Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CA5B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 11238 carbonic anhydrase VB, mitochondrial chrX + 15751411 - 15756911 15756411 Transcription Factor Binding Sites   Download all TFBS in the CA5B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 15758188 15758198 1.0E-06 AATGACTCATT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 15758188 15758198 2.0E-06 AATGAGTCATT 11 SP8_C2H2_DBD_monomeric_12_1 SELEX - 15756189 15756200 3.0E-06 GCCACGCCCCCA 12 SP8_C2H2_DBD_monomeric_12_1 SELEX - 15756327 15756338 3.0E-06 GCCACGCCCCCA 12 SP3_C2H2_DBD_monomeric_11_1 SELEX - 15756190 15756200 3.0E-06 GCCACGCCCCC 11 SP3_C2H2_DBD_monomeric_11_1 SELEX - 15756210 15756220 1.0E-05 GCCACGCCCCT 11 SP3_C2H2_DBD_monomeric_11_1 SELEX - 15756328 15756338 3.0E-06 GCCACGCCCCC 11 SP3_C2H2_DBD_monomeric_11_1 SELEX - 15756347 15756357 1.0E-05 GCCACGCCCCT 11 MYF6_bHLH_full_dimeric_10_1 SELEX + 15754701 15754710 6.0E-06 GACAACTGTT 10 MYF6_bHLH_full_dimeric_10_1 SELEX - 15754701 15754710 7.0E-06 AACAGTTGTC 10 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 15756190 15756200 1.0E-06 GCCACGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 15756210 15756220 7.0E-06 GCCACGCCCCT 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 15756328 15756338 1.0E-06 GCCACGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 15756347 15756357 7.0E-06 GCCACGCCCCT 11 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 15756345 15756358 2.0E-06 GGCCACGCCCCTCA 14 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 15756385 15756398 5.0E-06 AGCTACGCCCCCTC 14 FOXL1_forkhead_full_dimeric_13_1 SELEX + 15758165 15758177 9.0E-06 ATTTAATAAATAC 13 SOX8_HMG_full_dimeric_15_1 SELEX + 15755910 15755924 6.0E-06 GACACGTTCAGTGTT 15 POU2F2_POU_DBD_monomeric_11_1 SELEX - 15755493 15755503 3.0E-06 TCATGCAAATT 11 KLF13_C2H2_full_monomeric_18_1 SELEX - 15756185 15756202 3.0E-06 GGGCCACGCCCCCATTCA 18 KLF13_C2H2_full_monomeric_18_1 SELEX - 15756205 15756222 4.0E-06 CAGCCACGCCCCTCTCGC 18 KLF13_C2H2_full_monomeric_18_1 SELEX - 15756225 15756242 7.0E-06 TGGCCACACCCCTTTAGC 18 KLF13_C2H2_full_monomeric_18_1 SELEX - 15756323 15756340 3.0E-06 AGGCCACGCCCCCACCTG 18 KLF13_C2H2_full_monomeric_18_1 SELEX - 15756342 15756359 1.0E-06 GGGCCACGCCCCTCAATG 18 KLF13_C2H2_full_monomeric_18_1 SELEX - 15756382 15756399 2.0E-06 AAGCTACGCCCCCTCGTG 18 POU3F3_POU_DBD_monomeric_13_1 SELEX - 15755492 15755504 2.0E-06 TTCATGCAAATTT 13 Sox17_HMG_DBD_dimeric_15_2 SELEX - 15755485 15755499 8.0E-06 GCAAATTTCATTTAT 15 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 15755921 15755931 5.0E-06 GGAAACAAACA 11 SP1_MA0079.2 JASPAR - 15756091 15756100 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 15756088 15756104 4.0E-06 CTGGCCCCGCCCCCGCC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 15756187 15756203 2.0E-06 CGGGCCACGCCCCCATT 17 SP4_C2H2_full_monomeric_17_1 SELEX - 15756207 15756223 3.0E-06 ACAGCCACGCCCCTCTC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 15756227 15756243 9.0E-06 CTGGCCACACCCCTTTA 17 SP4_C2H2_full_monomeric_17_1 SELEX - 15756325 15756341 0.0E+00 GAGGCCACGCCCCCACC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 15756384 15756400 2.0E-06 GAAGCTACGCCCCCTCG 17 NFATC1_NFAT_full_dimeric_20_1 SELEX + 15755990 15756009 7.0E-06 GAGGGAAAGTCACTTTTTAG 20 NFATC1_NFAT_full_dimeric_20_1 SELEX - 15758207 15758226 4.0E-06 CGTGGAAACAAAGATTTTGA 20 SP1_C2H2_DBD_monomeric_11_1 SELEX - 15756190 15756200 5.0E-06 GCCACGCCCCC 11 SP1_C2H2_DBD_monomeric_11_1 SELEX - 15756328 15756338 5.0E-06 GCCACGCCCCC 11 POU1F1_POU_DBD_monomeric_17_1 SELEX + 15758182 15758198 5.0E-06 TTTATGAATGACTCATT 17 POU3F1_POU_DBD_monomeric_12_1 SELEX - 15755492 15755503 4.0E-06 TCATGCAAATTT 12 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 15756325 15756339 7.0E-06 GGCCACGCCCCCACC 15 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 15756344 15756358 2.0E-06 GGCCACGCCCCTCAA 15 JDP2_bZIP_full_dimeric_9_1 SELEX + 15758189 15758197 2.0E-06 ATGACTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 15758189 15758197 4.0E-06 ATGAGTCAT 9 POU2F1_POU_DBD_monomeric_12_1 SELEX - 15755493 15755504 4.0E-06 TTCATGCAAATT 12 POU3F2_POU_DBD_monomeric_12_1 SELEX - 15755492 15755503 4.0E-06 TCATGCAAATTT 12 Hic1_C2H2_DBD_dimeric_18_1 SELEX - 15756248 15756265 3.0E-06 GTGCCAGTCTCTGCCCTC 18 V_AREB6_01_M00412 TRANSFAC - 15756470 15756482 5.0E-06 TCCTTACCTGAGC 13 V_KLF15_Q2_M01714 TRANSFAC + 15756186 15756199 3.0E-06 GAATGGGGGCGTGG 14 V_TGIF_01_M00418 TRANSFAC - 15754697 15754707 4.0E-06 AGTTGTCAGAA 11 V_AP1_Q2_M00173 TRANSFAC + 15758188 15758198 6.0E-06 AATGACTCATT 11 V_DBX1_01_M01483 TRANSFAC + 15758160 15758176 0.0E+00 TTGTCATTTAATAAATA 17 V_DBX1_01_M01483 TRANSFAC + 15758164 15758180 3.0E-06 CATTTAATAAATACAAG 17 V_FREAC7_01_M00293 TRANSFAC + 15758165 15758180 8.0E-06 ATTTAATAAATACAAG 16 V_CDX2_Q5_01_M01659 TRANSFAC + 15755482 15755492 3.0E-06 TCAATAAATGA 11 V_CDX2_Q5_01_M01659 TRANSFAC + 15758167 15758177 3.0E-06 TTAATAAATAC 11 V_XFD1_01_M00267 TRANSFAC + 15758167 15758180 6.0E-06 TTAATAAATACAAG 14 V_STAT3STAT3_Q3_M01220 TRANSFAC - 15755943 15755956 5.0E-06 GTGCTGGGAACAGG 14 V_ZEC_01_M01081 TRANSFAC + 15756818 15756830 6.0E-06 CAAGGTTGGTTGA 13 V_LBX2_01_M01401 TRANSFAC + 15758163 15758179 9.0E-06 TCATTTAATAAATACAA 17 V_SP1_Q6_01_M00931 TRANSFAC + 15756092 15756101 4.0E-06 GGGGCGGGGC 10 V_OCT1_Q5_01_M00930 TRANSFAC + 15755492 15755502 9.0E-06 AAATTTGCATG 11 V_OCT1_01_M00135 TRANSFAC - 15755489 15755507 1.0E-06 TCATTCATGCAAATTTCAT 19 V_POU2F3_01_M01476 TRANSFAC - 15755490 15755505 2.0E-06 ATTCATGCAAATTTCA 16 V_RFX4_03_M02789 TRANSFAC - 15756810 15756824 8.0E-06 AACCTTGGCAACCCT 15 V_P53_DECAMER_Q2_M00761 TRANSFAC - 15755450 15755459 7.0E-06 AGACAAGCCT 10 V_SP1_03_M02281 TRANSFAC - 15756091 15756100 7.0E-06 CCCCGCCCCC 10 V_HFH4_01_M00742 TRANSFAC - 15758167 15758179 8.0E-06 TTGTATTTATTAA 13 V_CDX_Q5_M00991 TRANSFAC + 15758172 15758189 3.0E-06 AAATACAAGATTTATGAA 18 V_PAX_Q6_M00808 TRANSFAC + 15756934 15756944 5.0E-06 CTGGAACTCCC 11 V_HNF1_C_M00206 TRANSFAC + 15758161 15758177 0.0E+00 TGTCATTTAATAAATAC 17 V_KLF7_04_M02877 TRANSFAC - 15756364 15756380 6.0E-06 CCTGTTACGCCCCACAT 17 V_AP1_Q6_M00174 TRANSFAC + 15758188 15758198 0.0E+00 AATGACTCATT 11 V_WT1_Q6_01_M02036 TRANSFAC - 15756088 15756097 4.0E-06 CGCCCCCGCC 10 V_BACH1_01_M00495 TRANSFAC - 15758186 15758200 8.0E-06 TCAATGAGTCATTCA 15 V_GC_01_M00255 TRANSFAC + 15756327 15756340 6.0E-06 TGGGGGCGTGGCCT 14 V_GC_01_M00255 TRANSFAC + 15756386 15756399 3.0E-06 AGGGGGCGTAGCTT 14 V_MTERF_01_M01245 TRANSFAC + 15756260 15756273 1.0E-06 TGGCACAGTTTGGT 14 V_HNF3G_Q4_M02015 TRANSFAC + 15755921 15755928 7.0E-06 TGTTTGTT 8 V_SOX8_04_M02912 TRANSFAC - 15755494 15755507 6.0E-06 TCATTCATGCAAAT 14 V_KROX_Q6_M00982 TRANSFAC - 15756086 15756099 6.0E-06 CCCGCCCCCGCCGG 14 V_PXRRXR_02_M01153 TRANSFAC + 15758146 15758153 1.0E-05 AGAGTTCA 8 V_AP1_Q6_01_M00925 TRANSFAC + 15758189 15758197 4.0E-06 ATGACTCAT 9 V_AP1_Q4_M00188 TRANSFAC + 15758188 15758198 8.0E-06 AATGACTCATT 11 V_SP1_Q6_M00196 TRANSFAC + 15756090 15756102 1.0E-06 CGGGGGCGGGGCC 13 V_EGR1_Q6_M01873 TRANSFAC + 15756089 15756098 4.0E-06 GCGGGGGCGG 10 V_SOX_Q6_M01014 TRANSFAC + 15758212 15758224 3.0E-06 ATCTTTGTTTCCA 13 V_PAX5_01_M00143 TRANSFAC + 15756119 15756146 1.0E-05 GCGTGGCCCAGGCTAGAGGGAAGAGCCC 28 V_JUNDM2_04_M02876 TRANSFAC + 15758185 15758200 2.0E-06 ATGAATGACTCATTGA 16 V_JUNDM2_04_M02876 TRANSFAC - 15758186 15758201 7.0E-06 CTCAATGAGTCATTCA 16 V_OCT1_04_M00138 TRANSFAC - 15755487 15755509 1.0E-06 ACTCATTCATGCAAATTTCATTT 23 V_HBP1_03_M02762 TRANSFAC + 15758182 15758197 4.0E-06 TTTATGAATGACTCAT 16 V_PAX8_01_M00717 TRANSFAC + 15755491 15755505 7.0E-06 GAAATTTGCATGAAT 15 V_AP1_C_M00199 TRANSFAC + 15755504 15755512 3.0E-06 ATGAGTCAG 9 V_AP1_C_M00199 TRANSFAC - 15758189 15758197 8.0E-06 ATGAGTCAT 9 V_KLF7_03_M02773 TRANSFAC - 15756188 15756203 9.0E-06 CGGGCCACGCCCCCAT 16 V_KLF7_03_M02773 TRANSFAC - 15756208 15756223 4.0E-06 ACAGCCACGCCCCTCT 16 V_KLF7_03_M02773 TRANSFAC - 15756228 15756243 5.0E-06 CTGGCCACACCCCTTT 16 V_KLF7_03_M02773 TRANSFAC - 15756345 15756360 8.0E-06 AGGGCCACGCCCCTCA 16 V_NCX_02_M01420 TRANSFAC + 15758160 15758176 0.0E+00 TTGTCATTTAATAAATA 17 V_ARID3A_04_M02735 TRANSFAC - 15758162 15758178 6.0E-06 TGTATTTATTAAATGAC 17 V_ARID3A_04_M02735 TRANSFAC + 15758163 15758179 6.0E-06 TCATTTAATAAATACAA 17 V_AP1_01_M00517 TRANSFAC + 15755502 15755514 1.0E-06 GAATGAGTCAGAG 13 V_AP1_01_M00517 TRANSFAC - 15758187 15758199 5.0E-06 CAATGAGTCATTC 13 V_OCT1_B_M00342 TRANSFAC - 15755493 15755502 4.0E-06 CATGCAAATT 10 V_OCT_Q6_M00795 TRANSFAC + 15755492 15755502 7.0E-06 AAATTTGCATG 11 V_PAX8_B_M00328 TRANSFAC + 15758179 15758196 9.0E-06 AGATTTATGAATGACTCA 18 V_SOX17_04_M02904 TRANSFAC - 15755495 15755511 4.0E-06 TGACTCATTCATGCAAA 17 V_SP4_Q5_M01273 TRANSFAC - 15756091 15756101 1.0E-06 GCCCCGCCCCC 11 V_AP1_Q4_01_M00926 TRANSFAC - 15758189 15758196 1.0E-05 TGAGTCAT 8 V_MTF1_06_M02882 TRANSFAC + 15758165 15758178 6.0E-06 ATTTAATAAATACA 14 V_PKNOX2_01_M01411 TRANSFAC + 15756711 15756726 3.0E-06 AAACGGCTGTCATCCT 16 V_OCT2_01_M01368 TRANSFAC - 15755490 15755505 3.0E-06 ATTCATGCAAATTTCA 16 V_SP4_04_M02914 TRANSFAC + 15756114 15756128 6.0E-06 CAGAGGCGTGGCCCA 15 V_ZSCAN4_04_M02942 TRANSFAC + 15755949 15755964 5.0E-06 CCCAGCACATAAAGTC 16 V_FRA1_Q5_M01267 TRANSFAC - 15758189 15758196 1.0E-05 TGAGTCAT 8 V_FPM315_01_M01587 TRANSFAC + 15756172 15756183 4.0E-06 GAGGGAGCAGGG 12 V_P53_04_M01652 TRANSFAC - 15755440 15755459 9.0E-06 AGACAAGCCTCAAGAAGCTT 20 V_FOX_Q2_M00809 TRANSFAC - 15758167 15758179 8.0E-06 TTGTATTTATTAA 13 V_OCT1_07_M00248 TRANSFAC - 15755493 15755504 3.0E-06 TTCATGCAAATT 12 V_IRF1_Q6_01_M01881 TRANSFAC - 15755484 15755497 5.0E-06 AAATTTCATTTATT 14 V_MYF6_03_M02781 TRANSFAC - 15754699 15754714 1.0E-06 CCAGAACAGTTGTCAG 16 V_HFH3_01_M00289 TRANSFAC - 15758167 15758179 6.0E-06 TTGTATTTATTAA 13 V_NFE2_01_M00037 TRANSFAC + 15755933 15755943 2.0E-06 TACTGAGTCAC 11 V_RFX3_04_M02788 TRANSFAC - 15756806 15756828 6.0E-06 AACCAACCTTGGCAACCCTACCT 23 V_PIT1_Q6_M00802 TRANSFAC - 15758174 15758191 6.0E-06 CATTCATAAATCTTGTAT 18 V_SOX15_04_M02903 TRANSFAC + 15755485 15755499 1.0E-06 ATAAATGAAATTTGC 15 V_SP1_Q2_01_M00933 TRANSFAC - 15756091 15756100 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 15756088 15756101 2.0E-06 GGCGGGGGCGGGGC 14 V_MAFK_04_M02880 TRANSFAC + 15755489 15755503 4.0E-06 ATGAAATTTGCATGA 15 V_SP1_Q4_01_M00932 TRANSFAC + 15756090 15756102 1.0E-06 CGGGGGCGGGGCC 13 V_DMRT1_01_M01146 TRANSFAC - 15756950 15756964 4.0E-06 CGGATACAATGCAGA 15 V_TCF11_01_M00285 TRANSFAC + 15756719 15756731 8.0E-06 GTCATCCTTTAAG 13 V_TCF11_01_M00285 TRANSFAC + 15758162 15758174 2.0E-06 GTCATTTAATAAA 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.