Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RAB40B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10966 RAB40B, member RAS oncogene family chr17 - 80656098 - 80661598 80656598 Transcription Factor Binding Sites   Download all TFBS in the RAB40B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXA1_MA0148.1 JASPAR + 80656877 80656887 6.0E-06 TGTTTACACTC 11 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 80659807 80659815 8.0E-06 AAAAGTCAT 9 FOXO3_MA0157.1 JASPAR - 80656877 80656884 7.0E-06 TGTAAACA 8 Tp53_p53l_DBD_dimeric_18_2 SELEX + 80659814 80659831 1.0E-05 ATCTTGTTTAGGCTTGTC 18 Tp53_p53l_DBD_dimeric_18_2 SELEX - 80659814 80659831 6.0E-06 GACAAGCCTAAACAAGAT 18 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 80660360 80660371 5.0E-06 AAAATGCTGAAA 12 IRF7_IRF_DBD_trimeric_17_1 SELEX - 80660303 80660319 3.0E-06 CAACAGAAAATCCATCT 17 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 80657245 80657259 3.0E-06 TGCACACGCAGACAT 15 NHLH1_bHLH_full_dimeric_10_1 SELEX - 80656656 80656665 9.0E-06 CGCAGCTGCC 10 TBX1_TBX_DBD_dimeric_20_1 SELEX + 80659837 80659856 6.0E-06 TCGTGAGAAAACAGGAGACA 20 V_AP2ALPHA_Q6_M01857 TRANSFAC + 80656574 80656584 3.0E-06 CGCCTCCGGCC 11 V_TCF3_01_M01594 TRANSFAC + 80660444 80660456 5.0E-06 TTTTTCATTTTTA 13 V_FOXO3_02_M02270 TRANSFAC - 80656877 80656884 7.0E-06 TGTAAACA 8 V_ZFP410_04_M02936 TRANSFAC - 80656836 80656852 9.0E-06 CCACCCCGCCCCGCCAT 17 V_ACAAT_B_M00309 TRANSFAC + 80656633 80656641 8.0E-06 CATTGGTGG 9 V_MTF1_Q4_M00650 TRANSFAC - 80656511 80656524 2.0E-06 TCTGCGCTCAGCCC 14 V_MAFB_05_M02775 TRANSFAC - 80660356 80660372 8.0E-06 GAAAATGCTGAAATAGA 17 V_GATA3_03_M00351 TRANSFAC - 80660351 80660360 3.0E-06 ATAGATATTA 10 V_FOXJ2_02_M00423 TRANSFAC + 80660347 80660360 3.0E-06 CACATAATATCTAT 14 V_SP1_Q6_01_M00931 TRANSFAC - 80656582 80656591 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 80656841 80656850 7.0E-06 GGGGCGGGGT 10 V_MEF2_02_M00231 TRANSFAC + 80660446 80660467 2.0E-06 TTTCATTTTTAAAATAGTTCCG 22 V_IRF_Q6_01_M00972 TRANSFAC - 80660445 80660455 2.0E-06 AAAAATGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC - 80660442 80660457 2.0E-06 TTAAAAATGAAAAACA 16 V_CEBP_C_M00201 TRANSFAC - 80660354 80660371 8.0E-06 AAAATGCTGAAATAGATA 18 V_POU3F2_02_M00464 TRANSFAC - 80660344 80660353 9.0E-06 TTATGTGAAT 10 V_P53_DECAMER_Q2_M00761 TRANSFAC - 80659823 80659832 7.0E-06 AGACAAGCCT 10 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 80660365 80660376 5.0E-06 GCATTTTCCCAC 12 V_SP1_02_M01303 TRANSFAC + 80656841 80656851 3.0E-06 GGGGCGGGGTG 11 V_HOXD13_01_M01404 TRANSFAC - 80660520 80660535 9.0E-06 CCTTCCATAAAATCGA 16 V_TCFAP2E_04_M02926 TRANSFAC + 80659794 80659807 2.0E-06 GTCTCAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 80659796 80659809 2.0E-06 CTCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 80659797 80659810 3.0E-06 TCAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 80659798 80659811 9.0E-06 CAAAAAAAAAAAAG 14 V_MEF2A_Q6_M02024 TRANSFAC - 80660452 80660461 2.0E-06 TATTTTAAAA 10 V_ELF4_04_M02850 TRANSFAC + 80659794 80659810 1.0E-06 GTCTCAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 80659795 80659811 1.0E-06 TCTCAAAAAAAAAAAAG 17 V_ELF4_04_M02850 TRANSFAC + 80659796 80659812 4.0E-06 CTCAAAAAAAAAAAAGT 17 V_ELF4_04_M02850 TRANSFAC + 80659797 80659813 3.0E-06 TCAAAAAAAAAAAAGTC 17 V_COMP1_01_M00057 TRANSFAC + 80659703 80659726 5.0E-06 TCAGAAGAATGGCGTGAAACAGGG 24 V_ZNF219_01_M01122 TRANSFAC - 80656846 80656857 8.0E-06 CGCCCCCACCCC 12 V_GC_01_M00255 TRANSFAC + 80656861 80656874 4.0E-06 AGGGGGTGGGGCCG 14 V_GC_01_M00255 TRANSFAC + 80659724 80659737 9.0E-06 GGGAGGCGGAGCTT 14 V_ZFP105_03_M02827 TRANSFAC + 80659796 80659810 1.0E-06 CTCAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 80659797 80659811 3.0E-06 TCAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC + 80659798 80659812 8.0E-06 CAAAAAAAAAAAAGT 15 V_ZFP105_03_M02827 TRANSFAC + 80659799 80659813 5.0E-06 AAAAAAAAAAAAGTC 15 V_CART1_01_M00416 TRANSFAC + 80660339 80660356 2.0E-06 CAGTAATTCACATAATAT 18 V_POLY_C_M00212 TRANSFAC - 80659903 80659920 8.0E-06 CAATAAATCTTTTTAGGG 18 V_ZBED6_01_M01598 TRANSFAC + 80656371 80656382 5.0E-06 CAGGCTCGCCAG 12 V_P53_03_M01651 TRANSFAC + 80659813 80659832 4.0E-06 CATCTTGTTTAGGCTTGTCT 20 V_P53_03_M01651 TRANSFAC - 80659813 80659832 3.0E-06 AGACAAGCCTAAACAAGATG 20 V_SP1_Q6_M00196 TRANSFAC - 80656581 80656593 4.0E-06 GCGGGGCGGGGCC 13 V_MEF2_03_M00232 TRANSFAC + 80660446 80660467 2.0E-06 TTTCATTTTTAAAATAGTTCCG 22 V_OCT1_04_M00138 TRANSFAC - 80660437 80660459 2.0E-06 TTTTAAAAATGAAAAACATGTTA 23 V_SP1_01_M00008 TRANSFAC + 80656841 80656850 3.0E-06 GGGGCGGGGT 10 V_SP4_Q5_M01273 TRANSFAC + 80656582 80656592 2.0E-06 GCCCCGCCCCG 11 V_MTF1_06_M02882 TRANSFAC - 80660442 80660455 2.0E-06 AAAAATGAAAAACA 14 V_PLAG1_01_M01778 TRANSFAC + 80660381 80660396 4.0E-06 GGGGCACAGGGAGGGG 16 V_RBPJK_01_M01112 TRANSFAC - 80660369 80660379 3.0E-06 TCCGTGGGAAA 11 V_P53_04_M01652 TRANSFAC + 80659813 80659832 5.0E-06 CATCTTGTTTAGGCTTGTCT 20 V_P53_04_M01652 TRANSFAC - 80659813 80659832 4.0E-06 AGACAAGCCTAAACAAGATG 20 V_ZFP281_01_M01597 TRANSFAC + 80656861 80656871 5.0E-06 AGGGGGTGGGG 11 V_P63_01_M01656 TRANSFAC + 80659813 80659832 5.0E-06 CATCTTGTTTAGGCTTGTCT 20 V_SRF_06_M02916 TRANSFAC + 80659794 80659810 2.0E-06 GTCTCAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 80659795 80659811 2.0E-06 TCTCAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC + 80659796 80659812 0.0E+00 CTCAAAAAAAAAAAAGT 17 V_SRF_06_M02916 TRANSFAC + 80659797 80659813 0.0E+00 TCAAAAAAAAAAAAGTC 17 V_SRF_06_M02916 TRANSFAC + 80659798 80659814 0.0E+00 CAAAAAAAAAAAAGTCA 17 V_SRF_06_M02916 TRANSFAC - 80660403 80660419 5.0E-06 GGAAGAAGAAAAAAGAA 17 V_IRF1_01_M00062 TRANSFAC - 80660444 80660456 8.0E-06 TAAAAATGAAAAA 13 V_CMAF_01_M01070 TRANSFAC - 80660354 80660372 6.0E-06 GAAAATGCTGAAATAGATA 19 V_SP1_Q4_01_M00932 TRANSFAC - 80656581 80656593 6.0E-06 GCGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 80656861 80656873 3.0E-06 AGGGGGTGGGGCC 13 V_SREBP1_Q5_M01173 TRANSFAC - 80659769 80659783 9.0E-06 TCTCTCACCCCAGCT 15 V_TCF3_05_M02920 TRANSFAC + 80659795 80659809 4.0E-06 TCTCAAAAAAAAAAA 15 V_BRCA_01_M01082 TRANSFAC + 80660312 80660319 1.0E-05 TTCTGTTG 8 V_NANOG_02_M01247 TRANSFAC - 80660402 80660421 1.0E-06 TTGGAAGAAGAAAAAAGAAA 20 V_NANOG_02_M01247 TRANSFAC - 80660439 80660458 6.0E-06 TTTAAAAATGAAAAACATGT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.