Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

JTB Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10899 jumping translocation breakpoint chr1 - 153949951 - 153955451 153950451 Transcription Factor Binding Sites   Download all TFBS in the JTB promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints IRF7_IRF_DBD_dimeric_14_1 SELEX + 153950523 153950536 8.0E-06 ACGAACATGAAACT 14 FOXA1_MA0148.1 JASPAR + 153949119 153949129 1.0E-06 TGTTTGCTTAG 11 Esrrb_MA0141.1 JASPAR + 153950902 153950913 3.0E-06 TGTCCAAGGTCA 12 LEF1_HMG_DBD_monomeric_15_1 SELEX - 153949121 153949135 8.0E-06 AAACATCTAAGCAAA 15 ONECUT1_CUT_full_monomeric_14_1 SELEX + 153949912 153949925 0.0E+00 GAAAAATCGATATG 14 CUX2_CUT_DBD_monomeric_10_1 SELEX + 153949915 153949924 9.0E-06 AAATCGATAT 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 153949912 153949925 0.0E+00 GAAAAATCGATATG 14 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 153950817 153950827 9.0E-06 GTAAATACACA 11 POU3F1_POU_DBD_monomeric_12_1 SELEX - 153950629 153950640 9.0E-06 TTATGCAAAGGA 12 EN1_homeodomain_full_dimeric_14_1 SELEX - 153950678 153950691 1.0E-06 TGATTACTCCATTA 14 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 153950657 153950671 7.0E-06 AGCAAGGGAGAGTTG 15 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 153949912 153949925 0.0E+00 GAAAAATCGATATG 14 V_HNF3B_01_M00131 TRANSFAC + 153949114 153949128 1.0E-06 TTAAGTGTTTGCTTA 15 V_DBX1_01_M01483 TRANSFAC + 153949127 153949143 9.0E-06 TAGATGTTTAAAAAAAA 17 V_LRH1_Q5_01_M02098 TRANSFAC + 153950903 153950913 1.0E-06 GTCCAAGGTCA 11 V_HNF3_Q6_01_M01012 TRANSFAC + 153949114 153949131 2.0E-06 TTAAGTGTTTGCTTAGAT 18 V_HFH4_01_M00742 TRANSFAC + 153949116 153949128 0.0E+00 AAGTGTTTGCTTA 13 V_OCT_C_M00210 TRANSFAC + 153950628 153950640 4.0E-06 GTCCTTTGCATAA 13 V_LDSPOLYA_B_M00317 TRANSFAC + 153950284 153950299 1.0E-06 CGCGTGTTTGTTCATT 16 V_STAT4_Q4_M01666 TRANSFAC + 153950882 153950895 1.0E-06 TTCAGAGAATATAA 14 V_TCF3_04_M02816 TRANSFAC - 153949120 153949136 8.0E-06 TAAACATCTAAGCAAAC 17 V_FREAC3_01_M00291 TRANSFAC - 153950817 153950832 4.0E-06 TCCTGGTAAATACACA 16 V_HNF3G_Q4_M02015 TRANSFAC + 153950288 153950295 7.0E-06 TGTTTGTT 8 V_HNF3_Q6_M00791 TRANSFAC - 153949117 153949129 2.0E-06 CTAAGCAAACACT 13 V_HNF3_Q6_M00791 TRANSFAC - 153950286 153950298 5.0E-06 ATGAACAAACACG 13 V_OCT1_05_M00161 TRANSFAC + 153950628 153950641 5.0E-06 GTCCTTTGCATAAC 14 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 153949119 153949129 3.0E-06 TGTTTGCTTAG 11 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 153950288 153950298 3.0E-06 TGTTTGTTCAT 11 V_NKX22_02_M01372 TRANSFAC + 153950637 153950653 1.0E-05 ATAACCTCTTCAAATGC 17 V_CLOX_01_M00103 TRANSFAC - 153949911 153949925 4.0E-06 CATATCGATTTTTCT 15 V_HOX13_01_M00023 TRANSFAC - 153950907 153950936 8.0E-06 AGCTTTCCCACTCATTAGCTTGCTGACCTT 30 V_PAX6_Q2_M00979 TRANSFAC - 153949831 153949844 0.0E+00 CTGACCTGGAACCT 14 V_AHRARNT_02_M00237 TRANSFAC + 153950278 153950296 8.0E-06 GGCTGGCGCGTGTTTGTTC 19 V_TCF7_03_M02817 TRANSFAC - 153949120 153949136 6.0E-06 TAAACATCTAAGCAAAC 17 V_OCT1_B_M00342 TRANSFAC - 153950630 153950639 9.0E-06 TATGCAAAGG 10 V_OCT_Q6_M00795 TRANSFAC + 153950629 153950639 8.0E-06 TCCTTTGCATA 11 V_SF1_Q6_01_M01132 TRANSFAC - 153950905 153950913 7.0E-06 TGACCTTGG 9 V_LRH1_Q5_M01142 TRANSFAC - 153950903 153950914 0.0E+00 CTGACCTTGGAC 12 V_AREB6_02_M00413 TRANSFAC - 153949652 153949663 1.0E-05 TTTCACCTTAAA 12 V_OCT1_Q6_M00195 TRANSFAC - 153950628 153950642 1.0E-05 GGTTATGCAAAGGAC 15 V_DELTAEF1_01_M00073 TRANSFAC - 153949653 153949663 0.0E+00 TTTCACCTTAA 11 V_ERR2_01_M01589 TRANSFAC + 153950905 153950916 9.0E-06 CCAAGGTCAGCA 12 V_AIRE_01_M00999 TRANSFAC - 153950496 153950521 9.0E-06 ATGTGTCTCGGATATTCCGGTTTCTG 26 V_GATA6_01_M00462 TRANSFAC + 153949260 153949269 6.0E-06 AAAGATAAAT 10 V_NKX22_01_M00485 TRANSFAC + 153949114 153949123 2.0E-06 TTAAGTGTTT 10 V_MTATA_B_M00320 TRANSFAC + 153950350 153950366 4.0E-06 CTCCTTAAAACCCGAGG 17 V_FOXJ2_01_M00422 TRANSFAC - 153949114 153949131 0.0E+00 ATCTAAGCAAACACTTAA 18 V_HOMEZ_01_M01429 TRANSFAC + 153949912 153949928 7.0E-06 GAAAAATCGATATGTTT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.