Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ERLIN2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 11160 ER lipid raft associated 2 chr8 + 37589096 - 37594696 37594196 Transcription Factor Binding Sites   Download all TFBS in the ERLIN2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HSF2_HSF_DBD_trimeric_13_1 SELEX + 37594647 37594659 3.0E-06 TTCCAGATCATTC 13 SOX21_HMG_DBD_dimeric_15_1 SELEX - 37593609 37593623 3.0E-06 GACAATTTTATTTTT 15 SP3_C2H2_DBD_monomeric_11_1 SELEX - 37594062 37594072 1.0E-05 ACCACACCCCC 11 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 37598031 37598048 4.0E-06 GAAATTATTTAGCCATTG 18 SOX10_HMG_full_dimeric_14_1 SELEX - 37595104 37595117 5.0E-06 CGAATGTGCTGTCA 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 37598032 37598048 6.0E-06 AAATTATTTAGCCATTG 17 SRY_HMG_DBD_dimeric_15_1 SELEX + 37593609 37593623 4.0E-06 AAAAATAAAATTGTC 15 HSF1_HSF_full_trimeric_13_1 SELEX + 37594647 37594659 2.0E-06 TTCCAGATCATTC 13 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 37593606 37593617 0.0E+00 ACTAAAAATAAA 12 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 37595638 37595649 2.0E-06 AATATAAATAGA 12 TBP_MA0108.2 JASPAR - 37595634 37595648 7.0E-06 ATATAAATAGAGATG 15 GLI2_C2H2_DBD_monomeric_14_1 SELEX + 37595393 37595406 1.0E-06 GACCACACACATTT 14 ERG_ETS_full_dimeric_14_1 SELEX + 37593804 37593817 2.0E-06 GAAGGAAATCCGGA 14 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 37593606 37593617 0.0E+00 ACTAAAAATAAA 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 37595638 37595649 1.0E-06 AATATAAATAGA 12 SOX8_HMG_DBD_dimeric_14_1 SELEX - 37595104 37595117 9.0E-06 CGAATGTGCTGTCA 14 Sox17_HMG_DBD_dimeric_15_1 SELEX + 37593609 37593623 5.0E-06 AAAAATAAAATTGTC 15 Sox17_HMG_DBD_dimeric_15_1 SELEX - 37593609 37593623 4.0E-06 GACAATTTTATTTTT 15 NR2F1_MA0017.1 JASPAR + 37594622 37594635 3.0E-06 TGAACTTTGCAGTC 14 MEF2B_MADS_full_dimeric_12_1 SELEX + 37593606 37593617 1.0E-06 ACTAAAAATAAA 12 MEF2B_MADS_full_dimeric_12_1 SELEX - 37595638 37595649 2.0E-06 AATATAAATAGA 12 CUX1_CUT_DBD_dimeric_18_1 SELEX + 37594085 37594102 1.0E-05 ATTGATGGCGTCATCGAA 18 CUX1_CUT_DBD_dimeric_18_1 SELEX - 37594085 37594102 2.0E-06 TTCGATGACGCCATCAAT 18 MEF2A_MA0052.1 JASPAR - 37593607 37593616 2.0E-06 TTATTTTTAG 10 MEF2A_MA0052.1 JASPAR + 37595639 37595648 3.0E-06 CTATTTATAT 10 HSF4_HSF_DBD_trimeric_13_1 SELEX + 37594647 37594659 2.0E-06 TTCCAGATCATTC 13 CREB3_bZIP_full_dimeric_14_1 SELEX - 37594087 37594100 4.0E-06 CGATGACGCCATCA 14 SOX18_HMG_full_dimeric_15_1 SELEX + 37593609 37593623 8.0E-06 AAAAATAAAATTGTC 15 SOX18_HMG_full_dimeric_15_1 SELEX - 37593609 37593623 4.0E-06 GACAATTTTATTTTT 15 SOX9_HMG_full_dimeric_16_3 SELEX - 37595103 37595118 3.0E-06 ACGAATGTGCTGTCAC 16 SP1_C2H2_DBD_monomeric_11_1 SELEX - 37594062 37594072 2.0E-06 ACCACACCCCC 11 SOX7_HMG_full_dimeric_17_1 SELEX - 37593608 37593624 2.0E-06 TGACAATTTTATTTTTA 17 MZF1_5-13_MA0057.1 JASPAR - 37597866 37597875 4.0E-06 GGAGGGGGAA 10 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 37598031 37598048 5.0E-06 GAAATTATTTAGCCATTG 18 JDP2_bZIP_full_dimeric_9_1 SELEX + 37595323 37595331 1.0E-05 ATGAGTCAC 9 Myf_MA0055.1 JASPAR - 37595061 37595072 3.0E-06 AGGCAGCTGCAG 12 ELF5_ETS_full_monomeric_11_1 SELEX - 37595575 37595585 4.0E-06 AACAGGAAGTT 11 Sox11_HMG_DBD_dimeric_15_1 SELEX - 37593609 37593623 7.0E-06 GACAATTTTATTTTT 15 Mafb_bZIP_DBD_dimeric_18_1 SELEX - 37594085 37594102 3.0E-06 TTCGATGACGCCATCAAT 18 Sox3_HMG_DBD_dimeric_17_1 SELEX + 37593608 37593624 3.0E-06 TAAAAATAAAATTGTCA 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 37593608 37593624 2.0E-06 TGACAATTTTATTTTTA 17 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 37598031 37598048 6.0E-06 GAAATTATTTAGCCATTG 18 ELF5_MA0136.1 JASPAR + 37595646 37595654 2.0E-06 TATTTCCTT 9 RARG_nuclearreceptor_full_dimeric_16_1 SELEX - 37595370 37595385 7.0E-06 CAGGAGAAAAGGCCAC 16 BATF3_bZIP_DBD_dimeric_14_1 SELEX + 37594087 37594100 2.0E-06 TGATGGCGTCATCG 14 BATF3_bZIP_DBD_dimeric_14_1 SELEX - 37594087 37594100 3.0E-06 CGATGACGCCATCA 14 FLI1_ETS_full_monomeric_14_1 SELEX + 37593804 37593817 2.0E-06 GAAGGAAATCCGGA 14 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 37595640 37595652 3.0E-06 GGAAATATAAATA 13 V_FOXP1_01_M00987 TRANSFAC - 37593768 37593787 2.0E-06 TGGTTCGTTTTGGTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 37595639 37595658 1.0E-06 CTATTTATATTTCCTTGAAT 20 V_AP1_Q2_M00173 TRANSFAC - 37595322 37595332 4.0E-06 AGTGACTCATA 11 V_DBX1_01_M01483 TRANSFAC - 37593604 37593620 4.0E-06 AATTTTATTTTTAGTAA 17 V_DBX1_01_M01483 TRANSFAC - 37598025 37598041 4.0E-06 TAAATAATTTCAAATCA 17 V_FREAC7_01_M00293 TRANSFAC - 37595636 37595651 4.0E-06 GAAATATAAATAGAGA 16 V_HMGIY_Q3_M01010 TRANSFAC + 37598027 37598041 3.0E-06 ATTTGAAATTATTTA 15 V_MTF1_Q4_M00650 TRANSFAC - 37594035 37594048 7.0E-06 TCTGCGCCCCGCCC 14 V_BCL6_01_M01183 TRANSFAC + 37598025 37598040 7.0E-06 TGATTTGAAATTATTT 16 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 37598010 37598021 4.0E-06 ACTAGTTAACAG 12 V_MMEF2_Q6_M00405 TRANSFAC + 37593762 37593777 1.0E-06 GTCTCTAAAAAAACCA 16 V_HOXA13_02_M01297 TRANSFAC + 37593611 37593619 4.0E-06 AAATAAAAT 9 V_SP1_Q6_01_M00931 TRANSFAC + 37594034 37594043 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC + 37593600 37593621 0.0E+00 GTCTTTACTAAAAATAAAATTG 22 V_MEF2_02_M00231 TRANSFAC - 37595634 37595655 5.0E-06 CAAGGAAATATAAATAGAGATG 22 V_HNF4ALPHA_Q6_M00638 TRANSFAC + 37594621 37594633 0.0E+00 CTGAACTTTGCAG 13 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 37595091 37595103 7.0E-06 CTGAACCTTTCCT 13 V_FOXO3A_Q1_M01137 TRANSFAC + 37593608 37593619 1.0E-06 TAAAAATAAAAT 12 V_SOX11_04_M02899 TRANSFAC + 37593615 37593628 2.0E-06 AAAATTGTCAAGTG 14 V_ATF3_Q6_01_M01863 TRANSFAC + 37594089 37594099 9.0E-06 ATGGCGTCATC 11 V_HNF3_Q6_01_M01012 TRANSFAC + 37595635 37595652 5.0E-06 ATCTCTATTTATATTTCC 18 V_MAF_Q6_M00648 TRANSFAC - 37595571 37595586 4.0E-06 TAACAGGAAGTTGCCG 16 V_GABPA_04_M02858 TRANSFAC + 37597861 37597876 2.0E-06 CTCTCTTCCCCCTCCT 16 V_MYB_05_M02779 TRANSFAC - 37594135 37594151 7.0E-06 AAGAAAACCGTCACACC 17 V_JUNDM2_03_M02772 TRANSFAC - 37594086 37594101 9.0E-06 TCGATGACGCCATCAA 16 V_NERF_Q2_M00531 TRANSFAC - 37595569 37595586 9.0E-06 TAACAGGAAGTTGCCGGC 18 V_SP1_02_M01303 TRANSFAC - 37594204 37594214 8.0E-06 GGGGCGGGGGC 11 V_TCFAP2E_04_M02926 TRANSFAC + 37593605 37593618 2.0E-06 TACTAAAAATAAAA 14 V_CDX_Q5_M00991 TRANSFAC - 37595642 37595659 7.0E-06 TATTCAAGGAAATATAAA 18 V_MEF2A_Q6_M02024 TRANSFAC - 37593606 37593615 4.0E-06 TATTTTTAGT 10 V_HNF1_C_M00206 TRANSFAC - 37598028 37598044 2.0E-06 GGCTAAATAATTTCAAA 17 V_RPC155_01_M01798 TRANSFAC + 37593567 37593582 1.0E-06 GCCAGAGTTTGAGACC 16 V_RPC155_01_M01798 TRANSFAC + 37593690 37593705 5.0E-06 CCAGGAGTTCGAGGCT 16 V_ELF4_04_M02850 TRANSFAC + 37593603 37593619 4.0E-06 TTTACTAAAAATAAAAT 17 V_ELF4_04_M02850 TRANSFAC + 37593604 37593620 5.0E-06 TTACTAAAAATAAAATT 17 V_ELF4_04_M02850 TRANSFAC + 37593606 37593622 3.0E-06 ACTAAAAATAAAATTGT 17 V_ELF4_04_M02850 TRANSFAC + 37593763 37593779 4.0E-06 TCTCTAAAAAAACCAAA 17 V_HMBOX1_01_M01456 TRANSFAC - 37598009 37598025 0.0E+00 ATGCACTAGTTAACAGC 17 V_COMP1_01_M00057 TRANSFAC - 37595593 37595616 8.0E-06 GGAAAGCAATGACCAGGAAAGGGA 24 V_MYF_01_M01302 TRANSFAC - 37595061 37595072 3.0E-06 AGGCAGCTGCAG 12 V_ZFP105_03_M02827 TRANSFAC + 37593608 37593622 9.0E-06 TAAAAATAAAATTGT 15 V_COUP_01_M00158 TRANSFAC + 37594622 37594635 3.0E-06 TGAACTTTGCAGTC 14 V_TATA_01_M00252 TRANSFAC - 37595634 37595648 7.0E-06 ATATAAATAGAGATG 15 V_STAT1_01_M00224 TRANSFAC - 37594262 37594282 8.0E-06 CTGAGGTTCCCGAAAGTGACG 21 V_RSRFC4_Q2_M00407 TRANSFAC + 37593604 37593620 0.0E+00 TTACTAAAAATAAAATT 17 V_AMEF2_Q6_M00403 TRANSFAC + 37593762 37593779 0.0E+00 GTCTCTAAAAAAACCAAA 18 V_AP1_Q4_M00188 TRANSFAC - 37595322 37595332 7.0E-06 AGTGACTCATA 11 V_SP1_Q6_M00196 TRANSFAC + 37594032 37594044 2.0E-06 GAGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC - 37594204 37594216 6.0E-06 AAGGGGCGGGGGC 13 V_MYBL1_03_M02780 TRANSFAC - 37594135 37594151 9.0E-06 AAGAAAACCGTCACACC 17 V_MAZ_Q6_01_M02023 TRANSFAC + 37594462 37594475 1.0E-06 CGGGGAGGGAAGGG 14 V_HNF3_Q6_M00791 TRANSFAC - 37595638 37595650 3.0E-06 AAATATAAATAGA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 37595640 37595650 7.0E-06 TATTTATATTT 11 V_HNF1_Q6_01_M01011 TRANSFAC + 37593602 37593622 3.0E-06 CTTTACTAAAAATAAAATTGT 21 V_NKX22_02_M01372 TRANSFAC - 37593617 37593633 4.0E-06 CACGACACTTGACAATT 17 V_MEF2_03_M00232 TRANSFAC + 37593600 37593621 0.0E+00 GTCTTTACTAAAAATAAAATTG 22 V_SZF11_01_M01109 TRANSFAC + 37594521 37594535 1.0E-05 CCACGGTAAAATAAG 15 V_ELF5_01_M01197 TRANSFAC - 37595575 37595585 6.0E-06 AACAGGAAGTT 11 V_ELF5_01_M01197 TRANSFAC - 37595646 37595656 6.0E-06 TCAAGGAAATA 11 V_MEF2_04_M00233 TRANSFAC + 37593600 37593621 0.0E+00 GTCTTTACTAAAAATAAAATTG 22 V_XFD2_01_M00268 TRANSFAC - 37595636 37595649 1.0E-06 AATATAAATAGAGA 14 V_MEF2_Q6_01_M00941 TRANSFAC - 37593607 37593618 5.0E-06 TTTTATTTTTAG 12 V_STAT4_Q5_M02117 TRANSFAC - 37595648 37595657 5.0E-06 TTCAAGGAAA 10 V_TBP_06_M02814 TRANSFAC + 37595636 37595651 6.0E-06 TCTCTATTTATATTTC 16 V_TBP_06_M02814 TRANSFAC + 37595638 37595653 7.0E-06 TCTATTTATATTTCCT 16 V_MZF1_02_M00084 TRANSFAC - 37597866 37597878 1.0E-05 AGAGGAGGGGGAA 13 V_GLI3_01_M01596 TRANSFAC - 37595392 37595402 8.0E-06 GTGTGTGGTCC 11 V_SP4_Q5_M01273 TRANSFAC - 37594033 37594043 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC - 37594056 37594066 7.0E-06 CCCCCGCCCCG 11 V_ZFP105_04_M02931 TRANSFAC - 37598030 37598046 1.0E-06 ATGGCTAAATAATTTCA 17 V_VJUN_01_M00036 TRANSFAC + 37594086 37594101 6.0E-06 TTGATGGCGTCATCGA 16 V_VJUN_01_M00036 TRANSFAC - 37594086 37594101 6.0E-06 TCGATGACGCCATCAA 16 V_ZFP187_04_M02934 TRANSFAC + 37593754 37593769 1.0E-06 GAGACCTTGTCTCTAA 16 V_TBP_01_M00471 TRANSFAC - 37595640 37595647 4.0E-06 TATAAATA 8 V_MRG2_01_M01395 TRANSFAC + 37595018 37595033 9.0E-06 AACTGCCTGTCATTTG 16 V_PKNOX2_01_M01411 TRANSFAC + 37595018 37595033 3.0E-06 AACTGCCTGTCATTTG 16 V_AP1FJ_Q2_M00172 TRANSFAC - 37595322 37595332 4.0E-06 AGTGACTCATA 11 V_FOXL1_04_M02753 TRANSFAC - 37595635 37595651 2.0E-06 GAAATATAAATAGAGAT 17 V_AIRE_01_M00999 TRANSFAC - 37593575 37593600 3.0E-06 CAGGGTCTTGGTATTTCTGGTCTCAA 26 V_TCF7_04_M02921 TRANSFAC + 37593602 37593616 4.0E-06 CTTTACTAAAAATAA 15 V_HNF1B_01_M01425 TRANSFAC + 37598008 37598024 1.0E-06 GGCTGTTAACTAGTGCA 17 V_TCF4_Q5_M00671 TRANSFAC + 37594961 37594968 1.0E-05 CCTTTGAA 8 V_MYB_Q3_M00773 TRANSFAC - 37595017 37595027 9.0E-06 ACAGGCAGTTG 11 V_ASCL2_04_M02841 TRANSFAC - 37594432 37594447 1.0E-05 CCTTCCCCGCCCCGTT 16 V_STAT6_02_M00500 TRANSFAC - 37593806 37593813 1.0E-05 GATTTCCT 8 V_RSRFC4_01_M00026 TRANSFAC - 37593604 37593619 1.0E-06 ATTTTATTTTTAGTAA 16 V_BBX_03_M02739 TRANSFAC + 37595646 37595660 1.0E-05 TATTTCCTTGAATAG 15 V_TITF1_Q3_M00432 TRANSFAC + 37593620 37593629 8.0E-06 TGTCAAGTGT 10 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 37594451 37594465 6.0E-06 CCCGAGGTCACTCGC 15 V_HSF2_02_M01244 TRANSFAC - 37594647 37594659 9.0E-06 GAATGATCTGGAA 13 V_SATB1_01_M01232 TRANSFAC - 37593601 37593612 6.0E-06 TTTTAGTAAAGA 12 V_MEF2_01_M00006 TRANSFAC + 37593605 37593620 9.0E-06 TACTAAAAATAAAATT 16 V_SP1_Q2_01_M00933 TRANSFAC - 37594033 37594042 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 37594206 37594215 7.0E-06 CCCCGCCCCT 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 37594437 37594450 2.0E-06 GGCGGGGAAGGGGC 14 V_ELF5_04_M02241 TRANSFAC + 37595646 37595654 2.0E-06 TATTTCCTT 9 V_SOX5_07_M02909 TRANSFAC + 37593612 37593628 1.0E-06 AATAAAATTGTCAAGTG 17 V_SP1_Q4_01_M00932 TRANSFAC + 37594032 37594044 4.0E-06 GAGGGGCGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC - 37594204 37594216 5.0E-06 AAGGGGCGGGGGC 13 V_TCF3_05_M02920 TRANSFAC - 37595640 37595654 2.0E-06 AAGGAAATATAAATA 15 V_GLIS2_04_M02863 TRANSFAC - 37593601 37593614 2.0E-06 ATTTTTAGTAAAGA 14 V_GLIS2_04_M02863 TRANSFAC - 37595636 37595649 6.0E-06 AATATAAATAGAGA 14 V_STAT1_05_M01260 TRANSFAC - 37595639 37595660 1.0E-05 CTATTCAAGGAAATATAAATAG 22 V_FOXK1_03_M02752 TRANSFAC - 37595635 37595651 8.0E-06 GAAATATAAATAGAGAT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.