Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MAGED2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10916 melanoma antigen family D, 2 chrX + 54829170 - 54835992 54835492 Transcription Factor Binding Sites   Download all TFBS in the MAGED2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX - 54834105 54834116 7.0E-06 GCCACCCCCCCT 12 SP8_C2H2_DBD_monomeric_12_1 SELEX - 54835097 54835108 5.0E-06 AACACGCCCCCC 12 SP8_C2H2_DBD_monomeric_12_1 SELEX - 54835322 54835333 9.0E-06 AACACGCCCCTT 12 GABPA_MA0062.2 JASPAR - 54834776 54834786 2.0E-06 CCGGAAGTGGT 11 SPIC_ETS_full_monomeric_14_1 SELEX + 54834605 54834618 7.0E-06 AGAAATGGGAAGAA 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 54835098 54835108 3.0E-06 AACACGCCCCC 11 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 54835096 54835109 1.0E-06 TAACACGCCCCCCT 14 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 54835321 54835334 4.0E-06 CAACACGCCCCTTT 14 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 54835497 54835510 8.0E-06 GACCCCGCCCCTTT 14 EWSR1-FLI1_MA0149.1 JASPAR + 54834430 54834447 8.0E-06 GGGAGGAGGGGAGAAAAA 18 KLF13_C2H2_full_monomeric_18_1 SELEX - 54835318 54835335 2.0E-06 TCAACACGCCCCTTTCTA 18 Klf4_MA0039.2 JASPAR - 54834913 54834922 1.0E-05 AGGGTGGGGC 10 LEF1_HMG_DBD_monomeric_15_1 SELEX + 54835386 54835400 5.0E-06 GGACATCAAAGAAAG 15 SP1_MA0079.2 JASPAR - 54834431 54834440 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR - 54834719 54834728 3.0E-06 CCCCTCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 54835112 54835128 6.0E-06 TTGGCCCCGCCCTTCTT 17 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 54835386 54835397 6.0E-06 GGACATCAAAGA 12 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 54834952 54834967 3.0E-06 ACCGGATCGTACCGGA 16 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX - 54834952 54834967 2.0E-06 TCCGGTACGATCCGGT 16 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 54834962 54834977 8.0E-06 ACCGGATCCATCCGGC 16 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 54835037 54835047 8.0E-06 TCAAATAAATA 11 INSM1_MA0155.1 JASPAR + 54833984 54833995 3.0E-06 TTTCAGGGGGCG 12 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 54835112 54835126 6.0E-06 GGCCCCGCCCTTCTT 15 Myf_MA0055.1 JASPAR + 54835356 54835367 1.0E-05 AGCCAGCTGCTG 12 GABPA_ETS_full_monomeric_10_1 SELEX - 54834778 54834787 9.0E-06 GCCGGAAGTG 10 NRF1_NRF_full_dimeric_12_1 SELEX - 54835449 54835460 9.0E-06 AGCGCATGCGCG 12 RREB1_MA0073.1 JASPAR - 54835612 54835631 5.0E-06 CCCTCCACCACCCCCAACGA 20 V_KLF15_Q2_M01714 TRANSFAC + 54835153 54835166 4.0E-06 GAGTAGGGGAGGGG 14 V_E2A_Q6_01_M02088 TRANSFAC + 54835356 54835368 5.0E-06 AGCCAGCTGCTGA 13 V_GAF_Q6_M01209 TRANSFAC - 54834676 54834686 6.0E-06 CGTATTCCCTT 11 V_LEF1_04_M02774 TRANSFAC - 54835385 54835401 9.0E-06 CCTTTCTTTGATGTCCA 17 V_TCF4_Q5_01_M02033 TRANSFAC + 54835390 54835399 2.0E-06 ATCAAAGAAA 10 V_SP1_Q6_01_M00931 TRANSFAC + 54835500 54835509 7.0E-06 GGGGCGGGGT 10 V_P53_DECAMER_Q2_M00761 TRANSFAC + 54835761 54835770 3.0E-06 AGACATGTCT 10 V_P53_DECAMER_Q2_M00761 TRANSFAC - 54835761 54835770 3.0E-06 AGACATGTCT 10 V_GABPA_04_M02858 TRANSFAC - 54834605 54834620 1.0E-06 CCTTCTTCCCATTTCT 16 V_SP1_03_M02281 TRANSFAC - 54834431 54834440 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC - 54834719 54834728 3.0E-06 CCCCTCCCCC 10 V_GKLF_02_M01588 TRANSFAC - 54835114 54835125 5.0E-06 GCCCCGCCCTTC 12 V_SP1_02_M01303 TRANSFAC + 54835500 54835510 8.0E-06 GGGGCGGGGTC 11 V_P53_02_M00272 TRANSFAC + 54835761 54835770 1.0E-06 AGACATGTCT 10 V_P53_02_M00272 TRANSFAC - 54835761 54835770 1.0E-06 AGACATGTCT 10 V_NKX62_Q2_M00489 TRANSFAC - 54835035 54835046 7.0E-06 CAAATAAATACT 12 V_ELF4_04_M02850 TRANSFAC - 54835033 54835049 5.0E-06 CCTCAAATAAATACTGA 17 V_ZNF219_01_M01122 TRANSFAC - 54835093 54835104 1.0E-05 CGCCCCCCTCCA 12 V_ZNF219_01_M01122 TRANSFAC - 54835477 54835488 2.0E-06 CACCCCCCACCC 12 V_GC_01_M00255 TRANSFAC + 54835156 54835169 4.0E-06 TAGGGGAGGGGCCG 14 V_TCF3_04_M02816 TRANSFAC + 54835385 54835401 6.0E-06 TGGACATCAAAGAAAGG 17 V_MYF_01_M01302 TRANSFAC + 54835356 54835367 1.0E-05 AGCCAGCTGCTG 12 V_SP4_03_M02810 TRANSFAC - 54835093 54835109 5.0E-06 TAACACGCCCCCCTCCA 17 V_SP4_03_M02810 TRANSFAC - 54835211 54835227 1.0E-06 GGTCCCGCCCCCTGCCC 17 V_ER81_02_M02065 TRANSFAC - 54834778 54834787 1.0E-05 GCCGGAAGTG 10 V_SP1_Q6_M00196 TRANSFAC + 54834766 54834778 8.0E-06 AAGGGGCGGGACC 13 V_SP1_Q6_M00196 TRANSFAC + 54835215 54835227 3.0E-06 AGGGGGCGGGACC 13 V_SP1_Q6_M00196 TRANSFAC + 54835498 54835510 2.0E-06 AAGGGGCGGGGTC 13 V_MAZ_Q6_01_M02023 TRANSFAC + 54834428 54834441 4.0E-06 GAGGGAGGAGGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 54834431 54834444 8.0E-06 GGAGGAGGGGAGAA 14 V_GADP_01_M01258 TRANSFAC + 54834778 54834789 2.0E-06 CACTTCCGGCCT 12 V_NFE4_Q5_M02105 TRANSFAC - 54835244 54835255 9.0E-06 GCCCCTCTCCAG 12 V_SP1SP3_Q4_M01219 TRANSFAC - 54835213 54835223 8.0E-06 CCGCCCCCTGC 11 V_MUSCLE_INI_B_M00321 TRANSFAC - 54835470 54835490 1.0E-06 TGCACCCCCCACCCAGCCGCA 21 V_TCF7_03_M02817 TRANSFAC + 54835385 54835401 6.0E-06 TGGACATCAAAGAAAGG 17 V_KLF7_03_M02773 TRANSFAC - 54835113 54835128 1.0E-06 TTGGCCCCGCCCTTCT 16 V_KLF7_03_M02773 TRANSFAC - 54835497 54835512 0.0E+00 AGGACCCCGCCCCTTT 16 V_SP1_01_M00008 TRANSFAC + 54835500 54835509 3.0E-06 GGGGCGGGGT 10 V_INSM1_01_M02268 TRANSFAC + 54833984 54833995 3.0E-06 TTTCAGGGGGCG 12 V_SP4_Q5_M01273 TRANSFAC - 54834719 54834729 5.0E-06 GCCCCTCCCCC 11 V_HFH8_01_M00294 TRANSFAC + 54835034 54835046 3.0E-06 CAGTATTTATTTG 13 V_MINI19_B_M00323 TRANSFAC - 54835470 54835490 1.0E-06 TGCACCCCCCACCCAGCCGCA 21 V_LBP9_01_M01592 TRANSFAC - 54834950 54834966 7.0E-06 CCGGTACGATCCGGTCC 17 V_AP4_01_M00005 TRANSFAC + 54835354 54835371 0.0E+00 AGAGCCAGCTGCTGAATG 18 V_AP4_01_M00005 TRANSFAC + 54835734 54835751 2.0E-06 AGGCTCAGCTCTTGCCAG 18 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 54834915 54834923 8.0E-06 GAGGGTGGG 9 V_PLAG1_01_M01778 TRANSFAC + 54834119 54834134 7.0E-06 GGGGCTGCGGAAAGGG 16 V_CPHX_01_M01478 TRANSFAC + 54835016 54835029 1.0E-05 AAGATGGAATCACT 14 V_TEF1_Q6_03_M01817 TRANSFAC + 54834456 54834464 9.0E-06 CAGGAATGT 9 V_TFIIA_Q6_M00707 TRANSFAC + 54835041 54835052 8.0E-06 TATTTGAGGAGG 12 V_ZFP206_01_M01742 TRANSFAC + 54835449 54835459 2.0E-06 CGCGCATGCGC 11 V_FPM315_01_M01587 TRANSFAC + 54834428 54834439 0.0E+00 GAGGGAGGAGGG 12 V_NRF1_Q6_M00652 TRANSFAC - 54835449 54835458 4.0E-06 CGCATGCGCG 10 V_ZFP281_01_M01597 TRANSFAC + 54834718 54834728 7.0E-06 CGGGGGAGGGG 11 V_EWSR1FLI1_01_M02252 TRANSFAC + 54834430 54834447 8.0E-06 GGGAGGAGGGGAGAAAAA 18 V_FOXJ2_01_M00422 TRANSFAC - 54835032 54835049 5.0E-06 CCTCAAATAAATACTGAG 18 V_SP1_Q2_01_M00933 TRANSFAC - 54835499 54835508 7.0E-06 CCCCGCCCCT 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 54834084 54834097 9.0E-06 CTCGGGGGTGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 54834716 54834729 1.0E-06 AGCGGGGGAGGGGC 14 V_CP2_01_M00072 TRANSFAC - 54834141 54834151 6.0E-06 GCCCAACCCAG 11 V_SP1_Q4_01_M00932 TRANSFAC + 54834766 54834778 9.0E-06 AAGGGGCGGGACC 13 V_SP1_Q4_01_M00932 TRANSFAC + 54835114 54835126 9.0E-06 GAAGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 54835215 54835227 5.0E-06 AGGGGGCGGGACC 13 V_SP1_Q4_01_M00932 TRANSFAC + 54835498 54835510 1.0E-06 AAGGGGCGGGGTC 13 V_DMRT1_01_M01146 TRANSFAC + 54835183 54835197 6.0E-06 CTGCGACAATTTTGG 15 V_TCF4_01_M01705 TRANSFAC - 54835389 54835397 5.0E-06 TCTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.