Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KATNA1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 11104 katanin p60 (ATPase containing) subunit A 1 chr6 - 149969440 - 149974940 149969940 Transcription Factor Binding Sites   Download all TFBS in the KATNA1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 149968319 149968331 1.0E-06 ATTAACATTAACA 13 MESP1_bHLH_DBD_dimeric_10_1 SELEX - 149972369 149972378 7.0E-06 AACACCTGCA 10 GABPA_MA0062.2 JASPAR - 149969815 149969825 1.0E-06 CCGGAAGTGAC 11 POU2F1_POU_DBD_dimeric_14_1 SELEX + 149968185 149968198 7.0E-06 TATAAAAATGTAAA 14 FLI1_ETS_full_monomeric_10_1 SELEX - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 ETV5_ETS_DBD_monomeric_10_1 SELEX - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 ERG_ETS_full_monomeric_10_1 SELEX - 149969817 149969826 1.0E-06 ACCGGAAGTG 10 ETV3_ETS_DBD_monomeric_10_1 SELEX - 149969817 149969826 1.0E-06 ACCGGAAGTG 10 En1_MA0027.1 JASPAR - 149968974 149968984 8.0E-06 AAATAGTTTCC 11 POU3F2_POU_DBD_monomeric_13_1 SELEX + 149968984 149968996 7.0E-06 TTTGATTAAATAA 13 FEV_ETS_DBD_monomeric_10_1 SELEX - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 TBP_MA0108.2 JASPAR + 149968944 149968958 8.0E-06 ATATAAAAGCGGCCC 15 EWSR1-FLI1_MA0149.1 JASPAR + 149969675 149969692 5.0E-06 GGCAGCGAGGAAGGAGGG 18 ETV1_ETS_DBD_monomeric_10_1 SELEX - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 Tp73_p53l_DBD_dimeric_18_1 SELEX + 149968305 149968322 9.0E-06 TACAGGCCACAACTTGTT 18 IRF7_IRF_DBD_trimeric_17_1 SELEX - 149968975 149968991 5.0E-06 TAATCAAAAATAGTTTC 17 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 149968319 149968332 5.0E-06 TGTTAATGTTAATA 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 149968319 149968332 2.0E-06 TATTAACATTAACA 14 Klf4_MA0039.2 JASPAR + 149969906 149969915 3.0E-06 AGGGTGTGGC 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 149968319 149968332 6.0E-06 TGTTAATGTTAATA 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 149968319 149968332 3.0E-06 TATTAACATTAACA 14 TCF4_bHLH_full_dimeric_10_1 SELEX - 149972369 149972378 5.0E-06 AACACCTGCA 10 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 149968183 149968192 9.0E-06 CCTATAAAAA 10 ETS1_ETS_full_monomeric_10_1 SELEX - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 POU2F3_POU_DBD_dimeric_12_1 SELEX + 149968186 149968197 7.0E-06 ATAAAAATGTAA 12 ETV4_ETS_DBD_monomeric_10_1 SELEX - 149969817 149969826 4.0E-06 ACCGGAAGTG 10 ELK4_ETS_DBD_monomeric_10_1 SELEX - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 149968319 149968332 7.0E-06 TGTTAATGTTAATA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 149968319 149968332 7.0E-06 TATTAACATTAACA 14 ELK4_MA0076.1 JASPAR - 149969818 149969826 4.0E-06 ACCGGAAGT 9 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 149968183 149968192 4.0E-06 CCTATAAAAA 10 POU1F1_POU_DBD_monomeric_17_1 SELEX + 149968202 149968218 7.0E-06 TTCTTGAATAACCAACG 17 Foxd3_MA0041.1 JASPAR + 149972407 149972418 6.0E-06 GAATATTTGTGT 12 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 149969902 149969916 2.0E-06 GGCCACACCCTCTTC 15 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 149968985 149968997 6.0E-06 CTTATTTAATCAA 13 IRF9_IRF_full_trimeric_15_1 SELEX + 149968029 149968043 8.0E-06 AAAAAAACCCAAACT 15 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 149968319 149968332 6.0E-06 TGTTAATGTTAATA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 149968319 149968332 4.0E-06 TATTAACATTAACA 14 ERF_ETS_DBD_monomeric_10_1 SELEX - 149969817 149969826 1.0E-06 ACCGGAAGTG 10 ELK1_ETS_full_monomeric_10_1 SELEX - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 DUXA_homeodomain_DBD_dimeric_13_1 SELEX - 149968985 149968997 7.0E-06 CTTATTTAATCAA 13 FOXI1_forkhead_full_dimeric_17_1 SELEX + 149968300 149968316 4.0E-06 GTATTTACAGGCCACAA 17 FOXI1_forkhead_full_dimeric_17_1 SELEX + 149968324 149968340 3.0E-06 ATGTTAATACAAAACAA 17 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 149968183 149968192 3.0E-06 CCTATAAAAA 10 GABPA_ETS_full_monomeric_10_1 SELEX - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 Elk3_ETS_DBD_monomeric_10_1 SELEX - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 ETV6_ETS_full_monomeric_10_1 SELEX - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 ETV6_ETS_full_dimeric_15_1 SELEX - 149969817 149969831 2.0E-06 CCGGCACCGGAAGTG 15 NRF1_NRF_full_dimeric_12_1 SELEX + 149969928 149969939 8.0E-06 CGCGCGTGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 149969928 149969939 7.0E-06 TGCGCACGCGCG 12 TP63_p53l_DBD_dimeric_18_1 SELEX - 149968305 149968322 4.0E-06 AACAAGTTGTGGCCTGTA 18 TCF3_bHLH_DBD_dimeric_10_1 SELEX - 149972369 149972378 3.0E-06 AACACCTGCA 10 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 149968183 149968192 4.0E-06 CCTATAAAAA 10 V_NFAT_Q4_01_M00935 TRANSFAC + 149969559 149969568 7.0E-06 CTGGAAAATC 10 V_FOXP1_01_M00987 TRANSFAC - 149968209 149968228 8.0E-06 TTCTTTATAGCGTTGGTTAT 20 V_CEBPG_Q6_M00622 TRANSFAC + 149972354 149972366 6.0E-06 CTGACTTCAAAGA 13 V_ERG_03_M02062 TRANSFAC - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 V_ERM_01_M01992 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_SAP1A_01_M01167 TRANSFAC - 149969817 149969827 1.0E-06 CACCGGAAGTG 11 V_STAT5A_Q6_M01890 TRANSFAC - 149972359 149972371 8.0E-06 GCATTTCTTTGAA 13 V_DBX1_01_M01483 TRANSFAC - 149968979 149968995 0.0E+00 TATTTAATCAAAAATAG 17 V_ELK1_04_M01165 TRANSFAC - 149969817 149969827 1.0E-05 CACCGGAAGTG 11 V_TCF3_01_M01594 TRANSFAC - 149968495 149968507 3.0E-06 TTTTTGTATTTTA 13 V_FLI1_Q6_M01208 TRANSFAC - 149969815 149969825 1.0E-06 CCGGAAGTGAC 11 V_GABPA_02_M02074 TRANSFAC - 149969817 149969826 8.0E-06 ACCGGAAGTG 10 V_FOXD3_01_M00130 TRANSFAC + 149972407 149972418 5.0E-06 GAATATTTGTGT 12 V_CETS1_01_M01986 TRANSFAC - 149969817 149969826 4.0E-06 ACCGGAAGTG 10 V_SOX5_01_M00042 TRANSFAC - 149968042 149968051 2.0E-06 TTAACAATAG 10 V_ETV3_01_M01990 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_MEF2_02_M00231 TRANSFAC + 149968223 149968244 7.0E-06 AAAGAAGCTTTATATAGCTTTT 22 V_MEF2_02_M00231 TRANSFAC - 149968974 149968995 6.0E-06 TATTTAATCAAAAATAGTTTCC 22 V_SRY_02_M00160 TRANSFAC - 149968041 149968052 2.0E-06 ATTAACAATAGT 12 V_POU3F2_02_M00464 TRANSFAC + 149968322 149968331 9.0E-06 TAATGTTAAT 10 V_LHX3_01_M01471 TRANSFAC + 149968981 149968997 5.0E-06 ATTTTTGATTAAATAAG 17 V_LHX3A_01_M00510 TRANSFAC - 149968985 149968994 8.0E-06 ATTTAATCAA 10 V_HOXD13_01_M01404 TRANSFAC + 149968180 149968195 1.0E-06 TTACCTATAAAAATGT 16 V_CDX_Q5_M00991 TRANSFAC + 149968208 149968225 1.0E-06 AATAACCAACGCTATAAA 18 V_CDX_Q5_M00991 TRANSFAC - 149968231 149968248 6.0E-06 TATGAAAAGCTATATAAA 18 V_CETS2_02_M02064 TRANSFAC - 149969817 149969826 6.0E-06 ACCGGAAGTG 10 V_NKX62_Q2_M00489 TRANSFAC + 149967749 149967760 7.0E-06 ATGATAAATACT 12 V_PEA3_01_M01991 TRANSFAC - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 V_STAT4_Q4_M01666 TRANSFAC + 149972359 149972372 1.0E-06 TTCAAAGAAATGCA 14 V_SOX13_03_M02797 TRANSFAC - 149968039 149968054 6.0E-06 CTATTAACAATAGTTT 16 V_FLI1_01_M02038 TRANSFAC - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 V_SOX7_03_M02807 TRANSFAC - 149968035 149968056 6.0E-06 TTCTATTAACAATAGTTTGGGT 22 V_ELK1_06_M02059 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_TCF3_04_M02816 TRANSFAC + 149972354 149972370 7.0E-06 CTGACTTCAAAGAAATG 17 V_ELK1_05_M01981 TRANSFAC - 149969817 149969826 5.0E-06 ACCGGAAGTG 10 V_ZFP105_03_M02827 TRANSFAC - 149968042 149968056 7.0E-06 TTCTATTAACAATAG 15 V_ZFP105_03_M02827 TRANSFAC - 149968979 149968993 0.0E+00 TTTAATCAAAAATAG 15 V_SAP1A_02_M01983 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_FLI1_02_M02073 TRANSFAC - 149969817 149969826 5.0E-06 ACCGGAAGTG 10 V_PET1_02_M02072 TRANSFAC - 149969817 149969826 6.0E-06 ACCGGAAGTG 10 V_TEF_Q6_M00672 TRANSFAC + 149968324 149968335 0.0E+00 ATGTTAATACAA 12 V_TATA_01_M00252 TRANSFAC + 149968944 149968958 8.0E-06 ATATAAAAGCGGCCC 15 V_ERF_01_M01984 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_RSRFC4_Q2_M00407 TRANSFAC - 149968226 149968242 6.0E-06 AAGCTATATAAAGCTTC 17 V_RSRFC4_Q2_M00407 TRANSFAC + 149968227 149968243 5.0E-06 AAGCTTTATATAGCTTT 17 V_HOXA3_07_M02869 TRANSFAC - 149968046 149968059 3.0E-06 AATTTCTATTAACA 14 V_ER81_02_M02065 TRANSFAC - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 V_EVI1_01_M00078 TRANSFAC + 149968986 149969001 4.0E-06 TGATTAAATAAGAGCT 16 V_E47_02_M00071 TRANSFAC + 149972366 149972381 1.0E-06 AAATGCAGGTGTTCAT 16 V_ERG_01_M01752 TRANSFAC - 149969818 149969826 4.0E-06 ACCGGAAGT 9 V_GABPA_01_M02039 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_CETS2_01_M01989 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_MEF2_03_M00232 TRANSFAC + 149968223 149968244 1.0E-06 AAAGAAGCTTTATATAGCTTTT 22 V_SOX18_03_M02801 TRANSFAC + 149968040 149968055 9.0E-06 AACTATTGTTAATAGA 16 V_TATA_C_M00216 TRANSFAC + 149968183 149968192 2.0E-06 CCTATAAAAA 10 V_GADP_01_M01258 TRANSFAC + 149969817 149969828 0.0E+00 CACTTCCGGTGC 12 V_OCT1_04_M00138 TRANSFAC + 149968043 149968065 2.0E-06 TATTGTTAATAGAAATTCAACAA 23 V_OCT1_04_M00138 TRANSFAC + 149968316 149968338 1.0E-05 ACTTGTTAATGTTAATACAAAAC 23 V_OCT1_04_M00138 TRANSFAC + 149968322 149968344 4.0E-06 TAATGTTAATACAAAACAAAGTT 23 V_PET1_01_M02037 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_SP1SP3_Q4_M01219 TRANSFAC + 149969948 149969958 5.0E-06 CCGCCTCCTCC 11 V_TEL2_Q6_M00678 TRANSFAC + 149969816 149969825 9.0E-06 TCACTTCCGG 10 V_TCF7_03_M02817 TRANSFAC + 149972354 149972370 5.0E-06 CTGACTTCAAAGAAATG 17 V_MEF2_Q6_01_M00941 TRANSFAC - 149968230 149968241 6.0E-06 AGCTATATAAAG 12 V_NCX_02_M01420 TRANSFAC + 149968934 149968950 8.0E-06 TTAGTAACTAATATAAA 17 V_NCX_02_M01420 TRANSFAC - 149968979 149968995 1.0E-05 TATTTAATCAAAAATAG 17 V_CETS1P54_01_M00032 TRANSFAC - 149969817 149969826 5.0E-06 ACCGGAAGTG 10 V_HB24_01_M01399 TRANSFAC + 149968979 149968993 6.0E-06 CTATTTTTGATTAAA 15 V_STAT4_Q5_M02117 TRANSFAC + 149972359 149972368 3.0E-06 TTCAAAGAAA 10 V_ARID3A_04_M02735 TRANSFAC - 149968980 149968996 0.0E+00 TTATTTAATCAAAAATA 17 V_ARID3A_04_M02735 TRANSFAC + 149968981 149968997 2.0E-06 ATTTTTGATTAAATAAG 17 V_LMO2COM_01_M00277 TRANSFAC - 149969759 149969770 7.0E-06 CGGCAGGTGGTG 12 V_PEA3_02_M02066 TRANSFAC - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 V_ERF_02_M02061 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_SOX9_B1_M00410 TRANSFAC - 149968040 149968053 3.0E-06 TATTAACAATAGTT 14 V_ER71_01_M01988 TRANSFAC - 149969817 149969826 5.0E-06 ACCGGAAGTG 10 V_ELK1_01_M00007 TRANSFAC - 149969814 149969829 9.0E-06 GGCACCGGAAGTGACC 16 V_NKX32_02_M01482 TRANSFAC + 149967751 149967767 6.0E-06 GATAAATACTTAAGCAC 17 V_NET_01_M01982 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_ER81_01_M01987 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_ATF1_Q6_M00691 TRANSFAC - 149972355 149972365 4.0E-06 CTTTGAAGTCA 11 V_SOX15_03_M02799 TRANSFAC - 149968038 149968054 8.0E-06 CTATTAACAATAGTTTG 17 V_ERM_02_M02069 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_GABPBETA_Q3_M01876 TRANSFAC - 149969816 149969826 0.0E+00 ACCGGAAGTGA 11 V_FOXL1_02_M02857 TRANSFAC + 149968324 149968339 3.0E-06 ATGTTAATACAAAACA 16 V_LUN1_01_M00480 TRANSFAC + 149968539 149968555 1.0E-06 TCACAGCTACTCAAGGA 17 NR1H2_RXRA_MA0115.1 JASPAR + 149969743 149969759 1.0E-05 CCAGTTCAATCGTCAAC 17 V_AIRE_01_M00999 TRANSFAC + 149969988 149970013 5.0E-06 ATAGACCTTGGTGTAGATGGTATTAT 26 V_TCF7_04_M02921 TRANSFAC + 149970163 149970177 9.0E-06 CTGTTTTAGAACCTA 15 V_ZFP206_01_M01742 TRANSFAC - 149969929 149969939 3.0E-06 TGCGCACGCGC 11 V_NKX22_01_M00485 TRANSFAC - 149967754 149967763 2.0E-06 TTAAGTATTT 10 V_NRF2_01_M00108 TRANSFAC - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 V_NRF1_Q6_M00652 TRANSFAC + 149969930 149969939 6.0E-06 CGCGTGCGCA 10 V_PITX2_Q2_M00482 TRANSFAC - 149968983 149968993 8.0E-06 TTTAATCAAAA 11 V_RSRFC4_01_M00026 TRANSFAC + 149968227 149968242 8.0E-06 AAGCTTTATATAGCTT 16 V_RSRFC4_01_M00026 TRANSFAC - 149968227 149968242 8.0E-06 AAGCTATATAAAGCTT 16 V_E47_01_M00002 TRANSFAC + 149972367 149972381 4.0E-06 AATGCAGGTGTTCAT 15 V_SAP1A_03_M02058 TRANSFAC - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 V_SOX8_03_M02808 TRANSFAC + 149968038 149968054 3.0E-06 CAAACTATTGTTAATAG 17 V_CETS1_02_M02063 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_HFH3_01_M00289 TRANSFAC + 149972407 149972419 5.0E-06 GAATATTTGTGTA 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 149969675 149969692 5.0E-06 GGCAGCGAGGAAGGAGGG 18 V_SATB1_01_M01232 TRANSFAC + 149968178 149968189 6.0E-06 TATTACCTATAA 12 V_SATB1_01_M01232 TRANSFAC - 149968321 149968332 8.0E-06 TATTAACATTAA 12 V_EKLF_Q5_M01874 TRANSFAC - 149969905 149969914 5.0E-06 CCACACCCTC 10 V_NET_02_M02060 TRANSFAC - 149969817 149969826 4.0E-06 ACCGGAAGTG 10 V_SOX2_Q6_M01272 TRANSFAC - 149968496 149968511 1.0E-05 AAATTTTTTGTATTTT 16 V_ERG_02_M01985 TRANSFAC - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 V_MEF2A_05_M01301 TRANSFAC - 149968230 149968241 4.0E-06 AGCTATATAAAG 12 V_ER71_02_M02067 TRANSFAC - 149969817 149969826 3.0E-06 ACCGGAAGTG 10 V_ETV3_02_M02068 TRANSFAC - 149969817 149969826 2.0E-06 ACCGGAAGTG 10 V_OCT4_01_M01125 TRANSFAC + 149968185 149968199 5.0E-06 TATAAAAATGTAAAC 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.