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CHM Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1121 choroideremia (Rab escort protein 1) chrX - 85302066 - 85307566 85302566 Transcription Factor Binding Sites   Download all TFBS in the CHM promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PAX6_PAX_DBD_monomeric_19_1 SELEX + 85306873 85306891 3.0E-06 TTGCATGGATGAATAAACA 19 FOXO3_MA0157.1 JASPAR - 85302692 85302699 7.0E-06 TGTAAACA 8 FOXD1_MA0031.1 JASPAR - 85302691 85302698 7.0E-06 GTAAACAT 8 EWSR1-FLI1_MA0149.1 JASPAR - 85302353 85302370 2.0E-06 GAAAGGAAGTGAGGTAGT 18 Pax4_MA0068.1 JASPAR - 85302764 85302793 1.0E-06 GAATAAAAATCTACATTTCTTTCCTACTTC 30 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 85302686 85302699 8.0E-06 TTAAAATGTTTACA 14 ONECUT1_CUT_full_monomeric_14_1 SELEX + 85302116 85302129 3.0E-06 TTGAAATCAATAAG 14 CUX2_CUT_DBD_monomeric_10_1 SELEX + 85302119 85302128 8.0E-06 AAATCAATAA 10 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 85306881 85306891 1.0E-05 ATGAATAAACA 11 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 85302116 85302129 5.0E-06 TTGAAATCAATAAG 14 TFEB_bHLH_full_dimeric_10_1 SELEX - 85302552 85302561 8.0E-06 GTCACATGAC 10 NFATC1_NFAT_full_dimeric_15_1 SELEX + 85302209 85302223 1.0E-05 TTCCCTCTAAGGAAA 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 85302209 85302223 9.0E-06 TTTCCTTAGAGGGAA 15 YY2_C2H2_full_monomeric_11_1 SELEX + 85302529 85302539 2.0E-06 TCCGCCATCTT 11 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 85302622 85302637 0.0E+00 CACCCAGAATGCACTG 16 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 85302110 85302120 2.0E-06 TTCAAGGTGAT 11 FOXB1_forkhead_full_monomeric_9_1 SELEX - 85302691 85302699 3.0E-06 TGTAAACAT 9 ELF5_MA0136.1 JASPAR - 85302217 85302225 5.0E-06 AATTTCCTT 9 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 85302428 85302440 1.0E-06 AAAAACAGAAACA 13 NFE2L2_MA0150.1 JASPAR + 85302191 85302201 6.0E-06 ATGACACTGCA 11 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 85302116 85302129 3.0E-06 TTGAAATCAATAAG 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 85302428 85302441 9.0E-06 AAAAACAGAAACAA 14 V_HNF3B_01_M00131 TRANSFAC - 85302614 85302628 2.0E-06 TGCACTGTTTTCTTT 15 V_FREAC7_01_M00293 TRANSFAC + 85306880 85306895 5.0E-06 GATGAATAAACACATT 16 V_FLI1_Q6_M01208 TRANSFAC - 85302358 85302368 9.0E-06 AAGGAAGTGAG 11 V_FOXO3_02_M02270 TRANSFAC - 85302692 85302699 7.0E-06 TGTAAACA 8 V_SOX40_04_M02908 TRANSFAC - 85302675 85302690 7.0E-06 TTTAAATATAATACTG 16 V_XFD1_01_M00267 TRANSFAC - 85302688 85302701 3.0E-06 CGTGTAAACATTTT 14 V_XFD1_01_M00267 TRANSFAC + 85306882 85306895 8.0E-06 TGAATAAACACATT 14 V_SRY_07_M02813 TRANSFAC + 85302675 85302690 6.0E-06 CAGTATTATATTTAAA 16 V_SRY_07_M02813 TRANSFAC - 85302675 85302690 2.0E-06 TTTAAATATAATACTG 16 V_YY1_02_M00069 TRANSFAC + 85302527 85302546 1.0E-06 TATCCGCCATCTTGACGGGA 20 V_STAT3STAT3_Q3_M01220 TRANSFAC + 85302538 85302551 1.0E-06 TTGACGGGAAACGT 14 V_MMEF2_Q6_M00405 TRANSFAC - 85302678 85302693 9.0E-06 CATTTTAAATATAATA 16 V_FOXJ2_02_M00423 TRANSFAC + 85302136 85302149 2.0E-06 ATCATAATGTCTTG 14 V_IRF_Q6_01_M00972 TRANSFAC - 85302366 85302376 6.0E-06 AGAACTGAAAG 11 V_IRF_Q6_01_M00972 TRANSFAC + 85302429 85302439 5.0E-06 AAAACAGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC - 85302363 85302378 4.0E-06 GGAGAACTGAAAGGAA 16 V_CEBP_C_M00201 TRANSFAC - 85302141 85302158 1.0E-06 CGACTTTGGCAAGACATT 18 V_NFAT3_Q3_M01734 TRANSFAC + 85302719 85302728 1.0E-05 TCATTTTCCA 10 V_POU1F1_Q6_M00744 TRANSFAC + 85306881 85306890 6.0E-06 ATGAATAAAC 10 V_FOXO3A_Q1_M01137 TRANSFAC - 85302688 85302699 9.0E-06 TGTAAACATTTT 12 V_SOX11_04_M02899 TRANSFAC + 85302847 85302860 0.0E+00 AAAATTGTTAGGAG 14 V_YY1_Q6_M00793 TRANSFAC + 85302532 85302540 7.0E-06 GCCATCTTG 9 V_HNF3_Q6_01_M01012 TRANSFAC - 85302422 85302439 7.0E-06 GTTTCTGTTTTTTCTGTC 18 V_MAF_Q6_M00648 TRANSFAC - 85302356 85302371 4.0E-06 TGAAAGGAAGTGAGGT 16 V_FOXJ1_03_M02750 TRANSFAC + 85306882 85306897 5.0E-06 TGAATAAACACATTCA 16 V_HTF_01_M00538 TRANSFAC + 85302689 85302712 1.0E-06 AAATGTTTACACGTAAGTTAAAAG 24 V_AIRE_02_M01000 TRANSFAC - 85306855 85306879 2.0E-06 CATGCAAAATTGGGTATGCTGCTTT 25 V_SOX21_03_M02803 TRANSFAC + 85302675 85302690 1.0E-06 CAGTATTATATTTAAA 16 V_SOX21_03_M02803 TRANSFAC - 85302675 85302690 2.0E-06 TTTAAATATAATACTG 16 V_TCFAP2E_04_M02926 TRANSFAC - 85303106 85303119 8.0E-06 AACTGGAACAAATA 14 V_LDSPOLYA_B_M00317 TRANSFAC - 85306880 85306895 0.0E+00 AATGTGTTTATTCATC 16 V_MEF2A_Q6_M02024 TRANSFAC + 85302683 85302692 9.0E-06 TATTTAAAAT 10 V_HNF6_Q6_M00639 TRANSFAC + 85302117 85302128 0.0E+00 TGAAATCAATAA 12 V_STAF_01_M00262 TRANSFAC - 85302618 85302639 0.0E+00 AACACCCAGAATGCACTGTTTT 22 V_PAX9_B_M00329 TRANSFAC + 85306870 85306893 6.0E-06 ATTTTGCATGGATGAATAAACACA 24 V_MRF2_01_M00454 TRANSFAC - 85302632 85302645 6.0E-06 AACTACAACACCCA 14 V_RSRFC4_Q2_M00407 TRANSFAC - 85302676 85302692 2.0E-06 ATTTTAAATATAATACT 17 V_AMEF2_Q6_M00403 TRANSFAC - 85302676 85302693 1.0E-06 CATTTTAAATATAATACT 18 V_CDX2_01_M01449 TRANSFAC + 85303135 85303150 5.0E-06 TCGGGCAATAAATTAG 16 V_HNF3A_01_M01261 TRANSFAC - 85302691 85302700 3.0E-06 GTGTAAACAT 10 V_HNF3_Q6_M00791 TRANSFAC + 85306881 85306893 2.0E-06 ATGAATAAACACA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 85306881 85306891 5.0E-06 TGTTTATTCAT 11 V_YY1_Q6_02_M01035 TRANSFAC + 85302529 85302539 7.0E-06 TCCGCCATCTT 11 V_OCT1_04_M00138 TRANSFAC - 85302678 85302700 3.0E-06 GTGTAAACATTTTAAATATAATA 23 V_REX1_03_M01744 TRANSFAC - 85302528 85302539 5.0E-06 AAGATGGCGGAT 12 V_PPARG_03_M00528 TRANSFAC - 85302453 85302469 5.0E-06 TTCCTGGACAAAGTTTA 17 V_MEF2_04_M00233 TRANSFAC + 85302419 85302440 8.0E-06 ACTGACAGAAAAAACAGAAACA 22 V_PAX8_01_M00717 TRANSFAC + 85306868 85306882 9.0E-06 CAATTTTGCATGGAT 15 V_XFD2_01_M00268 TRANSFAC - 85302688 85302701 9.0E-06 CGTGTAAACATTTT 14 V_ARID3A_04_M02735 TRANSFAC - 85302677 85302693 6.0E-06 CATTTTAAATATAATAC 17 V_TBP_06_M02814 TRANSFAC - 85302675 85302690 2.0E-06 TTTAAATATAATACTG 16 V_TBP_06_M02814 TRANSFAC + 85302677 85302692 6.0E-06 GTATTATATTTAAAAT 16 V_TBP_06_M02814 TRANSFAC - 85302677 85302692 7.0E-06 ATTTTAAATATAATAC 16 V_TBP_06_M02814 TRANSFAC + 85302679 85302694 3.0E-06 ATTATATTTAAAATGT 16 V_TBP_06_M02814 TRANSFAC - 85302679 85302694 4.0E-06 ACATTTTAAATATAAT 16 V_FOXO1_Q5_M01216 TRANSFAC + 85302428 85302436 1.0E-05 AAAAACAGA 9 V_HFH8_01_M00294 TRANSFAC + 85302689 85302701 9.0E-06 AAATGTTTACACG 13 V_HFH8_01_M00294 TRANSFAC - 85306882 85306894 2.0E-06 ATGTGTTTATTCA 13 V_YY1_03_M02044 TRANSFAC + 85302529 85302540 2.0E-06 TCCGCCATCTTG 12 V_MTF1_06_M02882 TRANSFAC - 85302681 85302694 8.0E-06 ACATTTTAAATATA 14 V_POU5F1_01_M01307 TRANSFAC - 85306870 85306879 9.0E-06 CATGCAAAAT 10 V_HOXB8_01_M01451 TRANSFAC + 85303135 85303150 9.0E-06 TCGGGCAATAAATTAG 16 V_TFEB_01_M01768 TRANSFAC + 85302552 85302561 8.0E-06 GTCATGTGAC 10 V_TFEB_01_M01768 TRANSFAC - 85302552 85302561 8.0E-06 GTCACATGAC 10 V_MAX_04_M02881 TRANSFAC + 85302550 85302563 1.0E-06 GTGTCATGTGACTA 14 V_ERR1_Q2_M00511 TRANSFAC - 85302109 85302122 5.0E-06 ATTTCAAGGTGATA 14 V_TCF7L2_04_M02922 TRANSFAC + 85302117 85302132 8.0E-06 TGAAATCAATAAGGAA 16 V_SMAD3_03_M02794 TRANSFAC + 85303118 85303134 1.0E-05 TTAGTCCAGACAGCCAC 17 V_DMRT7_01_M01151 TRANSFAC - 85302428 85302441 5.0E-06 TTGTTTCTGTTTTT 14 V_RSRFC4_01_M00026 TRANSFAC + 85302677 85302692 4.0E-06 GTATTATATTTAAAAT 16 V_PLZF_02_M01075 TRANSFAC - 85302672 85302700 4.0E-06 GTGTAAACATTTTAAATATAATACTGTAG 29 V_IRF1_Q6_01_M01881 TRANSFAC - 85302428 85302441 5.0E-06 TTGTTTCTGTTTTT 14 V_EWSR1FLI1_01_M02252 TRANSFAC - 85302353 85302370 2.0E-06 GAAAGGAAGTGAGGTAGT 18 V_SOX1_03_M02802 TRANSFAC + 85306888 85306903 9.0E-06 AACACATTCAATAAGG 16 V_FOXO1_01_M00473 TRANSFAC + 85306884 85306893 7.0E-06 AATAAACACA 10 V_FREAC4_01_M00292 TRANSFAC + 85306880 85306895 9.0E-06 GATGAATAAACACATT 16 V_NFE2L2_01_M02263 TRANSFAC + 85302191 85302201 6.0E-06 ATGACACTGCA 11 V_FOXO4_01_M00472 TRANSFAC + 85306885 85306895 8.0E-06 ATAAACACATT 11 V_TFE_Q6_M01029 TRANSFAC + 85302553 85302560 1.0E-05 TCATGTGA 8 V_ELF5_04_M02241 TRANSFAC - 85302217 85302225 5.0E-06 AATTTCCTT 9 V_SOX5_07_M02909 TRANSFAC + 85302844 85302860 1.0E-06 AGCAAAATTGTTAGGAG 17 V_ZFP128_04_M02932 TRANSFAC + 85302679 85302692 4.0E-06 ATTATATTTAAAAT 14 V_ZFP128_04_M02932 TRANSFAC - 85302679 85302692 9.0E-06 ATTTTAAATATAAT 14 V_TCF11MAFG_01_M00284 TRANSFAC + 85302186 85302207 2.0E-06 ATTTCATGACACTGCACATCCA 22 V_IRXB3_01_M01377 TRANSFAC - 85302691 85302707 7.0E-06 AACTTACGTGTAAACAT 17 V_PAX4_04_M00380 TRANSFAC - 85302759 85302788 1.0E-05 AAAATCTACATTTCTTTCCTACTTCAACCC 30 V_DMRT5_01_M01150 TRANSFAC - 85302429 85302443 6.0E-06 TCTTGTTTCTGTTTT 15 V_DMRT5_01_M01150 TRANSFAC - 85306842 85306856 8.0E-06 TTCTGTTACTATGAC 15 V_SOX14_03_M02798 TRANSFAC + 85302675 85302690 7.0E-06 CAGTATTATATTTAAA 16 V_SOX14_03_M02798 TRANSFAC - 85302675 85302690 2.0E-06 TTTAAATATAATACTG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.