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C9orf9 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 11092 chromosome 9 open reading frame 9 chr9 + 135749289 - 135754789 135754289 Transcription Factor Binding Sites   Download all TFBS in the C9orf9 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 135754616 135754624 2.0E-06 CTAATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 135754615 135754624 9.0E-06 CTAATAAAAT 10 SOX10_HMG_full_dimeric_16_1 SELEX + 135755036 135755051 4.0E-06 AACAATGAGGAGTGGT 16 SPIC_ETS_full_monomeric_14_1 SELEX - 135755075 135755088 3.0E-06 AGAAAGGGGAAGTG 14 SOX9_HMG_full_dimeric_16_1 SELEX + 135755036 135755051 5.0E-06 AACAATGAGGAGTGGT 16 FOXL1_forkhead_full_dimeric_13_1 SELEX + 135757401 135757413 6.0E-06 TGTCAATAAACCA 13 SOX8_HMG_DBD_dimeric_16_1 SELEX + 135755036 135755051 2.0E-06 AACAATGAGGAGTGGT 16 SRY_HMG_DBD_dimeric_16_1 SELEX - 135755036 135755051 4.0E-06 ACCACTCCTCATTGTT 16 ZNF232_C2H2_full_monomeric_19_1 SELEX - 135754997 135755015 3.0E-06 CTGTAAAATGGGAATGAAG 19 SPIB_ETS_DBD_monomeric_14_1 SELEX - 135755075 135755088 0.0E+00 AGAAAGGGGAAGTG 14 RFX2_RFX_DBD_dimeric_15_1 SELEX - 135753661 135753675 6.0E-06 GGTTACTAGGGAGCG 15 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 135754616 135754625 4.0E-06 ACTAATAAAA 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 135754616 135754624 7.0E-06 CTAATAAAA 9 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 135754615 135754624 2.0E-06 CTAATAAAAT 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 135754615 135754625 1.0E-05 ACTAATAAAAT 11 SP4_C2H2_full_monomeric_17_1 SELEX + 135754247 135754263 6.0E-06 GCGGCCCCGCCCCTTCT 17 Lhx3_MA0135.1 JASPAR + 135754614 135754626 1.0E-05 TATTTTATTAGTC 13 SOX7_HMG_full_dimeric_16_1 SELEX + 135755036 135755051 1.0E-06 AACAATGAGGAGTGGT 16 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 135754615 135754624 2.0E-06 CTAATAAAAT 10 RFX5_RFX_DBD_dimeric_16_3 SELEX - 135754213 135754228 5.0E-06 CGGTGCCATAGCAATC 16 INSM1_MA0155.1 JASPAR + 135757259 135757270 6.0E-06 TGCATGGGGGCA 12 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 135755074 135755088 4.0E-06 AGAAAGGGGAAGTGA 15 SOX21_HMG_DBD_dimeric_16_1 SELEX + 135755036 135755051 1.0E-06 AACAATGAGGAGTGGT 16 TEAD1_TEA_full_dimeric_17_1 SELEX + 135755512 135755528 9.0E-06 ACATTTCTGAAATGACT 17 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 135754615 135754624 2.0E-06 CTAATAAAAT 10 SPI1_ETS_full_monomeric_14_1 SELEX - 135755075 135755088 0.0E+00 AGAAAGGGGAAGTG 14 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 135754615 135754625 3.0E-06 ACTAATAAAAT 11 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 135754616 135754624 9.0E-06 CTAATAAAA 9 E2F2_E2F_DBD_dimeric_18_1 SELEX - 135757236 135757253 2.0E-06 TAAGGAGGCGCCAAAAAA 18 TP63_p53l_DBD_dimeric_18_1 SELEX - 135755786 135755803 8.0E-06 AGCAACTTGTGACATGCA 18 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 135754615 135754625 7.0E-06 ACTAATAAAAT 11 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 135754615 135754624 2.0E-06 CTAATAAAAT 10 V_SPI1_01_M01203 TRANSFAC - 135755072 135755088 1.0E-06 AGAAAGGGGAAGTGACT 17 V_AP1_Q2_M00173 TRANSFAC - 135754339 135754349 8.0E-06 AGTGACTCCGT 11 V_MEIS1_02_M01419 TRANSFAC - 135755171 135755186 9.0E-06 ATCCATCTGTCAAATG 16 V_TCF3_01_M01594 TRANSFAC + 135756380 135756392 3.0E-06 TTTTTGTATTTTT 13 V_BACH2_01_M00490 TRANSFAC + 135757347 135757357 5.0E-06 CGTGAGTCAGC 11 V_ZFP410_04_M02936 TRANSFAC + 135753580 135753596 7.0E-06 GTTCTCCTCCCCGTACT 17 V_ZFX_01_M01593 TRANSFAC - 135753715 135753730 1.0E-05 GGCGGGGCCGCGGCGC 16 V_BCL6_01_M01183 TRANSFAC + 135756379 135756394 3.0E-06 TTTTTTGTATTTTTAT 16 V_ETS_B_M00340 TRANSFAC + 135757330 135757343 5.0E-06 AACAGGAAACCACT 14 V_IK_Q5_M01169 TRANSFAC - 135755317 135755326 5.0E-06 GTTGGGAGGG 10 V_SP1_Q6_01_M00931 TRANSFAC - 135754250 135754259 4.0E-06 GGGGCGGGGC 10 V_P53_DECAMER_Q2_M00761 TRANSFAC + 135755310 135755319 9.0E-06 AGACATGCCC 10 V_GKLF_02_M01588 TRANSFAC + 135753723 135753734 8.0E-06 GCCCCGCCCTGC 12 V_SP1_02_M01303 TRANSFAC - 135753781 135753791 8.0E-06 GGGGCGGGGGC 11 V_HEN1_01_M00068 TRANSFAC + 135753462 135753483 7.0E-06 CTCGGCCCCAGCTGCGGGTCCC 22 V_PU1_Q4_M01172 TRANSFAC + 135755069 135755087 3.0E-06 GTGAGTCACTTCCCCTTTC 19 V_HOXD13_01_M01404 TRANSFAC - 135754612 135754627 1.0E-06 CGACTAATAAAATATC 16 V_TGIF2_01_M01407 TRANSFAC - 135755171 135755186 4.0E-06 ATCCATCTGTCAAATG 16 V_WT1_Q6_01_M02036 TRANSFAC + 135753780 135753789 4.0E-06 CGCCCCCGCC 10 V_ETS_Q4_M00771 TRANSFAC + 135755360 135755371 5.0E-06 AACCGCTTCCTC 12 V_COMP1_01_M00057 TRANSFAC + 135755229 135755252 6.0E-06 TGGTTAGATTGGGCAGAGCCAGGG 24 V_SOX13_03_M02797 TRANSFAC + 135755031 135755046 7.0E-06 ATTAGAACAATGAGGA 16 V_GC_01_M00255 TRANSFAC - 135754248 135754261 0.0E+00 AAGGGGCGGGGCCG 14 V_SPI1_03_M02078 TRANSFAC - 135755075 135755084 1.0E-05 AGGGGAAGTG 10 V_SPI1_03_M02078 TRANSFAC - 135755821 135755830 1.0E-05 AGAGGAACTG 10 V_ZFP105_03_M02827 TRANSFAC - 135756377 135756391 1.0E-05 AAAATACAAAAAAAG 15 V_TBX18_01_M01262 TRANSFAC + 135754980 135754998 3.0E-06 TCCTGTGAAATAGGCACCT 19 V_HOXB13_01_M01467 TRANSFAC - 135754612 135754627 0.0E+00 CGACTAATAAAATATC 16 V_KROX_Q6_M00982 TRANSFAC + 135753778 135753791 1.0E-06 GTCGCCCCCGCCCC 14 V_PXRRXR_02_M01153 TRANSFAC - 135755255 135755262 1.0E-05 AGAGTTCA 8 V_HOXB9_01_M01426 TRANSFAC - 135754612 135754627 8.0E-06 CGACTAATAAAATATC 16 V_SP1_Q6_M00196 TRANSFAC - 135754249 135754261 1.0E-06 AAGGGGCGGGGCC 13 V_IRF3_Q3_M01279 TRANSFAC + 135755495 135755507 7.0E-06 TTTGTTTTGCTTC 13 V_SOX_Q6_M01014 TRANSFAC - 135755032 135755044 3.0E-06 CTCATTGTTCTAA 13 V_SOX18_03_M02801 TRANSFAC - 135755030 135755045 6.0E-06 CCTCATTGTTCTAATC 16 V_GLIS2_03_M02759 TRANSFAC + 135757412 135757427 2.0E-06 CATGGACCCCCCATCT 16 V_JUNDM2_04_M02876 TRANSFAC + 135755065 135755080 7.0E-06 TTGGGTGAGTCACTTC 16 V_NFE4_Q5_M02105 TRANSFAC + 135754281 135754292 5.0E-06 CACCCTCGCCTC 12 V_OCT1_04_M00138 TRANSFAC - 135756374 135756396 1.0E-06 TAATAAAAATACAAAAAAAGTTA 23 V_GR_Q6_M00192 TRANSFAC - 135755809 135755827 1.0E-05 GGAACTGACTCTGTTCTTG 19 V_SPIB_01_M01204 TRANSFAC - 135755072 135755088 0.0E+00 AGAAAGGGGAAGTGACT 17 V_HB24_01_M01399 TRANSFAC - 135754612 135754626 7.0E-06 GACTAATAAAATATC 15 V_MAFK_Q3_M02022 TRANSFAC + 135757349 135757359 1.0E-06 TGAGTCAGCAT 11 V_SMAD4_Q6_M00733 TRANSFAC - 135757270 135757284 8.0E-06 GTGAGGGAGACACTT 15 V_AP1_01_M00517 TRANSFAC + 135757346 135757358 1.0E-06 GCGTGAGTCAGCA 13 V_SOX11_03_M02795 TRANSFAC + 135755031 135755047 4.0E-06 ATTAGAACAATGAGGAG 17 V_INSM1_01_M02268 TRANSFAC + 135757259 135757270 6.0E-06 TGCATGGGGGCA 12 V_SOX9_B1_M00410 TRANSFAC + 135755032 135755045 2.0E-06 TTAGAACAATGAGG 14 V_FOXO1_Q5_M01216 TRANSFAC - 135755495 135755503 8.0E-06 CAAAACAAA 9 V_HOXD9_Q2_M01834 TRANSFAC - 135754616 135754625 8.0E-06 ACTAATAAAA 10 V_SP4_Q5_M01273 TRANSFAC + 135753782 135753792 7.0E-06 CCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 135754250 135754260 8.0E-06 GCCCCGCCCCT 11 V_ELF1_Q6_M00746 TRANSFAC - 135755076 135755087 1.0E-05 GAAAGGGGAAGT 12 V_HBP1_04_M02866 TRANSFAC + 135755000 135755016 1.0E-06 CATTCCCATTTTACAGA 17 V_MTF1_06_M02882 TRANSFAC - 135756377 135756390 1.0E-06 AAATACAAAAAAAG 14 V_TAL1_01_M01591 TRANSFAC - 135755425 135755437 1.0E-06 CTTCCTTTTCTTC 13 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 135754279 135754287 8.0E-06 GAGGGTGGG 9 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 135754314 135754322 8.0E-06 GAGGGTGGG 9 V_AP1FJ_Q2_M00172 TRANSFAC - 135754339 135754349 4.0E-06 AGTGACTCCGT 11 V_CAAT_C_M00200 TRANSFAC - 135755031 135755055 3.0E-06 GCCAACCACTCCTCATTGTTCTAAT 25 V_TEF1_Q6_03_M01817 TRANSFAC - 135755774 135755782 9.0E-06 CAGGAATGT 9 V_SIX4_01_M01374 TRANSFAC - 135757394 135757410 9.0E-06 TTTATTGACACCTGCCA 17 V_SRF_06_M02916 TRANSFAC - 135756381 135756397 9.0E-06 GTAATAAAAATACAAAA 17 V_NFE2_01_M00037 TRANSFAC - 135757348 135757358 1.0E-06 TGCTGACTCAC 11 V_SOX12_03_M02796 TRANSFAC - 135755030 135755043 0.0E+00 TCATTGTTCTAATC 14 V_SP1_Q2_01_M00933 TRANSFAC + 135754251 135754260 7.0E-06 CCCCGCCCCT 10 V_SP1_Q4_01_M00932 TRANSFAC - 135754249 135754261 0.0E+00 AAGGGGCGGGGCC 13 V_HOXD10_01_M01375 TRANSFAC - 135754611 135754627 6.0E-06 CGACTAATAAAATATCA 17 V_TCF11MAFG_01_M00284 TRANSFAC + 135757343 135757364 6.0E-06 TGTGCGTGAGTCAGCATGTCTG 22 V_RNF96_01_M01199 TRANSFAC + 135754243 135754252 7.0E-06 GCCCGCGGCC 10 V_ARID5A_04_M02840 TRANSFAC - 135756378 135756394 6.0E-06 ATAAAAATACAAAAAAA 17 V_PAX4_04_M00380 TRANSFAC - 135754592 135754621 5.0E-06 ATAAAATATCAAGCTGCCCCGTACCACTGG 30 V_NANOG_02_M01247 TRANSFAC - 135756375 135756394 1.0E-06 ATAAAAATACAAAAAAAGTT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.