Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C1orf85 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 112770 chromosome 1 open reading frame 85 chr1 - 156264980 - 156270480 156265480 Transcription Factor Binding Sites   Download all TFBS in the C1orf85 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints ESR2_MA0258.1 JASPAR - 156261143 156261160 4.0E-06 AAGGGTCAGGCTACTCTC 18 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX - 156261190 156261203 8.0E-06 CACGGCAAAGGTCA 14 IRF7_IRF_DBD_trimeric_17_1 SELEX - 156265536 156265552 9.0E-06 GAAAGGAAATTTTTTTA 17 Pax4_MA0068.1 JASPAR + 156265537 156265566 5.0E-06 AAAAAAATTTCCTTTCGTCAGCACCATTTA 30 Barhl1_homeodomain_DBD_monomeric_10_1 SELEX - 156265559 156265568 7.0E-06 ATTAAATGGT 10 NR2F1_MA0017.1 JASPAR + 156261190 156261203 6.0E-06 TGACCTTTGCCGTG 14 NFIX_NFI_full_monomeric_9_2 SELEX + 156261115 156261123 8.0E-06 ATTGCCAAT 9 BARHL2_homeodomain_full_monomeric_10_1 SELEX - 156265559 156265568 5.0E-06 ATTAAATGGT 10 TFEB_bHLH_full_dimeric_10_1 SELEX + 156265474 156265483 8.0E-06 GTCACATGAC 10 NRF1_NRF_full_dimeric_12_1 SELEX - 156261301 156261312 7.0E-06 TGAGCATGCGCT 12 ELF5_MA0136.1 JASPAR + 156265542 156265550 5.0E-06 AATTTCCTT 9 Zfx_MA0146.1 JASPAR - 156261478 156261491 4.0E-06 CGGTCCTAGGCCTG 14 V_HNF3B_01_M00131 TRANSFAC + 156265520 156265534 6.0E-06 CAAACTATTTGCTTT 15 V_TCF3_01_M01594 TRANSFAC + 156265582 156265594 7.0E-06 GCTTTGTATTCTA 13 V_ZFX_01_M01593 TRANSFAC + 156261475 156261490 1.0E-05 CCCCAGGCCTAGGACC 16 V_HMGIY_Q3_M01010 TRANSFAC - 156265536 156265550 0.0E+00 AAGGAAATTTTTTTA 15 V_HMGIY_Q3_M01010 TRANSFAC - 156265537 156265551 1.0E-06 AAAGGAAATTTTTTT 15 V_BCL6_01_M01183 TRANSFAC + 156265531 156265546 2.0E-06 CTTTTTAAAAAAATTT 16 V_MAFB_05_M02775 TRANSFAC - 156265548 156265564 5.0E-06 AATGGTGCTGACGAAAG 17 V_SP1_Q6_01_M00931 TRANSFAC - 156261371 156261380 4.0E-06 GGGGCGGGGC 10 V_HNF4ALPHA_Q6_M00638 TRANSFAC + 156261189 156261201 2.0E-06 CTGACCTTTGCCG 13 V_AP2_Q6_01_M00915 TRANSFAC + 156261471 156261483 9.0E-06 TCGCCCCCAGGCC 13 V_HNF3_Q6_01_M01012 TRANSFAC + 156265520 156265537 1.0E-06 CAAACTATTTGCTTTTTA 18 V_PPAR_DR1_Q2_M00763 TRANSFAC + 156261190 156261202 7.0E-06 TGACCTTTGCCGT 13 V_COUPTF_Q6_M01036 TRANSFAC + 156261185 156261207 2.0E-06 CTGGCTGACCTTTGCCGTGGGCC 23 V_TCFAP2E_04_M02926 TRANSFAC + 156265532 156265545 6.0E-06 TTTTTAAAAAAATT 14 V_ELF4_04_M02850 TRANSFAC + 156265530 156265546 1.0E-06 GCTTTTTAAAAAAATTT 17 V_ELF4_04_M02850 TRANSFAC + 156265531 156265547 2.0E-06 CTTTTTAAAAAAATTTC 17 V_ELF4_04_M02850 TRANSFAC + 156265532 156265548 2.0E-06 TTTTTAAAAAAATTTCC 17 V_GC_01_M00255 TRANSFAC - 156261369 156261382 4.0E-06 CAGGGGCGGGGCCT 14 V_PR_Q2_M00960 TRANSFAC + 156265573 156265582 9.0E-06 TAAAGAACAG 10 V_GCM1_04_M02862 TRANSFAC - 156261081 156261097 7.0E-06 AGTAGATAGGGGAGGCA 17 V_COUP_01_M00158 TRANSFAC + 156261190 156261203 6.0E-06 TGACCTTTGCCGTG 14 V_NKX61_01_M00424 TRANSFAC + 156265561 156265573 3.0E-06 CATTTAATGTATT 13 V_HES1_Q2_M01009 TRANSFAC + 156261447 156261461 9.0E-06 GAACCTTGTGGCCAG 15 V_SP1_Q6_M00196 TRANSFAC - 156261370 156261382 4.0E-06 CAGGGGCGGGGCC 13 V_AP2BETA_Q3_M01858 TRANSFAC - 156261473 156261488 8.0E-06 TCCTAGGCCTGGGGGC 16 V_HNF3_Q6_M00791 TRANSFAC - 156265523 156265535 1.0E-06 AAAAGCAAATAGT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 156265525 156265535 1.0E-06 TATTTGCTTTT 11 V_PAX5_01_M00143 TRANSFAC + 156261666 156261693 9.0E-06 GCCAGGACCAGGGGAGAGGCACAGCTCC 28 V_SFPI1_04_M02896 TRANSFAC - 156265276 156265289 9.0E-06 AAGTTTCAGGAAAC 14 V_ARID3A_04_M02735 TRANSFAC + 156265531 156265547 1.0E-05 CTTTTTAAAAAAATTTC 17 V_TBP_06_M02814 TRANSFAC + 156265530 156265545 2.0E-06 GCTTTTTAAAAAAATT 16 V_IRX3_01_M01318 TRANSFAC - 156261274 156261290 9.0E-06 CACGAACATGTAGTAGA 17 V_IRX5_01_M01472 TRANSFAC - 156261274 156261290 8.0E-06 CACGAACATGTAGTAGA 17 V_SP4_Q5_M01273 TRANSFAC + 156261371 156261381 8.0E-06 GCCCCGCCCCT 11 V_ELF1_Q6_M00746 TRANSFAC + 156265599 156265610 9.0E-06 AAAACAGGAAAC 12 V_TFEB_01_M01768 TRANSFAC + 156265474 156265483 8.0E-06 GTCACATGAC 10 V_TFEB_01_M01768 TRANSFAC - 156265474 156265483 8.0E-06 GTCATGTGAC 10 V_CAAT_C_M00200 TRANSFAC + 156261118 156261142 8.0E-06 GCCAATCAGCTGACGCGCTTCCCTC 25 V_PLAG1_01_M01778 TRANSFAC - 156261503 156261518 6.0E-06 GGGGCAGTAGCAGGGT 16 NR1H2_RXRA_MA0115.1 JASPAR - 156261188 156261204 9.0E-06 CCACGGCAAAGGTCAGC 17 V_TCF7_04_M02921 TRANSFAC + 156265530 156265544 9.0E-06 GCTTTTTAAAAAAAT 15 V_VDR_Q6_M00961 TRANSFAC + 156261441 156261452 8.0E-06 ATCTTTGAACCT 12 V_MEF3_B_M00319 TRANSFAC - 156261146 156261158 1.0E-06 GGGTCAGGCTACT 13 V_PBX_Q3_M00998 TRANSFAC - 156261527 156261538 1.0E-06 GATTGATTGGAG 12 V_NUR77_Q5_M01217 TRANSFAC + 156261189 156261198 7.0E-06 CTGACCTTTG 10 V_SRF_06_M02916 TRANSFAC + 156265531 156265547 8.0E-06 CTTTTTAAAAAAATTTC 17 V_FOXJ2_01_M00422 TRANSFAC - 156265520 156265537 5.0E-06 TAAAAAGCAAATAGTTTG 18 V_EKLF_Q5_M01874 TRANSFAC + 156265183 156265192 5.0E-06 CCACACCCTC 10 V_SOX1_03_M02802 TRANSFAC - 156265562 156265577 1.0E-06 CTTTAATACATTAAAT 16 V_PAX4_02_M00377 TRANSFAC + 156265538 156265548 5.0E-06 AAAAAATTTCC 11 V_TFE_Q6_M01029 TRANSFAC - 156265475 156265482 1.0E-05 TCATGTGA 8 V_SP1_Q2_01_M00933 TRANSFAC + 156261372 156261381 7.0E-06 CCCCGCCCCT 10 V_ELF5_04_M02241 TRANSFAC + 156265542 156265550 5.0E-06 AATTTCCTT 9 V_GATA1_02_M00126 TRANSFAC - 156261085 156261098 3.0E-06 GAGTAGATAGGGGA 14 V_SP1_Q4_01_M00932 TRANSFAC - 156261370 156261382 3.0E-06 CAGGGGCGGGGCC 13 V_EHF_07_M02849 TRANSFAC + 156265539 156265554 8.0E-06 AAAAATTTCCTTTCGT 16 V_ESR2_01_M02377 TRANSFAC - 156261143 156261160 4.0E-06 AAGGGTCAGGCTACTCTC 18 V_OCT4_01_M01125 TRANSFAC - 156265526 156265540 3.0E-06 TTTTAAAAAGCAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.