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RAPGEF4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 11069 Rap guanine nucleotide exchange factor (GEF) 4 chr2 + 173595524 - 173601024 173600524 Transcription Factor Binding Sites   Download all TFBS in the RAPGEF4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 173599579 173599591 1.0E-06 ATAAATATCAAAA 13 POU2F1_POU_DBD_dimeric_14_1 SELEX + 173603290 173603303 1.0E-06 TATGAATATGCTAA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 173603290 173603303 1.0E-06 TTAGCATATTCATA 14 ZNF713_C2H2_full_monomeric_17_1 SELEX - 173604554 173604570 6.0E-06 ATGATGAATGCCAGCAA 17 SOX21_HMG_DBD_dimeric_13_2 SELEX + 173604643 173604655 9.0E-06 AGAATGGTTTTCA 13 SRY_HMG_DBD_dimeric_13_2 SELEX - 173604643 173604655 3.0E-06 TGAAAACCATTCT 13 RFX4_RFX_DBD_dimeric_16_1 SELEX - 173600185 173600200 9.0E-06 TGTTTCCTTAGAAACC 16 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 173603296 173603304 4.0E-06 TATGCTAAT 9 SOX9_HMG_full_dimeric_17_3 SELEX + 173599684 173599700 6.0E-06 AATAACTTGTAGACATG 17 SOX9_HMG_full_dimeric_17_3 SELEX - 173604552 173604568 5.0E-06 GATGAATGCCAGCAATG 17 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX + 173601308 173601324 8.0E-06 TGTGTTAGAGAAGGTCA 17 POU2F3_POU_DBD_monomeric_9_1 SELEX + 173603296 173603304 3.0E-06 TATGCTAAT 9 POU1F1_POU_DBD_monomeric_14_1 SELEX + 173603294 173603307 0.0E+00 AATATGCTAATTTC 14 SOX15_HMG_full_dimeric_15_3 SELEX - 173604642 173604656 5.0E-06 GTGAAAACCATTCTT 15 POU2F2_POU_DBD_monomeric_11_1 SELEX + 173603295 173603305 0.0E+00 ATATGCTAATT 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 173603296 173603304 3.0E-06 TATGCTAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 173603296 173603304 3.0E-06 TATGCTAAT 9 Pax4_MA0068.1 JASPAR + 173600238 173600267 4.0E-06 AAAAATATATAGACACTGGCAGCCCTCTCC 30 Pax4_MA0068.1 JASPAR + 173600239 173600268 2.0E-06 AAAATATATAGACACTGGCAGCCCTCTCCC 30 TCF7L1_HMG_full_monomeric_12_1 SELEX + 173600123 173600134 9.0E-06 AGACAGCAAAGG 12 RUNX3_RUNX_full_monomeric_10_1 SELEX + 173603312 173603321 5.0E-06 CAACCACAAA 10 LEF1_HMG_DBD_monomeric_15_1 SELEX + 173599409 173599423 7.0E-06 TAGGATCAAAGCATC 15 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 173600185 173600200 1.0E-05 GGTTTCTAAGGAAACA 16 POU3F3_POU_DBD_monomeric_13_1 SELEX + 173603294 173603306 0.0E+00 AATATGCTAATTT 13 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 173603290 173603303 0.0E+00 TATGAATATGCTAA 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 173603290 173603303 0.0E+00 TTAGCATATTCATA 14 POU2F3_POU_DBD_dimeric_12_1 SELEX + 173603291 173603302 1.0E-06 ATGAATATGCTA 12 POU2F3_POU_DBD_dimeric_12_1 SELEX - 173603291 173603302 6.0E-06 TAGCATATTCAT 12 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 173600161 173600170 9.0E-06 AGCAGCTGTC 10 SOX14_HMG_DBD_dimeric_15_1 SELEX - 173604642 173604656 3.0E-06 GTGAAAACCATTCTT 15 RFX2_RFX_DBD_dimeric_16_1 SELEX + 173600185 173600200 6.0E-06 GGTTTCTAAGGAAACA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 173600185 173600200 6.0E-06 TGTTTCCTTAGAAACC 16 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 173599397 173599414 9.0E-06 ATCCTAATAAAACAATTA 18 RFX5_RFX_DBD_dimeric_16_3 SELEX - 173600185 173600200 2.0E-06 TGTTTCCTTAGAAACC 16 POU3F1_POU_DBD_monomeric_12_1 SELEX + 173603295 173603306 0.0E+00 ATATGCTAATTT 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 173603291 173603302 1.0E-06 ATGAATATGCTA 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 173603291 173603302 4.0E-06 TAGCATATTCAT 12 Pou5f1_MA0142.1 JASPAR + 173603290 173603304 6.0E-06 TATGAATATGCTAAT 15 Myf_MA0055.1 JASPAR + 173600160 173600171 5.0E-06 CGACAGCTGCTG 12 POU2F1_POU_DBD_monomeric_12_1 SELEX + 173603294 173603305 0.0E+00 AATATGCTAATT 12 TEAD1_TEA_full_dimeric_17_1 SELEX + 173604551 173604567 6.0E-06 TCATTGCTGGCATTCAT 17 Sox3_HMG_DBD_dimeric_17_3 SELEX - 173604552 173604568 4.0E-06 GATGAATGCCAGCAATG 17 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX - 173596930 173596943 7.0E-06 AGGTTCAAAGTTAG 14 IRF3_IRF_full_trimeric_21_1 SELEX - 173599432 173599452 5.0E-06 GAGAGAAGGAAAGAGCAAGTG 21 ZNF524_C2H2_full_monomeric_14_1 SELEX - 173599895 173599908 8.0E-06 CTTGAACCCTGGGC 14 POU3F3_POU_DBD_dimeric_12_1 SELEX + 173603291 173603302 9.0E-06 ATGAATATGCTA 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 173603295 173603306 0.0E+00 ATATGCTAATTT 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 173599397 173599414 7.0E-06 ATCCTAATAAAACAATTA 18 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 173604673 173604685 4.0E-06 AAATAAATCAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 173599579 173599591 3.0E-06 ATAAATATCAAAA 13 Sox1_HMG_DBD_dimeric_15_2 SELEX - 173604642 173604656 8.0E-06 GTGAAAACCATTCTT 15 V_HOXA9_01_M01351 TRANSFAC + 173599573 173599589 2.0E-06 AGTGCCATAAATATCAA 17 V_TGIF_01_M00418 TRANSFAC - 173604610 173604620 3.0E-06 AGCTGTCAGAT 11 V_E2A_Q6_01_M02088 TRANSFAC + 173600160 173600172 3.0E-06 CGACAGCTGCTGA 13 V_FREAC7_01_M00293 TRANSFAC + 173599574 173599589 6.0E-06 GTGCCATAAATATCAA 16 V_TCF3_01_M01594 TRANSFAC - 173599580 173599592 2.0E-06 GTTTTGATATTTA 13 V_LEF1_04_M02774 TRANSFAC - 173599408 173599424 4.0E-06 GGATGCTTTGATCCTAA 17 V_CDX2_Q5_01_M01659 TRANSFAC + 173599576 173599586 2.0E-06 GCCATAAATAT 11 V_OSF2_Q6_M00731 TRANSFAC + 173603314 173603321 1.0E-05 ACCACAAA 8 V_MAFK_03_M02776 TRANSFAC + 173603292 173603306 3.0E-06 TGAATATGCTAATTT 15 V_DMRT3_01_M01148 TRANSFAC + 173604776 173604790 0.0E+00 ATTTGGTTACATATT 15 V_LRH1_Q5_01_M02098 TRANSFAC + 173599902 173599912 1.0E-06 GTTCAAGGCCA 11 V_AML3_Q6_M01856 TRANSFAC + 173603313 173603320 1.0E-05 AACCACAA 8 V_POU5F1_02_M02245 TRANSFAC + 173603290 173603304 6.0E-06 TATGAATATGCTAAT 15 V_IK_Q5_M01169 TRANSFAC + 173601325 173601334 3.0E-06 TTTGGGAGGC 10 V_OCT1_Q5_01_M00930 TRANSFAC - 173600234 173600244 7.0E-06 TATTTTTCATA 11 V_MEF2_02_M00231 TRANSFAC + 173599570 173599591 6.0E-06 TGTAGTGCCATAAATATCAAAA 22 V_DR4_Q2_M00965 TRANSFAC - 173601308 173601324 4.0E-06 TGACCTTCTCTAACACA 17 V_OCT1_01_M00135 TRANSFAC + 173603291 173603309 0.0E+00 ATGAATATGCTAATTTCTT 19 V_POU2F3_01_M01476 TRANSFAC + 173603293 173603308 4.0E-06 GAATATGCTAATTTCT 16 V_POU3F2_02_M00464 TRANSFAC + 173603295 173603304 1.0E-06 ATATGCTAAT 10 V_STAT6_01_M00494 TRANSFAC - 173604670 173604677 7.0E-06 TATTTCCA 8 V_HOXD13_01_M01404 TRANSFAC - 173599399 173599414 1.0E-06 ATCCTAATAAAACAAT 16 V_LYF1_01_M00141 TRANSFAC + 173601325 173601333 9.0E-06 TTTGGGAGG 9 V_LDSPOLYA_B_M00317 TRANSFAC + 173599851 173599866 0.0E+00 CAACTGTGTTTTCTTC 16 V_OCT2_02_M01761 TRANSFAC + 173603292 173603301 6.0E-06 TGAATATGCT 10 V_OCT2_02_M01761 TRANSFAC - 173603292 173603301 1.0E-05 AGCATATTCA 10 V_REX1_01_M01695 TRANSFAC + 173600209 173600218 4.0E-06 GCAGCCATTT 10 V_WT1_Q6_01_M02036 TRANSFAC - 173600637 173600646 4.0E-06 CGCCCCCGCC 10 V_RPC155_01_M01798 TRANSFAC + 173599896 173599911 8.0E-06 CCCAGGGTTCAAGGCC 16 V_TCF3_04_M02816 TRANSFAC + 173599408 173599424 5.0E-06 TTAGGATCAAAGCATCC 17 V_FOXA2_02_M02853 TRANSFAC + 173599579 173599593 3.0E-06 ATAAATATCAAAACA 15 V_MYF_01_M01302 TRANSFAC + 173600160 173600171 5.0E-06 CGACAGCTGCTG 12 V_OCT1_02_M00136 TRANSFAC + 173603291 173603305 1.0E-06 ATGAATATGCTAATT 15 V_HOXB13_01_M01467 TRANSFAC - 173599399 173599414 3.0E-06 ATCCTAATAAAACAAT 16 V_TEF_Q6_M00672 TRANSFAC - 173599705 173599716 2.0E-06 ATGTTCACACAA 12 V_SOX8_04_M02912 TRANSFAC + 173604530 173604543 5.0E-06 ACATTCATGTAGTA 14 V_NKX31_02_M02782 TRANSFAC + 173604462 173604478 5.0E-06 CAGATCCACTTATAAGT 17 V_NKX26_01_M01322 TRANSFAC + 173604463 173604478 2.0E-06 AGATCCACTTATAAGT 16 V_SOX7_04_M02911 TRANSFAC + 173599393 173599414 3.0E-06 GTAATAATTGTTTTATTAGGAT 22 V_AML2_01_M01759 TRANSFAC + 173603313 173603320 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC - 173600635 173600648 1.0E-06 TCCGCCCCCGCCTC 14 V_ZBP89_Q4_M01816 TRANSFAC - 173599500 173599509 6.0E-06 TCCTCCCCCC 10 V_CEBPD_Q6_M00621 TRANSFAC + 173596813 173596824 8.0E-06 AATTTCTCCACT 12 V_IRX4_01_M01410 TRANSFAC - 173599682 173599698 7.0E-06 TGTCTACAAGTTATTCA 17 V_HOXB9_01_M01426 TRANSFAC + 173599573 173599588 9.0E-06 AGTGCCATAAATATCA 16 V_ARID3A_02_M02839 TRANSFAC + 173599579 173599593 2.0E-06 ATAAATATCAAAACA 15 V_CDX2_01_M01449 TRANSFAC + 173599572 173599587 7.0E-06 TAGTGCCATAAATATC 16 V_EGR1_Q6_M01873 TRANSFAC + 173600638 173600647 4.0E-06 GCGGGGGCGG 10 V_HNF1_Q6_01_M01011 TRANSFAC - 173604777 173604797 2.0E-06 TGTAGACAATATGTAACCAAA 21 V_ASCL2_03_M02737 TRANSFAC + 173600158 173600174 1.0E-06 TTCGACAGCTGCTGAGG 17 V_YY1_Q6_02_M01035 TRANSFAC + 173600209 173600219 5.0E-06 GCAGCCATTTT 11 V_OCT1_04_M00138 TRANSFAC + 173603289 173603311 1.0E-06 ATATGAATATGCTAATTTCTTCC 23 V_REX1_03_M01744 TRANSFAC - 173600208 173600219 0.0E+00 AAAATGGCTGCT 12 V_MEF2_04_M00233 TRANSFAC + 173599570 173599591 7.0E-06 TGTAGTGCCATAAATATCAAAA 22 V_TCF7_03_M02817 TRANSFAC + 173599408 173599424 5.0E-06 TTAGGATCAAAGCATCC 17 V_NCX_02_M01420 TRANSFAC - 173596805 173596821 3.0E-06 GGAGAAATTAATAGTAT 17 V_IRX3_01_M01318 TRANSFAC - 173599682 173599698 1.0E-05 TGTCTACAAGTTATTCA 17 V_SOX17_04_M02904 TRANSFAC + 173604526 173604542 0.0E+00 ATACACATTCATGTAGT 17 V_NKX32_02_M01482 TRANSFAC + 173604462 173604478 5.0E-06 CAGATCCACTTATAAGT 17 V_IRF7_01_M00453 TRANSFAC - 173596915 173596932 2.0E-06 TAGGAATTTGAAGGCAGG 18 V_IRX3_02_M01485 TRANSFAC - 173599682 173599698 8.0E-06 TGTCTACAAGTTATTCA 17 V_LRH1_Q5_M01142 TRANSFAC - 173599902 173599913 0.0E+00 CTGGCCTTGAAC 12 V_MTF1_06_M02882 TRANSFAC + 173599581 173599594 5.0E-06 AAATATCAAAACAG 14 V_NKX25_03_M01414 TRANSFAC + 173604463 173604478 7.0E-06 AGATCCACTTATAAGT 16 V_OSR2_04_M02889 TRANSFAC - 173600214 173600229 0.0E+00 AAATGCTACTAAAATG 16 V_OCT2_01_M01368 TRANSFAC + 173603293 173603308 3.0E-06 GAATATGCTAATTTCT 16 V_FOXL1_02_M02857 TRANSFAC - 173599401 173599416 5.0E-06 TGATCCTAATAAAACA 16 V_FOXJ3_06_M02855 TRANSFAC + 173599582 173599598 1.0E-06 AATATCAAAACAGTGCT 17 V_FOXJ3_06_M02855 TRANSFAC + 173599605 173599621 4.0E-06 TAGTCCAAAACATTTAA 17 V_NKX61_02_M01469 TRANSFAC + 173596806 173596821 7.0E-06 TACTATTAATTTCTCC 16 V_TCF7_04_M02921 TRANSFAC + 173600231 173600245 2.0E-06 CTGTATGAAAAATAT 15 V_FPM315_01_M01587 TRANSFAC + 173599501 173599512 2.0E-06 GGGGGAGGAGGC 12 V_FOXO3_01_M00477 TRANSFAC - 173599634 173599647 4.0E-06 TGGTTGTTTAGGAA 14 V_ESRRA_03_M02748 TRANSFAC + 173601313 173601329 9.0E-06 TAGAGAAGGTCATTTGG 17 V_OSR1_04_M02888 TRANSFAC - 173600214 173600229 0.0E+00 AAATGCTACTAAAATG 16 V_IRX2_01_M01405 TRANSFAC - 173604528 173604544 1.0E-05 ATACTACATGAATGTGT 17 V_OCT1_07_M00248 TRANSFAC + 173603294 173603305 0.0E+00 AATATGCTAATT 12 V_HOXD8_01_M01432 TRANSFAC - 173596805 173596821 5.0E-06 GGAGAAATTAATAGTAT 17 V_BARHL2_01_M01446 TRANSFAC + 173599609 173599624 5.0E-06 CCAAAACATTTAACTT 16 V_HOXA7_03_M01394 TRANSFAC - 173596806 173596821 2.0E-06 GGAGAAATTAATAGTA 16 V_EHF_07_M02849 TRANSFAC + 173596921 173596936 0.0E+00 TTCAAATTCCTAACTT 16 V_HOXD10_01_M01375 TRANSFAC - 173599398 173599414 1.0E-06 ATCCTAATAAAACAATT 17 V_PAX4_04_M00380 TRANSFAC - 173603279 173603308 2.0E-06 AGAAATTAGCATATTCATATGCCACACCAC 30 V_NANOG_02_M01247 TRANSFAC + 173604672 173604691 6.0E-06 GAAATAAATCAAAAGAAGAT 20 V_OCT4_01_M01125 TRANSFAC + 173603290 173603304 1.0E-05 TATGAATATGCTAAT 15 V_HSF1_Q6_01_M02017 TRANSFAC - 173599421 173599434 6.0E-06 GTGCTTTCTGGGAT 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.