Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

USP19 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10869 ubiquitin specific peptidase 19 chr3 - 49157871 - 49163371 49158371 Transcription Factor Binding Sites   Download all TFBS in the USP19 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints GABPA_MA0062.2 JASPAR - 49158377 49158387 4.0E-06 CCGGAAGTGCG 11 NFIX_NFI_full_dimeric_15_2 SELEX - 49156718 49156732 7.0E-06 CTGGCTTCTTTCCAT 15 Esrrb_MA0141.1 JASPAR - 49158106 49158117 0.0E+00 TGTTCAAGGTCA 12 SP1_MA0079.2 JASPAR + 49158280 49158289 3.0E-06 CCCCTCCCCC 10 ELK1_ETS_full_dimeric_17_1 SELEX + 49158379 49158395 0.0E+00 CACTTCCGGCGGGAATG 17 ELK1_ETS_full_dimeric_17_1 SELEX - 49158379 49158395 2.0E-06 CATTCCCGCCGGAAGTG 17 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 49158105 49158114 3.0E-06 TCAAGGTCAC 10 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 49158105 49158115 1.0E-06 TTCAAGGTCAC 11 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 49158104 49158114 4.0E-06 TCAAGGTCACG 11 GABPA_ETS_full_monomeric_10_1 SELEX - 49158379 49158388 9.0E-06 GCCGGAAGTG 10 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX - 49158105 49158123 9.0E-06 GCGGCCTGTTCAAGGTCAC 19 ETV6_ETS_full_dimeric_15_1 SELEX - 49158239 49158253 6.0E-06 CCGGAACCGGAACGG 15 ETV6_ETS_full_dimeric_15_1 SELEX - 49158261 49158275 1.0E-06 CCGGAACCGGAACCG 15 RORA_1_MA0071.1 JASPAR - 49158106 49158115 3.0E-06 TTCAAGGTCA 10 NFE2L2_MA0150.1 JASPAR - 49157087 49157097 1.0E-06 GTGACTAAGCA 11 RREB1_MA0073.1 JASPAR + 49162649 49162668 1.0E-06 CCACCAACCAACCCACTCAT 20 V_ERR3_Q2_01_M02094 TRANSFAC - 49158104 49158116 0.0E+00 GTTCAAGGTCACG 13 V_LRH1_Q5_01_M02098 TRANSFAC - 49158106 49158116 0.0E+00 GTTCAAGGTCA 11 V_GABP_B_M00341 TRANSFAC - 49158377 49158388 1.0E-06 GCCGGAAGTGCG 12 V_SP1_03_M02281 TRANSFAC + 49158280 49158289 3.0E-06 CCCCTCCCCC 10 V_COUPTF_Q6_M01036 TRANSFAC - 49158644 49158666 5.0E-06 GCCAGTGACCCCTGCCCAAGGCC 23 V_PU1_Q4_M01172 TRANSFAC - 49162609 49162627 4.0E-06 CATTTCTTCTTCCTCCTCC 19 V_PPARGRXRA_01_M02262 TRANSFAC + 49158647 49158661 7.0E-06 CTTGGGCAGGGGTCA 15 V_HIC1_03_M01073 TRANSFAC - 49158475 49158492 6.0E-06 CGAGGTTGCCCCCAGCAG 18 V_AP1_Q4_M00188 TRANSFAC - 49157088 49157098 8.0E-06 GGTGACTAAGC 11 V_ER81_02_M02065 TRANSFAC - 49158379 49158388 1.0E-05 GCCGGAAGTG 10 V_EVI1_01_M00078 TRANSFAC - 49156813 49156828 9.0E-06 AGAGATGAGAAGATAC 16 V_GADP_01_M01258 TRANSFAC + 49158379 49158390 2.0E-06 CACTTCCGGCGG 12 V_ERR1_Q3_M01841 TRANSFAC + 49158103 49158117 1.0E-06 CCGTGACCTTGAACA 15 V_DAX1_01_M01248 TRANSFAC - 49158100 49158119 7.0E-06 CCTGTTCAAGGTCACGGGCC 20 V_ELK1_02_M00025 TRANSFAC - 49158378 49158391 3.0E-06 CCCGCCGGAAGTGC 14 V_SF1_Q6_01_M01132 TRANSFAC + 49158106 49158114 3.0E-06 TGACCTTGA 9 V_BCL6B_04_M02844 TRANSFAC + 49158513 49158528 4.0E-06 CCGCCCGCCCCAAATC 16 V_SP4_Q5_M01273 TRANSFAC + 49158279 49158289 5.0E-06 GCCCCTCCCCC 11 V_GCNF_01_M00526 TRANSFAC - 49158104 49158121 2.0E-06 GGCCTGTTCAAGGTCACG 18 V_LRH1_Q5_M01142 TRANSFAC + 49158105 49158116 1.0E-06 GTGACCTTGAAC 12 V_FOXL1_02_M02857 TRANSFAC - 49158322 49158337 7.0E-06 AAGTCGAAACAAAACA 16 V_LUN1_01_M00480 TRANSFAC + 49156659 49156675 8.0E-06 GCCCAGCTATCTTGGCA 17 V_ERR1_Q2_M00511 TRANSFAC - 49158104 49158117 5.0E-06 TGTTCAAGGTCACG 14 V_ERR2_01_M01589 TRANSFAC - 49158103 49158114 0.0E+00 TCAAGGTCACGG 12 V_ESRRA_04_M02852 TRANSFAC + 49158650 49158666 4.0E-06 GGGCAGGGGTCACTGGC 17 V_SMAD3_03_M02794 TRANSFAC + 49158529 49158545 1.0E-06 AGAGTCCAGACAACACA 17 V_NRF2_Q4_M00821 TRANSFAC + 49157086 49157098 1.0E-05 CTGCTTAGTCACC 13 V_ESRRA_03_M02748 TRANSFAC - 49158101 49158117 2.0E-06 TGTTCAAGGTCACGGGC 17 V_SIX4_01_M01374 TRANSFAC + 49157751 49157767 2.0E-06 TTTAATGACACCTGCCA 17 V_SMAD_Q6_01_M00974 TRANSFAC + 49158603 49158613 2.0E-06 TAGGCAGACAT 11 V_ZFP281_01_M01597 TRANSFAC - 49158280 49158290 7.0E-06 CGGGGGAGGGG 11 V_ERR1_Q2_01_M02093 TRANSFAC - 49158103 49158113 2.0E-06 CAAGGTCACGG 11 V_SMAD3_Q6_M00701 TRANSFAC - 49158604 49158612 1.0E-05 TGTCTGCCT 9 V_NFE2L2_01_M02263 TRANSFAC - 49157087 49157097 1.0E-06 GTGACTAAGCA 11 V_UF1H3BETA_Q6_M01068 TRANSFAC - 49158279 49158292 1.0E-06 GACGGGGGAGGGGC 14 V_GFI1_Q6_01_M02010 TRANSFAC - 49158523 49158532 4.0E-06 CTCTGATTTG 10 PPARG_RXRA_MA0065.2 JASPAR + 49158647 49158661 7.0E-06 CTTGGGCAGGGGTCA 15 V_HOXC9_01_M01416 TRANSFAC - 49157748 49157763 5.0E-06 AGGTGTCATTAAAGAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.