCACGTGCCA 12 SP1_MA0079.2 JASPAR + 62691311 62691320 7.0E-06 CCCCGCCCCC 10 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX + 62687576 62687590 2.0E-06 GAGGTCAGAGGGCAG 15 ZIC3_C2H2_full_monomeric_15_1 SELEX + 62690671 62690685 6.0E-06 TGCCCCCTGCTGGGC 15 Gfi_MA0038.1 JASPAR - 62688823 62688832 7.0E-06 CCAATCACTG 10 SP4_C2H2_full_monomeric_17_1 SELEX + 62691307 62691323 4.0E-06 TTGGCCCCGCCCCCGCG 17 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 62687576 62687589 2.0E-06 GAGGTCAGAGGGCA 14 INSM1_MA0155.1 JASPAR - 62688840 62688851 4.0E-06 TGCCAGGGGGTG 12 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 62691693 62691707 1.0E-06 AAAAAGTGAAAGCCA 15 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 62688933 62688943 0.0E+00 AGCCTCAGGCA 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 62688933 62688943 4.0E-06 TGCCTGAGGCT 11 GCM1_GCM_full_monomeric_11_1 SELEX - 62689442 62689452 5.0E-06 CATGCGGGCAC 11 TEAD1_TEA_full_dimeric_17_1 SELEX + 62692974 62692990 9.0E-06 GCATTTTTAAGATTCCC 17 DMBX1_homeodomain_DBD_monomeric_10_1 SELEX - 62693083 62693092 7.0E-06 ACGGATTAAA 10 RUNX1_MA0002.2 JASPAR + 62692878 62692888 3.0E-06 CCCTGTGGTTT 11 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX + 62687576 62687589 4.0E-06 GAGGTCAGAGGGCA 14 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 62691717 62691729 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 62691718 62691730 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 62691719 62691731 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 62691720 62691732 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 62691721 62691733 6.0E-06 AAAAAAAAAAAAA 13 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 62688933 62688943 1.0E-06 AGCCTCAGGCA 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 62688933 62688943 6.0E-06 TGCCTGAGGCT 11 RREB1_MA0073.1 JASPAR + 62689291 62689310 7.0E-06 CACCCACCCAACTACACACC 20 RREB1_MA0073.1 JASPAR + 62691024 62691043 8.0E-06 CCCCCCGCCACCCCCACCAC 20 ZIC1_C2H2_full_monomeric_14_1 SELEX + 62690671 62690684 3.0E-06 TGCCCCCTGCTGGG 14 IRF2_MA0051.1 JASPAR + 62691693 62691710 3.0E-06 AAAAAGTGAAAGCCATCA 18 V_FOXP1_01_M00987 TRANSFAC + 62691714 62691733 5.0E-06 CGGTTTTTTTTTTTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 62691717 62691736 1.0E-06 TTTTTTTTTTTTTTTTTAAT 20 V_AP2ALPHA_Q6_M01857 TRANSFAC - 62689423 62689433 9.0E-06 AGCCCCCGGGC 11 V_KLF15_Q2_M01714 TRANSFAC - 62693543 62693556 5.0E-06 GGGCTGGGGAGTGG 14 V_DBX1_01_M01483 TRANSFAC - 62691718 62691734 6.0E-06 TAAAAAAAAAAAAAAAA 17 V_DBX1_01_M01483 TRANSFAC - 62691721 62691737 7.0E-06 TATTAAAAAAAAAAAAA 17 V_MAFK_03_M02776 TRANSFAC - 62692968 62692982 6.0E-06 TAAAAATGCTGTCCC 15 V_SMAD3_Q6_01_M01888 TRANSFAC - 62689664 62689676 4.0E-06 ATACAGACACACG 13 V_EVI1_04_M00081 TRANSFAC - 62691717 62691731 6.0E-06 AAAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC - 62691718 62691732 6.0E-06 AAAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC - 62691719 62691733 6.0E-06 AAAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC - 62691720 62691734 8.0E-06 TAAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC - 62691723 62691737 8.0E-06 TATTAAAAAAAAAAA 15 V_BCL6_01_M01183 TRANSFAC + 62691717 62691732 0.0E+00 TTTTTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC + 62691718 62691733 0.0E+00 TTTTTTTTTTTTTTTT 16 V_CBF_02_M01080 TRANSFAC + 62691707 62691722 3.0E-06 ATCACTGCGGTTTTTT 16 V_SP1_Q6_01_M00931 TRANSFAC - 62691310 62691319 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC - 62691215 62691236 3.0E-06 TCGGAGGCTTAAAATAAAGACA 22 V_IRF_Q6_01_M00972 TRANSFAC + 62691694 62691704 0.0E+00 AAAAGTGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC + 62691692 62691707 0.0E+00 CAAAAAGTGAAAGCCA 16 V_CEBP_01_M00159 TRANSFAC + 62689350 62689362 7.0E-06 TGTTTGGAAATGA 13 V_SP1_03_M02281 TRANSFAC + 62691311 62691320 7.0E-06 CCCCGCCCCC 10 V_PITX2_Q6_M02114 TRANSFAC - 62692019 62692028 3.0E-06 AGTAATCCCA 10 V_PPAR_DR1_Q2_M00763 TRANSFAC - 62687577 62687589 7.0E-06 TGCCCTCTGACCT 13 V_E2A_Q2_M00804 TRANSFAC + 62692933 62692946 7.0E-06 GCACCTGCTGCAGT 14 V_COUPTF_Q6_M01036 TRANSFAC - 62687572 62687594 1.0E-06 TTCTCTGCCCTCTGACCTCAGCC 23 V_PU1_Q4_M01172 TRANSFAC + 62693236 62693254 2.0E-06 GTCCTCAACTTCCTCTCTC 19 V_TCFAP2E_04_M02926 TRANSFAC - 62691716 62691729 7.0E-06 AAAAAAAAAAAAAC 14 V_TCFAP2E_04_M02926 TRANSFAC - 62691717 62691730 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 62691718 62691731 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 62691719 62691732 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 62691720 62691733 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 62691721 62691734 0.0E+00 TAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 62691722 62691735 1.0E-06 TTAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 62691723 62691736 8.0E-06 ATTAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 62691724 62691737 1.0E-06 TATTAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 62691725 62691738 3.0E-06 GTATTAAAAAAAAA 14 V_MEF2A_Q6_M02024 TRANSFAC + 62691221 62691230 2.0E-06 TATTTTAAGC 10 V_PPARGRXRA_01_M02262 TRANSFAC + 62687575 62687589 6.0E-06 TGAGGTCAGAGGGCA 15 V_ELF4_04_M02850 TRANSFAC - 62691716 62691732 3.0E-06 AAAAAAAAAAAAAAAAC 17 V_ELF4_04_M02850 TRANSFAC - 62691717 62691733 6.0E-06 AAAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 62691718 62691734 4.0E-06 TAAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 62691719 62691735 1.0E-06 TTAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 62691720 62691736 0.0E+00 ATTAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 62691721 62691737 0.0E+00 TATTAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 62691722 62691738 1.0E-06 GTATTAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 62691723 62691739 3.0E-06 TGTATTAAAAAAAAAAA 17 V_CRX_Q4_M00623 TRANSFAC - 62692018 62692030 1.0E-05 TCAGTAATCCCAG 13 V_ZFP105_03_M02827 TRANSFAC - 62691714 62691728 6.0E-06 AAAAAAAAAAAACCG 15 V_ZFP105_03_M02827 TRANSFAC - 62691715 62691729 9.0E-06 AAAAAAAAAAAAACC 15 V_ZFP105_03_M02827 TRANSFAC - 62691716 62691730 2.0E-06 AAAAAAAAAAAAAAC 15 V_ZFP105_03_M02827 TRANSFAC - 62691717 62691731 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 62691718 62691732 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 62691719 62691733 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 62691720 62691734 0.0E+00 TAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 62691721 62691735 0.0E+00 TTAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 62691722 62691736 0.0E+00 ATTAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 62691723 62691737 1.0E-06 TATTAAAAAAAAAAA 15 V_RUNX1_01_M02257 TRANSFAC + 62692878 62692888 3.0E-06 CCCTGTGGTTT 11 V_IRF2_01_M00063 TRANSFAC + 62691693 62691705 1.0E-06 AAAAAGTGAAAGC 13 V_KROX_Q6_M00982 TRANSFAC + 62691312 62691325 9.0E-06 CCCGCCCCCGCGCG 14 V_SP1_Q6_M00196 TRANSFAC - 62691309 62691321 1.0E-06 CGGGGGCGGGGCC 13 V_IRF3_Q3_M01279 TRANSFAC - 62691695 62691707 5.0E-06 TGGCTTTCACTTT 13 V_EGR1_Q6_M01873 TRANSFAC - 62691313 62691322 4.0E-06 GCGGGGGCGG 10 V_MEF2_03_M00232 TRANSFAC - 62691215 62691236 4.0E-06 TCGGAGGCTTAAAATAAAGACA 22 V_ASCL2_03_M02737 TRANSFAC + 62692929 62692945 8.0E-06 CTGAGCACCTGCTGCAG 17 V_PBX1_05_M01967 TRANSFAC + 62688824 62688837 1.0E-06 AGTGATTGGCATGT 14 V_TCF1_07_M02919 TRANSFAC - 62693083 62693096 3.0E-06 TGACACGGATTAAA 14 V_MZF1_02_M00084 TRANSFAC - 62691835 62691847 3.0E-06 GGGTGAGGGGGTA 13 V_INSM1_01_M02268 TRANSFAC - 62688840 62688851 4.0E-06 TGCCAGGGGGTG 12 V_SP4_Q5_M01273 TRANSFAC + 62691310 62691320 1.0E-06 GCCCCGCCCCC 11 V_OTX2_Q3_M01719 TRANSFAC - 62693082 62693094 4.0E-06 ACACGGATTAAAA 13 V_ZIC2_05_M02940 TRANSFAC - 62689320 62689334 6.0E-06 TCTCACAGCAGGGAG 15 V_MTF1_06_M02882 TRANSFAC - 62691715 62691728 6.0E-06 AAAAAAAAAAAACC 14 V_MTF1_06_M02882 TRANSFAC - 62691716 62691729 1.0E-06 AAAAAAAAAAAAAC 14 V_MTF1_06_M02882 TRANSFAC - 62691717 62691730 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 62691718 62691731 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 62691719 62691732 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 62691720 62691733 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 62691721 62691734 4.0E-06 TAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 62691723 62691736 9.0E-06 ATTAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 62691724 62691737 1.0E-06 TATTAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 62691725 62691738 9.0E-06 GTATTAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 62691717 62691730 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 62691718 62691731 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 62691719 62691732 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 62691720 62691733 3.0E-06 AAAAAAAAAAAAAA 14 V_TAL1_01_M01591 TRANSFAC - 62688902 62688914 0.0E+00 CTTCCTTTTCTCC 13 V_STRA13_01_M00985 TRANSFAC + 62689371 62689384 3.0E-06 GCCTCACGTGAGAG 14 V_STRA13_01_M00985 TRANSFAC - 62689371 62689384 3.0E-06 CTCTCACGTGAGGC 14 V_GATA1_04_M00128 TRANSFAC - 62691086 62691098 0.0E+00 ATCTGATAAGGGT 13 V_OCT1_Q6_M00195 TRANSFAC - 62688825 62688839 6.0E-06 GGACATGCCAATCAC 15 V_LUN1_01_M00480 TRANSFAC - 62691848 62691864 9.0E-06 TCCCAGCTACTCAGAGT 17 V_CBF_01_M01079 TRANSFAC + 62691707 62691722 3.0E-06 ATCACTGCGGTTTTTT 16 V_PITX1_01_M01484 TRANSFAC - 62693080 62693096 6.0E-06 TGACACGGATTAAAACC 17 V_TCF7_04_M02921 TRANSFAC - 62691726 62691740 0.0E+00 CTGTATTAAAAAAAA 15 V_PITX2_Q2_M00482 TRANSFAC - 62692018 62692028 2.0E-06 AGTAATCCCAG 11 V_EGR1_06_M02744 TRANSFAC + 62691166 62691179 2.0E-06 ACCACCCCCGCACT 14 V_EGR1_06_M02744 TRANSFAC + 62691312 62691325 7.0E-06 CCCGCCCCCGCGCG 14 V_IRF1_Q6_01_M01881 TRANSFAC - 62691693 62691706 1.0E-06 GGCTTTCACTTTTT 14 V_SRF_06_M02916 TRANSFAC - 62691712 62691728 4.0E-06 AAAAAAAAAAAACCGCA 17 V_SRF_06_M02916 TRANSFAC - 62691713 62691729 2.0E-06 AAAAAAAAAAAAACCGC 17 V_SRF_06_M02916 TRANSFAC - 62691714 62691730 2.0E-06 AAAAAAAAAAAAAACCG 17 V_SRF_06_M02916 TRANSFAC - 62691715 62691731 1.0E-06 AAAAAAAAAAAAAAACC 17 V_SRF_06_M02916 TRANSFAC - 62691716 62691732 0.0E+00 AAAAAAAAAAAAAAAAC 17 V_SRF_06_M02916 TRANSFAC - 62691717 62691733 0.0E+00 AAAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 62691718 62691734 0.0E+00 TAAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 62691719 62691735 0.0E+00 TTAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 62691720 62691736 0.0E+00 ATTAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 62691721 62691737 0.0E+00 TATTAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 62691722 62691738 0.0E+00 GTATTAAAAAAAAAAAA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 62688893 62688910 2.0E-06 GGAGGAAAGGGAGAAAAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 62688902 62688919 1.0E-06 GGAGAAAAGGAAGGGAGG 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 62692881 62692888 1.0E-05 TGTGGTTT 8 V_SATB1_01_M01232 TRANSFAC - 62691726 62691737 9.0E-06 TATTAAAAAAAA 12 V_IRF1_01_M00062 TRANSFAC + 62691693 62691705 6.0E-06 AAAAAGTGAAAGC 13 V_SP1_Q2_01_M00933 TRANSFAC + 62691311 62691320 4.0E-06 CCCCGCCCCC 10 V_SP1_Q4_01_M00932 TRANSFAC - 62691309 62691321 1.0E-06 CGGGGGCGGGGCC 13 V_HOXD10_01_M01375 TRANSFAC - 62691725 62691741 8.0E-06 CCTGTATTAAAAAAAAA 17 V_TAACC_B_M00331 TRANSFAC - 62688946 62688968 1.0E-06 CAGAACCTAGTCCAACCCCAGAC 23 V_GLIS2_04_M02863 TRANSFAC - 62691726 62691739 0.0E+00 TGTATTAAAAAAAA 14 V_BHLHB2_04_M02845 TRANSFAC + 62690740 62690762 1.0E-05 TGCGCGTACACGTGGCTGAGTGT 23 V_PAX4_04_M00380 TRANSFAC - 62691196 62691225 9.0E-06 AAATAAAGACAATGTTCCCAGCCTCCCTGC 30 PPARG_RXRA_MA0065.2 JASPAR + 62687575 62687589 6.0E-06 TGAGGTCAGAGGGCA 15 V_ZIC1_05_M02939 TRANSFAC - 62689320 62689334 5.0E-06 TCTCACAGCAGGGAG 15 V_TR4_03_M01782 TRANSFAC + 62687577 62687589 2.0E-06 AGGTCAGAGGGCA 13 V_NANOG_02_M01247 TRANSFAC - 62691715 62691734 2.0E-06 TAAAAAAAAAAAAAAAAACC 20 V_NANOG_02_M01247 TRANSFAC - 62691716 62691735 1.0E-06 TTAAAAAAAAAAAAAAAAAC 20 V_NANOG_02_M01247 TRANSFAC - 62691717 62691736 1.0E-06 ATTAAAAAAAAAAAAAAAAA 20 V_NANOG_02_M01247 TRANSFAC - 62691718 62691737 3.0E-06 TATTAAAAAAAAAAAAAAAA 20 V_T3RALPHA_Q6_M01724 TRANSFAC + 62687573 62687583 3.0E-06 GCTGAGGTCAG 11 V_T3RALPHA_Q6_M01724 TRANSFAC + 62692896 62692906 5.0E-06 GATGAGGTCAG 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.