Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RABL2B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 11158 RAB, member of RAS oncogene family-like 2B chr22 - 51221587 - 51227087 51222087 Transcription Factor Binding Sites   Download all TFBS in the RABL2B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 51225562 51225572 8.0E-06 GGTGACTCATG 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 51225562 51225572 6.0E-06 CATGAGTCACC 11 TBX21_TBX_full_dimeric_16_1 SELEX + 51225590 51225605 2.0E-06 GGTGATATATGACACA 16 TBX21_TBX_full_dimeric_16_1 SELEX - 51225590 51225605 3.0E-06 TGTGTCATATATCACC 16 GABPA_MA0062.2 JASPAR - 51222056 51222066 1.0E-06 CCGGAAGTGGA 11 SP3_C2H2_DBD_monomeric_11_1 SELEX - 51222238 51222248 6.0E-06 ACCACACCCAC 11 NHLH1_MA0048.1 JASPAR + 51222081 51222092 1.0E-05 TCGCAGCTGCTA 12 ELF4_ETS_full_monomeric_12_1 SELEX - 51222058 51222069 7.0E-06 GAGCCGGAAGTG 12 OTX2_homeodomain_DBD_dimeric_15_1 SELEX + 51223787 51223801 6.0E-06 GATAATGCTCTTAGG 15 ELF3_ETS_full_monomeric_13_1 SELEX - 51222057 51222069 5.0E-06 GAGCCGGAAGTGG 13 SP1_MA0079.2 JASPAR - 51223768 51223777 9.0E-06 CCCCTCCTCC 10 Otx1_homeodomain_DBD_dimeric_15_1 SELEX + 51223787 51223801 8.0E-06 GATAATGCTCTTAGG 15 SP1_C2H2_DBD_monomeric_11_1 SELEX - 51222238 51222248 1.0E-06 ACCACACCCAC 11 TBX20_TBX_full_dimeric_16_1 SELEX + 51225543 51225558 9.0E-06 GAGTCTGAAGTTGTCA 16 EHF_ETS_full_monomeric_12_1 SELEX - 51222058 51222069 1.0E-05 GAGCCGGAAGTG 12 JDP2_bZIP_full_dimeric_9_1 SELEX - 51225563 51225571 1.0E-05 ATGAGTCAC 9 GABPA_ETS_full_monomeric_10_1 SELEX - 51222058 51222067 9.0E-06 GCCGGAAGTG 10 ELF3_ETS_DBD_monomeric_12_1 SELEX - 51222058 51222069 7.0E-06 GAGCCGGAAGTG 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 51222533 51222545 6.0E-06 AAGAAAACACACA 13 NHLH1_bHLH_full_dimeric_10_1 SELEX + 51222082 51222091 4.0E-06 CGCAGCTGCT 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 51222082 51222091 5.0E-06 AGCAGCTGCG 10 V_AML_Q6_M00769 TRANSFAC - 51218899 51218913 9.0E-06 CAGGCTGTGGTGAGC 15 V_BACH2_01_M00490 TRANSFAC - 51225562 51225572 2.0E-06 CATGAGTCACC 11 V_GABP_B_M00341 TRANSFAC - 51222056 51222067 1.0E-06 GCCGGAAGTGGA 12 V_SP1_03_M02281 TRANSFAC - 51223768 51223777 9.0E-06 CCCCTCCTCC 10 V_LDSPOLYA_B_M00317 TRANSFAC - 51222532 51222547 0.0E+00 CTTGTGTGTTTTCTTC 16 V_ER81_02_M02065 TRANSFAC - 51222058 51222067 1.0E-05 GCCGGAAGTG 10 V_GADP_01_M01258 TRANSFAC + 51222058 51222069 0.0E+00 CACTTCCGGCTC 12 V_JUNDM2_04_M02876 TRANSFAC - 51225560 51225575 7.0E-06 TTGCATGAGTCACCGC 16 V_MEIS1_01_M00419 TRANSFAC - 51218861 51218872 5.0E-06 TAGTGACAGAGC 12 V_FPM315_01_M01587 TRANSFAC + 51223765 51223776 4.0E-06 GGAGGAGGAGGG 12 V_EKLF_Q5_M01874 TRANSFAC - 51222238 51222247 9.0E-06 CCACACCCAC 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.