Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TUBA3E Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 112714 tubulin, alpha 3e chr2 - 130955534 - 130961034 130956034 Transcription Factor Binding Sites   Download all TFBS in the TUBA3E promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 130953827 130953835 6.0E-06 GTGATAAAA 9 NFIA_NFI_full_dimeric_15_1 SELEX + 130960215 130960229 4.0E-06 TTGGCTCCTTGCCAT 15 NFIA_NFI_full_dimeric_15_1 SELEX - 130960215 130960229 4.0E-06 ATGGCAAGGAGCCAA 15 NFIX_NFI_full_dimeric_15_2 SELEX + 130960215 130960229 2.0E-06 TTGGCTCCTTGCCAT 15 NFIX_NFI_full_dimeric_15_2 SELEX - 130960215 130960229 2.0E-06 ATGGCAAGGAGCCAA 15 NFIB_NFI_full_dimeric_15_1 SELEX + 130960215 130960229 3.0E-06 TTGGCTCCTTGCCAT 15 NFIB_NFI_full_dimeric_15_1 SELEX - 130960215 130960229 4.0E-06 ATGGCAAGGAGCCAA 15 V_NF1_Q6_01_M00806 TRANSFAC - 130953834 130953850 3.0E-06 ATGGTCAAATGCCAAGT 17 V_NF1_Q6_01_M00806 TRANSFAC - 130960213 130960229 7.0E-06 ATGGCAAGGAGCCAAGC 17 V_NF1A_Q6_M02103 TRANSFAC + 130960215 130960230 0.0E+00 TTGGCTCCTTGCCATG 16 V_ACAAT_B_M00309 TRANSFAC - 130953817 130953825 8.0E-06 CATTGGTGG 9 V_NKX26_01_M01322 TRANSFAC - 130960039 130960054 9.0E-06 AAAGCCTCTTAAGCCT 16 V_NEUROD_02_M01288 TRANSFAC - 130959944 130959955 3.0E-06 TAGCTGCTGTGT 12 V_AIRE_01_M00999 TRANSFAC + 130960022 130960047 7.0E-06 TTGGTTCTGGGTGAGAAAGGCTTAAG 26 V_STAT1STAT1_Q3_M01212 TRANSFAC + 130953977 130953989 8.0E-06 ATTTCAAGGCAAC 13 V_VMAF_01_M00035 TRANSFAC - 130960265 130960283 7.0E-06 AGATGATGACTGTGAAGTG 19 V_CTF1_01_M01196 TRANSFAC - 130960215 130960228 1.0E-06 TGGCAAGGAGCCAA 14 V_CTF1_01_M01196 TRANSFAC + 130960216 130960229 4.0E-06 TGGCTCCTTGCCAT 14 TLX1_NFIC_MA0119.1 JASPAR - 130960215 130960228 1.0E-06 TGGCAAGGAGCCAA 14 TLX1_NFIC_MA0119.1 JASPAR + 130960216 130960229 4.0E-06 TGGCTCCTTGCCAT 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.