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MSL3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10943 male-specific lethal 3 homolog (Drosophila) chrX + 11771277 - 11778234 11777734 Transcription Factor Binding Sites   Download all TFBS in the MSL3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 11776611 11776629 1.0E-06 CGGCCGGCAGGGGGCGCTC 19 SOX10_HMG_full_dimeric_16_1 SELEX - 11778014 11778029 9.0E-06 ATCAATTTTCAGTCTG 16 SOX10_HMG_full_dimeric_14_1 SELEX - 11778015 11778028 6.0E-06 TCAATTTTCAGTCT 14 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX - 11775061 11775078 7.0E-06 ATGACCTCATTAAGACAG 18 ZNF435_C2H2_full_dimeric_18_1 SELEX - 11775747 11775764 9.0E-06 GCTGTGAATAGAACACTT 18 ZNF232_C2H2_full_monomeric_19_1 SELEX - 11774635 11774653 8.0E-06 GTGTAAACCGTAACTGAAG 19 POU1F1_POU_DBD_monomeric_14_1 SELEX + 11775077 11775090 4.0E-06 ATTTTGCAAATGAA 14 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 11774625 11774642 3.0E-06 AAGGTGAATACTTCAGTT 18 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX - 11775768 11775785 9.0E-06 GAGGGCAGAAGGGCACTC 18 Pax4_MA0068.1 JASPAR - 11777752 11777781 4.0E-06 AAATATTTTTCCTTTCATTTTTTTCCCCCA 30 SPIB_ETS_DBD_monomeric_14_1 SELEX + 11775301 11775314 5.0E-06 GAGAAGGGGAAGTT 14 TBX1_TBX_DBD_dimeric_19_1 SELEX - 11775747 11775765 3.0E-06 GGCTGTGAATAGAACACTT 19 THRB_nuclearreceptor_DBD_dimeric_18_1 SELEX + 11775061 11775078 7.0E-06 CTGTCTTAATGAGGTCAT 18 THRB_nuclearreceptor_DBD_dimeric_18_1 SELEX - 11775061 11775078 9.0E-06 ATGACCTCATTAAGACAG 18 LEF1_HMG_DBD_monomeric_15_1 SELEX + 11777760 11777774 6.0E-06 AAAAATGAAAGGAAA 15 IRF1_MA0050.1 JASPAR + 11777760 11777771 7.0E-06 AAAAATGAAAGG 12 IRF1_MA0050.1 JASPAR - 11778102 11778113 9.0E-06 CAAAGTAAAAGC 12 POU3F3_POU_DBD_monomeric_13_1 SELEX + 11775077 11775089 7.0E-06 ATTTTGCAAATGA 13 POU6F2_POU_DBD_dimeric_16_1 SELEX + 11775066 11775081 0.0E+00 TTAATGAGGTCATTTT 16 POU6F2_POU_DBD_dimeric_16_1 SELEX - 11775066 11775081 2.0E-06 AAAATGACCTCATTAA 16 ONECUT1_CUT_full_monomeric_14_1 SELEX - 11778021 11778034 8.0E-06 AGACAATCAATTTT 14 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX + 11778002 11778018 5.0E-06 AACTTGTTAAACCAGAC 17 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX - 11778002 11778018 1.0E-06 GTCTGGTTTAACAAGTT 17 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX - 11774694 11774705 7.0E-06 GTTCCCCACAAA 12 SP1_MA0079.2 JASPAR - 11776234 11776243 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR + 11776307 11776316 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 11776536 11776545 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 11776542 11776551 7.0E-06 CCCCGCCCCC 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 11778021 11778034 1.0E-05 AGACAATCAATTTT 14 SOX9_HMG_full_dimeric_16_3 SELEX - 11778014 11778029 5.0E-06 ATCAATTTTCAGTCTG 16 CTCF_C2H2_full_monomeric_17_1 SELEX - 11776612 11776628 1.0E-06 AGCGCCCCCTGCCGGCC 17 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 11775208 11775222 7.0E-06 TGCCCACGCTGAAAT 15 TBX20_TBX_full_dimeric_16_1 SELEX - 11777679 11777694 7.0E-06 GCGTGAGACAGTGTGA 16 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 11777759 11777773 5.0E-06 AAAAAATGAAAGGAA 15 FEV_MA0156.1 JASPAR - 11778095 11778102 1.0E-05 CAGGAAAT 8 FEV_MA0156.1 JASPAR - 11778167 11778174 1.0E-05 CAGGAAAT 8 Pou5f1_MA0142.1 JASPAR - 11774222 11774236 4.0E-06 CTTTGTAATGCACTT 15 TEAD1_TEA_full_dimeric_17_1 SELEX - 11775217 11775233 3.0E-06 ACATCCTTCACATTTCA 17 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 11774695 11774705 5.0E-06 GTTCCCCACAA 11 VDR_nuclearreceptor_full_dimeric_16_1 SELEX - 11778000 11778015 1.0E-05 TGGTTTAACAAGTTCA 16 SPI1_ETS_full_monomeric_14_1 SELEX + 11775301 11775314 4.0E-06 GAGAAGGGGAAGTT 14 IRF3_IRF_full_trimeric_21_1 SELEX + 11777758 11777778 3.0E-06 AAAAAAATGAAAGGAAAAATA 21 ETV6_ETS_full_dimeric_15_1 SELEX - 11776669 11776683 2.0E-06 AAGGAAGTGGAAGCA 15 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 11774694 11774705 6.0E-06 GTTCCCCACAAA 12 ELF5_MA0136.1 JASPAR + 11774196 11774204 2.0E-06 TATTTCCTT 9 Sox2_MA0143.1 JASPAR - 11774223 11774237 1.0E-05 TCTTTGTAATGCACT 15 RARG_nuclearreceptor_full_dimeric_16_1 SELEX - 11775770 11775785 2.0E-06 GAGGGCAGAAGGGCAC 16 IRF2_MA0051.1 JASPAR + 11777759 11777776 3.0E-06 AAAAAATGAAAGGAAAAA 18 V_FOXP1_01_M00987 TRANSFAC - 11777760 11777779 1.0E-06 ATATTTTTCCTTTCATTTTT 20 V_CEBPG_Q6_M00622 TRANSFAC + 11779349 11779361 8.0E-06 CCCATTTATGAAT 13 V_TCF3_01_M01594 TRANSFAC - 11774225 11774237 2.0E-06 TCTTTGTAATGCA 13 V_TCF3_01_M01594 TRANSFAC - 11777759 11777771 1.0E-06 CCTTTCATTTTTT 13 V_CDX2_Q5_01_M01659 TRANSFAC - 11779350 11779360 4.0E-06 TTCATAAATGG 11 V_MEQCJUN_02_M02048 TRANSFAC + 11775068 11775078 1.0E-06 AATGAGGTCAT 11 V_TBX15_01_M01263 TRANSFAC - 11775747 11775765 8.0E-06 GGCTGTGAATAGAACACTT 19 V_FXR_Q3_M00631 TRANSFAC + 11777991 11778004 2.0E-06 GAAGGTGAGTGAAC 14 V_CEBP_Q3_M00770 TRANSFAC + 11775075 11775086 7.0E-06 TCATTTTGCAAA 12 V_RORA1_01_M00156 TRANSFAC + 11775066 11775078 7.0E-06 TTAATGAGGTCAT 13 V_EVI1_04_M00081 TRANSFAC + 11777760 11777774 5.0E-06 AAAAATGAAAGGAAA 15 V_EVI1_04_M00081 TRANSFAC - 11778163 11778177 8.0E-06 AGACAGGAAATGAAA 15 V_POU5F1_02_M02245 TRANSFAC - 11774222 11774236 4.0E-06 CTTTGTAATGCACTT 15 V_MAFB_03_M02879 TRANSFAC - 11775074 11775088 5.0E-06 CATTTGCAAAATGAC 15 V_SP1_Q6_01_M00931 TRANSFAC + 11776653 11776662 7.0E-06 GGGGCGGGGT 10 V_IRF_Q6_01_M00972 TRANSFAC + 11777760 11777770 1.0E-06 AAAAATGAAAG 11 V_IRF_Q6_01_M00972 TRANSFAC - 11778090 11778100 9.0E-06 GGAAATGAAAC 11 V_IRF_Q6_01_M00972 TRANSFAC - 11778162 11778172 9.0E-06 GGAAATGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC + 11777758 11777773 0.0E+00 AAAAAAATGAAAGGAA 16 V_IRF2_Q6_M01882 TRANSFAC - 11778087 11778102 5.0E-06 CAGGAAATGAAACAAA 16 V_IRF2_Q6_M01882 TRANSFAC - 11778159 11778174 5.0E-06 CAGGAAATGAAACAAA 16 V_NFAT3_Q3_M01734 TRANSFAC - 11777769 11777778 4.0E-06 TATTTTTCCT 10 V_SP1_03_M02281 TRANSFAC - 11776234 11776243 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC + 11776307 11776316 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 11776536 11776545 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 11776542 11776551 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC - 11776305 11776315 3.0E-06 GGGGCGGGGAG 11 V_SP1_02_M01303 TRANSFAC + 11776537 11776547 8.0E-06 GGGGCGGGGGC 11 V_SP1_02_M01303 TRANSFAC + 11776543 11776553 8.0E-06 GGGGCGGGGGC 11 V_SP1_02_M01303 TRANSFAC + 11776653 11776663 8.0E-06 GGGGCGGGGTC 11 V_PU1_Q4_M01172 TRANSFAC + 11778088 11778106 2.0E-06 TTGTTTCATTTCCTGCTTT 19 V_PU1_Q4_M01172 TRANSFAC + 11778160 11778178 3.0E-06 TTGTTTCATTTCCTGTCTT 19 V_PU1_Q4_M01172 TRANSFAC + 11778232 11778250 0.0E+00 TTGATTCATTTCCTGTTTT 19 V_WT1_Q6_01_M02036 TRANSFAC + 11776310 11776319 4.0E-06 CGCCCCCGCC 10 V_WT1_Q6_01_M02036 TRANSFAC - 11776539 11776548 4.0E-06 CGCCCCCGCC 10 V_WT1_Q6_01_M02036 TRANSFAC - 11776545 11776554 4.0E-06 CGCCCCCGCC 10 RXRA_VDR_MA0074.1 JASPAR - 11778000 11778014 1.0E-06 GGTTTAACAAGTTCA 15 V_TST1_01_M00133 TRANSFAC - 11776404 11776418 3.0E-06 GTGGAATTTAAATTT 15 V_HELIOSA_02_M01004 TRANSFAC + 11777766 11777776 1.0E-05 GAAAGGAAAAA 11 V_TCF3_04_M02816 TRANSFAC + 11777759 11777775 9.0E-06 AAAAAATGAAAGGAAAA 17 V_GCM1_04_M02862 TRANSFAC + 11777564 11777580 9.0E-06 TGGACATAGGGGAGCCC 17 V_MYCMAX_02_M00123 TRANSFAC - 11774665 11774676 1.0E-05 AAGCACATGTAA 12 V_GATA3_05_M02859 TRANSFAC + 11778294 11778315 7.0E-06 TTAAGTCGATTGTATTTGGATT 22 V_SOX8_04_M02912 TRANSFAC - 11779350 11779363 1.0E-05 GCATTCATAAATGG 14 V_NFAT_Q6_M00302 TRANSFAC - 11777725 11777736 7.0E-06 AATAGGAAACAT 12 V_NKX61_01_M00424 TRANSFAC + 11777973 11777985 7.0E-06 ATTTTAATGGTTG 13 V_KROX_Q6_M00982 TRANSFAC + 11776308 11776321 1.0E-06 CCCGCCCCCGCCCG 14 V_KROX_Q6_M00982 TRANSFAC - 11776537 11776550 0.0E+00 CCCGCCCCCGCCCC 14 V_KROX_Q6_M00982 TRANSFAC - 11776543 11776556 0.0E+00 TCCGCCCCCGCCCC 14 V_ZBP89_Q4_M01816 TRANSFAC + 11776322 11776331 4.0E-06 CCCTCCCCCA 10 V_IRX4_01_M01410 TRANSFAC - 11774207 11774223 9.0E-06 TTTGTTCATGTTTAAAA 17 V_TBX5_02_M01020 TRANSFAC - 11775151 11775160 6.0E-06 TGAGGTGTTC 10 V_SP1_Q6_M00196 TRANSFAC + 11776535 11776547 9.0E-06 CGGGGGCGGGGGC 13 V_SP1_Q6_M00196 TRANSFAC + 11776541 11776553 9.0E-06 CGGGGGCGGGGGC 13 V_IRF3_Q3_M01279 TRANSFAC - 11777767 11777779 3.0E-06 ATATTTTTCCTTT 13 V_RXRA_04_M02895 TRANSFAC - 11778118 11778133 3.0E-06 TAAAGAAGTTTGCAAT 16 V_RFX4_04_M02893 TRANSFAC + 11776899 11776913 9.0E-06 ATTCATAGTTACACG 15 V_EGR1_Q6_M01873 TRANSFAC - 11776309 11776318 4.0E-06 GCGGGGGCGG 10 V_EGR1_Q6_M01873 TRANSFAC + 11776540 11776549 4.0E-06 GCGGGGGCGG 10 V_EGR1_Q6_M01873 TRANSFAC + 11776546 11776555 4.0E-06 GCGGGGGCGG 10 V_IRF_Q6_M00772 TRANSFAC - 11777760 11777774 0.0E+00 TTTCCTTTCATTTTT 15 V_IRF_Q6_M00772 TRANSFAC + 11778086 11778100 2.0E-06 GTTTGTTTCATTTCC 15 V_IRF_Q6_M00772 TRANSFAC + 11778158 11778172 2.0E-06 GTTTGTTTCATTTCC 15 V_TATA_C_M00216 TRANSFAC + 11777819 11777828 3.0E-06 TCTTTAAAAA 10 V_CLOX_01_M00103 TRANSFAC + 11778021 11778035 7.0E-06 AAAATTGATTGTCTT 15 V_TCF7_03_M02817 TRANSFAC + 11777759 11777775 4.0E-06 AAAAAATGAAAGGAAAA 17 V_CDP_02_M00102 TRANSFAC + 11778021 11778035 6.0E-06 AAAATTGATTGTCTT 15 V_HNF4A_Q6_01_M02016 TRANSFAC + 11774217 11774231 7.0E-06 GAACAAAGTGCATTA 15 V_ISGF3G_03_M02771 TRANSFAC - 11778087 11778101 8.0E-06 AGGAAATGAAACAAA 15 V_ISGF3G_03_M02771 TRANSFAC - 11778159 11778173 8.0E-06 AGGAAATGAAACAAA 15 V_SP1_01_M00008 TRANSFAC + 11776653 11776662 3.0E-06 GGGGCGGGGT 10 V_CTCF_02_M01259 TRANSFAC + 11776608 11776627 7.0E-06 GTGCGGCCGGCAGGGGGCGC 20 V_ATF1_04_M02842 TRANSFAC + 11778275 11778288 9.0E-06 TTGTGACGAATAGT 14 V_CTCF_01_M01200 TRANSFAC + 11776610 11776629 0.0E+00 GCGGCCGGCAGGGGGCGCTC 20 V_HOXD9_Q2_M01834 TRANSFAC - 11777975 11777984 8.0E-06 AACCATTAAA 10 V_ZFP691_04_M02937 TRANSFAC + 11774158 11774174 8.0E-06 TCATTGACTCCTAAAAA 17 V_SP4_Q5_M01273 TRANSFAC + 11776306 11776316 9.0E-06 TCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 11776536 11776546 5.0E-06 CCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 11776542 11776552 5.0E-06 CCCCCGCCCCC 11 V_ELF1_Q6_M00746 TRANSFAC + 11775302 11775313 1.0E-05 AGAAGGGGAAGT 12 V_ELF1_Q6_M00746 TRANSFAC - 11778095 11778106 9.0E-06 AAAGCAGGAAAT 12 V_VJUN_01_M00036 TRANSFAC + 11775066 11775081 4.0E-06 TTAATGAGGTCATTTT 16 V_MTF1_06_M02882 TRANSFAC - 11777724 11777737 3.0E-06 AAATAGGAAACATC 14 V_GABPBETA_Q3_M01876 TRANSFAC - 11778165 11778175 4.0E-06 ACAGGAAATGA 11 V_TAL1_01_M01591 TRANSFAC - 11775737 11775749 6.0E-06 CTTGCTTATCCCT 13 V_IPF1_05_M01255 TRANSFAC - 11777973 11777984 1.0E-06 AACCATTAAAAT 12 V_ZBTB12_04_M02928 TRANSFAC - 11775748 11775762 7.0E-06 TGTGAATAGAACACT 15 V_AIRE_01_M00999 TRANSFAC - 11774161 11774186 4.0E-06 ACTTCATAGGGTTTTTTAGGAGTCAA 26 V_FPM315_01_M01587 TRANSFAC + 11776502 11776513 6.0E-06 CAGGGAGGAGGC 12 V_FPM315_01_M01587 TRANSFAC + 11776784 11776795 2.0E-06 GAGGGAGGAGGC 12 V_IRF1_Q6_01_M01881 TRANSFAC - 11777759 11777772 2.0E-06 TCCTTTCATTTTTT 14 V_DMRT2_01_M01147 TRANSFAC + 11778281 11778296 3.0E-06 CGAATAGTTACTTTTA 16 V_SOX2_01_M02246 TRANSFAC - 11774223 11774237 1.0E-05 TCTTTGTAATGCACT 15 V_SOX2_Q6_M01272 TRANSFAC - 11774226 11774241 3.0E-06 AGTCTCTTTGTAATGC 16 V_SOX15_04_M02903 TRANSFAC + 11776403 11776417 1.0E-05 GAAATTTAAATTCCA 15 V_SP1_Q2_01_M00933 TRANSFAC + 11776307 11776316 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 11776536 11776545 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 11776542 11776551 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 11776231 11776244 2.0E-06 GGCGGAGGAGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 11776306 11776319 5.0E-06 GGCGGGGGCGGGGA 14 V_ELF5_04_M02241 TRANSFAC + 11774196 11774204 2.0E-06 TATTTCCTT 9 V_MAFK_04_M02880 TRANSFAC + 11777757 11777771 2.0E-06 GAAAAAAATGAAAGG 15 V_TCF3_05_M02920 TRANSFAC - 11776405 11776419 8.0E-06 AGTGGAATTTAAATT 15 V_FEV_01_M02269 TRANSFAC - 11778095 11778102 1.0E-05 CAGGAAAT 8 V_FEV_01_M02269 TRANSFAC - 11778167 11778174 1.0E-05 CAGGAAAT 8 V_DMRT1_01_M01146 TRANSFAC + 11778043 11778057 4.0E-06 TAGAAACATTGCAGA 15 V_DTYPEPA_B_M00334 TRANSFAC - 11777974 11777983 3.0E-06 ACCATTAAAA 10 V_BRCA_01_M01082 TRANSFAC + 11775197 11775204 1.0E-05 TTCTGTTG 8 V_VDRRXR_01_M01202 TRANSFAC - 11778000 11778014 1.0E-06 GGTTTAACAAGTTCA 15 V_AR_Q2_M00447 TRANSFAC - 11774216 11774230 4.0E-06 AATGCACTTTGTTCA 15 V_AR_Q2_M00447 TRANSFAC + 11775302 11775316 7.0E-06 AGAAGGGGAAGTTCA 15 V_PAX4_04_M00380 TRANSFAC - 11777710 11777739 1.0E-05 CAAAATAGGAAACATCCGTCCAACCACCCC 30 V_PAX4_04_M00380 TRANSFAC + 11777758 11777787 6.0E-06 AAAAAAATGAAAGGAAAAATATTTCAACCC 30 V_PAX4_04_M00380 TRANSFAC + 11777759 11777788 2.0E-06 AAAAAATGAAAGGAAAAATATTTCAACCCG 30 V_DMRT5_01_M01150 TRANSFAC + 11778283 11778297 1.0E-05 AATAGTTACTTTTAA 15 V_CEBPA_Q6_M01866 TRANSFAC + 11775075 11775087 2.0E-06 TCATTTTGCAAAT 13 V_NANOG_02_M01247 TRANSFAC + 11777757 11777776 1.0E-06 GAAAAAAATGAAAGGAAAAA 20 V_TCF11_01_M00285 TRANSFAC + 11775074 11775086 8.0E-06 GTCATTTTGCAAA 13

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